Daniel Figeys

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 45

Top Topics

Mass Spectrometry

Pluripotent Stem Cells

Patients With Inflammatory Bowel Disease

Histone Deacetylase

Top Venues

Journal of proteome research

Analytical chemistry

Journal of the American Society for Mass Spectrometry

This page only lists publications with an associated author ORCID identifier.

Publications

Emily E F Brown, Angela Wang, Marybeth Creskey, Sarah E Cummings, Jessie R Lavoie, Zhibin Ning, Jianjun Li, Daniel Figeys, Rui Chen, Xu Zhang
Multilevel Proteomic Profiling of Colorectal Adenocarcinoma Caco-2 Cell Differentiation to Characterize an Intestinal Epithelial Model. Journal of proteome research 23 (7) (2024)
Haonan Duan, Zhibin Ning, Ailing Zhang, Daniel Figeys
Spectral entropy as a measure of the metaproteome complexity. Proteomics 24 (16) (2024)
Van-An Duong, Altai Enkhbayar, Nobel Bhasin, Lakmini Senavirathna, Eva C Preisner, Kristi L Hoffman, Richa Shukla, Robert R Jenq, Kai Cheng, Mary P Bronner, Daniel Figeys, Robert A Britton, Sheng Pan, Ru Chen
A complementary metaproteomic approach to interrogate microbiome cultivated from clinical colon biopsies. Proteomics (2024)
Van-An Duong, Altai Enkhbayar, Nobel Bhasin, Lakmini Senavirathna, Eva C Preisner, Kristi L Hoffman, Richa Shukla, Robert R Jenq, Kai Cheng, Mary P Bronner, Daniel Figeys, Robert A Britton, Sheng Pan, Ru Chen
A complementary metaproteomic approach to interrogate microbiome cultivated from clinical colon biopsies. Proteomics (2024)
Emily E F Brown, Angela Wang, Marybeth Creskey, Sarah E Cummings, Jessie R Lavoie, Zhibin Ning, Jianjun Li, Daniel Figeys, Rui Chen, Xu Zhang
Multilevel Proteomic Profiling of Colorectal Adenocarcinoma Caco-2 Cell Differentiation to Characterize an Intestinal Epithelial Model. Journal of proteome research 23 (7) (2024)
Van-An Duong, Altai Enkhbayar, Nobel Bhasin, Lakmini Senavirathna, Eva C Preisner, Kristi L Hoffman, Richa Shukla, Robert R Jenq, Kai Cheng, Mary P Bronner, Daniel Figeys, Robert A Britton, Sheng Pan, Ru Chen
A complementary metaproteomic approach to interrogate microbiome cultivated from clinical colon biopsies. Proteomics (2024)
Emily E F Brown, Angela Wang, Marybeth Creskey, Sarah E Cummings, Jessie R Lavoie, Zhibin Ning, Jianjun Li, Daniel Figeys, Rui Chen, Xu Zhang
Multilevel Proteomic Profiling of Colorectal Adenocarcinoma Caco-2 Cell Differentiation to Characterize an Intestinal Epithelial Model. Journal of proteome research (2024)
Haonan Duan, Zhibin Ning, Ailing Zhang, Daniel Figeys
Spectral entropy as a measure of the metaproteome complexity. Proteomics (2024)
Emily E F Brown, Angela Wang, Marybeth Creskey, Sarah E Cummings, Jessie R Lavoie, Zhibin Ning, Jianjun Li, Daniel Figeys, Rui Chen, Xu Zhang
Multilevel Proteomic Profiling of Colorectal Adenocarcinoma Caco-2 Cell Differentiation to Characterize an Intestinal Epithelial Model. Journal of proteome research 23 (7) (2024)
Yubing Liu, Maria Bilen, Marie-Michelle McNicoll, Richard A Harris, Bensun C Fong, Mohamed Ariff Iqbal, Smitha Paul, Janice Mayne, Krystal Walker, Jing Wang, Daniel Figeys, Ruth S Slack
Early postnatal defects in neurogenesis in the 3xTg mouse model of Alzheimer's disease. Cell death & disease 14 (2) (2023)
Leyuan Li, Tong Wang, Zhibin Ning, Xu Zhang, James Butcher, Joeselle M Serrana, Caitlin M A Simopoulos, Janice Mayne, Alain Stintzi, David R Mack, Yang-Yu Liu, Daniel Figeys
Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics. Nature communications 14 (1) (2023)
Yubing Liu, Maria Bilen, Marie-Michelle McNicoll, Richard A Harris, Bensun C Fong, Mohamed Ariff Iqbal, Smitha Paul, Janice Mayne, Krystal Walker, Jing Wang, Daniel Figeys, Ruth S Slack
Early postnatal defects in neurogenesis in the 3xTg mouse model of Alzheimer's disease. Cell death & disease 14 (2) (2023)
Yubing Liu, Maria Bilen, Marie-Michelle McNicoll, Richard A Harris, Bensun C Fong, Mohamed Ariff Iqbal, Smitha Paul, Janice Mayne, Krystal Walker, Jing Wang, Daniel Figeys, Ruth S Slack
