iMeta

Publications

volume 3, number 3, 2024

Sergio Andreu-Sánchez, Shahzad Ahmad, Alexander Kurilshikov, Marian Beekman, Mohsen Ghanbari, Martijn van Faassen, Inge C L van den Munckhof, Marinka Steur, Amy Harms, Thomas Hankemeier, Mohammad Arfan Ikram, Maryam Kavousi, Trudy G Voortman, Robert Kraaij, Mihai M Netea, Joost H W Rutten, Niels P Riksen, Alexandra Zhernakova, Folkert Kuipers, Pieternella Eline Slagboom, Cornelia M van Duijn, Jingyuan Fu, Dina Vojinovic
Unraveling interindividual variation of trimethylamine N -oxide and its precursors at the population level. iMeta 3 (3) (2024)
Wenyu Zhen, Zifei Wang, Qing Wang, Wansu Sun, Rui Wang, Wenhao Zhang, Yulong Zhang, Wengang Qin, Bang Li, Qingqing Wang, Biao Hong, Yicheng Yang, Jing Xu, Siyu Ma, Ming Da, Linfei Feng, Xiaodong Zang, Xuming Mo, Xiaoyu Sun, Mingyue Wu, Junji Xu, Jianguang Xu, Yuan Huang, Hengguo Zhang
Cardiovascular disease therapeutics via engineered oral microbiota: Applications and perspective. iMeta 3 (3) (2024)
Pengfei Jin, Xiong Lin, Wenfeng Xu, Kangning Li, Xiaoxiao Zhao, Sirui Guo, Zinan Zhao, Lujie Jiang, Feng Liao, Longgang Chang, Min Wang, Yanmin Liu, Shaolei Huang, Zhangran Chen, Fusui Ji
The feasibility of using pathobiome strains as live biotherapeutic products for human use. iMeta 3 (3) (2024)
Yi Bao, Yaxin Chen, Lizhu Lin, Jingyi Li, Xinli Liu, Gang Wang, Yueqi Li, Yao Lin, Yajing Chen, Lijuan Zhou, Yawen Qi, Yufang Xie, Zhenrui Lin, Zhe Sun, Yuwen Fan, Jinjing Jiang, Feiyu Zhang, Hubin Chen, Jiemei Chu, Jiegang Huang, Xuena Chen, Hao Liang, Shuaiyi Liang, Sanqi An
GutUDB: A comprehensive multiomics database for intestinal diseases. iMeta 3 (3) (2024)
Chao Wang, Ziyue Shi, Aogui Li, Tianyi Geng, Lingli Liu, Weixing Liu
Long-term nitrogen input reduces soil bacterial network complexity by shifts in life history strategy in temperate grassland. iMeta 3 (3) (2024)
Sergio Andreu-Sánchez, Shahzad Ahmad, Alexander Kurilshikov, Marian Beekman, Mohsen Ghanbari, Martijn van Faassen, Inge C L van den Munckhof, Marinka Steur, Amy Harms, Thomas Hankemeier, Mohammad Arfan Ikram, Maryam Kavousi, Trudy G Voortman, Robert Kraaij, Mihai M Netea, Joost H W Rutten, Niels P Riksen, Alexandra Zhernakova, Folkert Kuipers, Pieternella Eline Slagboom, Cornelia M van Duijn, Jingyuan Fu, Dina Vojinovic
Unraveling interindividual variation of trimethylamine N -oxide and its precursors at the population level. iMeta 3 (3) (2024)
Lamei Wang, Javier A Villafuerte Gálvez, Christina Lee, Shengru Wu, Ciaran P Kelly, Xinhua Chen, Yangchun Cao
Understanding host immune responses in Clostridioides difficile infection: Implications for pathogenesis and immunotherapy. iMeta 3 (3) (2024)
Chao Wang, Ziyue Shi, Aogui Li, Tianyi Geng, Lingli Liu, Weixing Liu
Long-term nitrogen input reduces soil bacterial network complexity by shifts in life history strategy in temperate grassland. iMeta 3 (3) (2024)
Mei Yang, Tong Chen, Yong-Xin Liu, Luqi Huang
Visualizing set relationships: EVenn's comprehensive approach to Venn diagrams. iMeta 3 (3) (2024)
Wei Chong, Huicheng Ren, Hao Chen, Kang Xu, Xingyu Zhu, Yuan Liu, Yaodong Sang, Han Li, Jin Liu, Chunshui Ye, Liang Shang, Changqing Jing, Leping Li
Clinical features and molecular landscape of cuproptosis signature-related molecular subtype in gastric cancer. iMeta 3 (3) (2024)
Jiayu Zhang, Aixi Tang, Tao Jin, Deshou Sun, Fangliang Guo, Huaxin Lei, Lin Lin, Wensheng Shu, Pingfeng Yu, Xiaoyan Li, Bing Li
A panoramic view of the virosphere in three wastewater treatment plants by integrating viral-like particle-concentrated and traditional non-concentrated metagenomic approaches. iMeta 3 (3) (2024)
Yinzhao Wang, Liuyang Li, Qiang Li, Yaoxun Hu, Wenjie Li, Zhile Wu, Hungchia Huang, Zhenbo Lv, Wan Liu, Ruifang Cao, Guoping Zhao, Fengping Wang, Guoqing Zhang
MASH-Ocean 1.0: Interactive platform for investigating microbial diversity, function, and biogeography with marine metagenomic data. iMeta 3 (3) (2024)
Wenyu Zhen, Zifei Wang, Qing Wang, Wansu Sun, Rui Wang, Wenhao Zhang, Yulong Zhang, Wengang Qin, Bang Li, Qingqing Wang, Biao Hong, Yicheng Yang, Jing Xu, Siyu Ma, Ming Da, Linfei Feng, Xiaodong Zang, Xuming Mo, Xiaoyu Sun, Mingyue Wu, Junji Xu, Jianguang Xu, Yuan Huang, Hengguo Zhang
Cardiovascular disease therapeutics via engineered oral microbiota: Applications and perspective. iMeta 3 (3) (2024)