Early postnatal defects in neurogenesis in the 3xTg mouse model of Alzheimer's disease. Cell death & disease 14 (2) (2023)
Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M Serrana, Janice Mayne, Daniel Figeys
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Journal of proteome research 22 (2) (2022)
Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M Serrana, Janice Mayne, Daniel Figeys
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Journal of proteome research 22 (2) (2022)
Leyuan Li, Zhibin Ning, Kai Cheng, Xu Zhang, Caitlin M A Simopoulos, Daniel Figeys
iMetaLab Suite: A one-stop toolset for metaproteomics. iMeta 1 (2) (2022)
Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M Serrana, Janice Mayne, Daniel Figeys
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Journal of proteome research (2022)
Caitlin M A Simopoulos, Zhibin Ning, Leyuan Li, Mona M Khamis, Xu Zhang, Mathieu Lavallée-Adam, Daniel Figeys
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening. mSystems 7 (4) (2022)
Leyuan Li, Zhibin Ning, Kai Cheng, Xu Zhang, Caitlin M A Simopoulos, Daniel Figeys
iMetaLab Suite: A one-stop toolset for metaproteomics. iMeta 1 (2) (2022)
Marybeth Creskey, Leyuan Li, Zhibin Ning, Emily E F Brown, Janice Mayne, Krystal Walker, Anna Ampaw, Robert Ben, Xu Zhang, Daniel Figeys
An economic and robust TMT labeling approach for high throughput proteomic and metaproteomic analysis. Proteomics (2022)
Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M Serrana, Janice Mayne, Daniel Figeys
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Journal of proteome research 22 (2) (2022)
Zhongzhi Sun, Wenju Wang, Leyuan Li, Xu Zhang, Zhibin Ning, Janice Mayne, Krystal Walker, Alain Stintzi, Daniel Figeys
Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome. Microbiology spectrum 10 (4) (2022)
Haonan Duan, Kai Cheng, Zhibin Ning, Leyuan Li, Janice Mayne, Zhongzhi Sun, Daniel Figeys
Assessing the Dark Field of Metaproteome. Analytical chemistry 94 (45) (2022)
Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M Serrana, Janice Mayne, Daniel Figeys
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Journal of proteome research 22 (2) (2022)
Xu Zhang, Krystal Walker, Janice Mayne, Leyuan Li, Zhibin Ning, Alain Stintzi, Daniel Figeys
Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics. Gut microbes 14 (1) (2022)
Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M Serrana, Janice Mayne, Daniel Figeys
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Journal of proteome research 22 (2) (2022)
Amanda E Starr, Shelley A Deeke, Zhibin Ning, Joseph de Nanassy, Ruth Singleton, Eric I Benchimol, David R Mack, Alain Stintzi, Daniel Figeys
Associations between Cellular Energy and Pediatric Inflammatory Bowel Disease Patient Response to Treatment. Journal of proteome research 20 (9) (2021)
Xu Zhang, Kai Cheng, Zhibin Ning, Janice Mayne, Krystal Walker, Hao Chi, Charles L Farnsworth, Kimberly Lee, Daniel Figeys
Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota. Analytical chemistry 93 (17) (2021)
Sabrina Robichaud, Garrett Fairman, Viyashini Vijithakumar, Esther Mak, David P Cook, Alexander R Pelletier, Sylvain Huard, Barbara C Vanderhyden, Daniel Figeys, Mathieu Lavallée-Adam, Kristin Baetz, Mireille Ouimet
Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells. Autophagy 17 (11) (2021)
Leyuan Li, Lu Chang, Xu Zhang, Zhibin Ning, Janice Mayne, Yang Ye, Alain Stintzi, Jia Liu, Daniel Figeys
Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes. Gut microbes 11 (5) (2020)
Zikai Hao, Leyuan Li, Zhibin Ning, Xu Zhang, Janice Mayne, Kai Cheng, Krystal Walker, Hong Liu, Daniel Figeys
Metaproteomics Reveals Growth Phase-Dependent Responses of an In Vitro Gut Microbiota to Metformin. Journal of the American Society for Mass Spectrometry 31 (7) (2020)
Jiaqin Wang, Xu Zhang, Leyuan Li, Zhibin Ning, Janice Mayne, Cian Schmitt-Ulms, Krystal Walker, Kai Cheng, Daniel Figeys
Differential Lysis Approach Enables Selective Extraction of Taxon-Specific Proteins for Gut Metaproteomics. Analytical chemistry 92 (7) (2020)
Patrick Smyth, Xu Zhang, Zhibin Ning, Janice Mayne, Jasmine Isabelle Moore, Krystal Walker, Mathieu Lavallée-Adam, Daniel Figeys
Studying the Temporal Dynamics of the Gut Microbiota Using Metabolic Stable Isotope Labeling and Metaproteomics. Analytical chemistry 92 (24) (2020)
Kai Cheng, Zhibin Ning, Xu Zhang, Leyuan Li, Bo Liao, Janice Mayne, Daniel Figeys
MetaLab 2.0 Enables Accurate Post-Translational Modifications Profiling in Metaproteomics. Journal of the American Society for Mass Spectrometry 31 (7) (2020)
Leyuan Li, Zhibin Ning, Xu Zhang, Janice Mayne, Kai Cheng, Alain Stintzi, Daniel Figeys
RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs. Microbiome 8 (1) (2020)
Alexander R Pelletier, Yun-En Chung, Zhibin Ning, Nora Wong, Daniel Figeys, Mathieu Lavallée-Adam
MealTime-MS: A Machine Learning-Guided Real-Time Mass Spectrometry Analysis for Protein Identification and Efficient Dynamic Exclusion. Journal of the American Society for Mass Spectrometry 31 (7) (2020)
Xu Zhang, Zhibin Ning, Janice Mayne, Yidai Yang, Shelley A Deeke, Krystal Walker, Charles L Farnsworth, Matthew P Stokes, Jean-François Couture, David Mack, Alain Stintzi, Daniel Figeys
Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn's disease. Nature communications 11 (1) (2020)
Xu Zhang, Daniel Figeys
Perspective and Guidelines for Metaproteomics in Microbiome Studies. Journal of proteome research 18 (6) (2019)
Danielle L Peters, Wenju Wang, Xu Zhang, Zhibin Ning, Janice Mayne, Daniel Figeys
Metaproteomic and Metabolomic Approaches for Characterizing the Gut Microbiome. Proteomics 19 (16) (2019)
Xu Zhang, Leyuan Li, James Butcher, Alain Stintzi, Daniel Figeys
Advancing functional and translational microbiome research using meta-omics approaches. Microbiome 7 (1) (2019)
Henghui Li, Leyuan Li, Kai Cheng, Zhibin Ning, Janice Mayne, Xu Zhang, Krystal Walker, Rui Chen, Susan Twine, Jianjun Li, Daniel Figeys
Chemoenzymatic Method for Glycoproteomic N-Glycan Type Quantitation. Analytical chemistry 92 (1) (2019)
Paula Adler, Janice Mayne, Krystal Walker, Zhibin Ning, Daniel Figeys
Therapeutic Targeting of Casein Kinase 1δ/ε in an Alzheimer's Disease Mouse Model. Journal of proteome research 18 (9) (2019)
Xu Zhang, Wendong Chen, Zhibin Ning, Janice Mayne, David Mack, Alain Stintzi, Ruijun Tian, Daniel Figeys
Deep Metaproteomics Approach for the Study of Human Microbiomes. Analytical chemistry 89 (17) (2017)
Leyuan Li, Xu Zhang, Zhibin Ning, Janice Mayne, Jasmine I Moore, James Butcher, Cheng-Kang Chiang, David Mack, Alain Stintzi, Daniel Figeys
Evaluating in Vitro Culture Medium of Gut Microbiome with Orthogonal Experimental Design and a Metaproteomics Approach. Journal of proteome research 17 (1) (2017)
Amanda E Starr, Shelley A Deeke, Leyuan Li, Xu Zhang, Rachid Daoud, James Ryan, Zhibin Ning, Kai Cheng, Linh V H Nguyen, Elias Abou-Samra, Mathieu Lavallée-Adam, Daniel Figeys
Proteomic and Metaproteomic Approaches to Understand Host-Microbe Interactions. Analytical chemistry 90 (1) (2017)
Graeme S V McDowell, Alexandre P Blanchard, Graeme P Taylor, Daniel Figeys, Stephen Fai, Steffany A L Bennett
Predicting glycerophosphoinositol identities in lipidomic datasets using VaLID (Visualization and Phospholipid Identification)--an online bioinformatic search engine. BioMed research international 2014 (2014)
Mohammad Parsanejad, Yi Zhang, Dianbo Qu, Isabella Irrcher, Maxime W C Rousseaux, Hossein Aleyasin, Fatemeh Kamkar, Steve Callaghan, Ruth S Slack, Tak W Mak, Stephen Lee, Daniel Figeys, David S Park
Regulation of the VHL/HIF-1 pathway by DJ-1. The Journal of neuroscience : the official journal of the Society for Neuroscience 34 (23) (2014)