volume 3, number 4, 2024

Yupeng Zhang, Chunyuan Yang, Jinhao Wang, Lixin Wang, Yan Zhao, Longqing Sun, Wei Sun, Yunping Zhu, Jingli Li, Songfeng Wu
BioLadder: A bioinformatic platform primarily focused on proteomic data analysis. iMeta 3 (4) (2024)
Mingyan Geng, Min Li, Yun Li, Jiaying Zhu, Chuqing Sun, Yan Wang, Wei-Hua Chen
A universal oral microbiome-based signature for periodontitis. iMeta 3 (4) (2024)
Xin Wei, Li Guo, Hongliu Cai, Silan Gu, Lingling Tang, Yuxin Leng, Minghui Cheng, Guojun He, Yijiao Han, Xindie Ren, Baoyue Lin, Longxian Lv, Huanzhang Shao, Mingqiang Wang, Hongyu Wang, Dan Dang, Shengfeng Wang, Nan Wang, Peng Shen, Qianqian Wang, Yinghe Xu, Yongpo Jiang, Ning Zhang, Xuwei He, Xuntao Deng, Muhua Dai, Lin Zhong, Yonghui Xiong, Yujie Pan, Kankai Tang, Fengqi Liu, Bin Yang, Lili Ren, Jianwei Wang, Chao Jiang, Lingtong Huang
MASS cohort: Multicenter, longitudinal, and prospective study of the role of microbiome in severe pneumonia and host susceptibility. iMeta 3 (4) (2024)
Chang Han, Caiping Shi, Linmeng Liu, Jichen Han, Qianqian Yang, Yan Wang, Xiaodan Li, Wenyao Fu, Hao Gao, Huasheng Huang, Xianglin Zhang, Kegang Yu
Majorbio Cloud 2024: Update single-cell and multiomics workflows. iMeta 3 (4) (2024)
Mingyan Geng, Min Li, Yun Li, Jiaying Zhu, Chuqing Sun, Yan Wang, Wei-Hua Chen
A universal oral microbiome-based signature for periodontitis. iMeta 3 (4) (2024)
Ming-Hao Lv, Wen-Chong Shi, Ming-Cong Li, Bo Zhou, Yong-Xin Liu, Zheng Gao
Ms gene and Mr gene: Microbial-mediated spatiotemporal communication between plants. iMeta 3 (4) (2024)
Ming-Yuan Xue, Yun-Yi Xie, Xin-Wei Zang, Yi-Fan Zhong, Xiao-Jiao Ma, Hui-Zeng Sun, Jian-Xin Liu
Deciphering functional groups of rumen microbiome and their underlying potentially causal relationships in shaping host traits. iMeta 3 (4) (2024)
Hao Zhang, Jiawan Wang, Jianghua Shen, Siqi Chen, Hailong Yuan, Xuan Zhang, Xu Liu, Ying Yu, Xinran Li, Zeyu Gao, Yaohui Wang, Jun Wang, Moshi Song
Prophylactic supplementation with Bifidobacterium infantis or its metabolite inosine attenuates cardiac ischemia/reperfusion injury. iMeta 3 (4) (2024)
Yi Wang, Siyuan Yang, Bing Han, Xiufang Du, Huali Sun, Yufeng Du, Yinli Liu, Panpan Lu, Jinyu Di, Laurence Don Wai Luu, Xiao Lv, Songnian Hu, Linghang Wang, Rongmeng Jiang
Single-cell landscape revealed immune characteristics associated with disease phases in brucellosis patients. iMeta 3 (4) (2024)
Chang Han, Caiping Shi, Linmeng Liu, Jichen Han, Qianqian Yang, Yan Wang, Xiaodan Li, Wenyao Fu, Hao Gao, Huasheng Huang, Xianglin Zhang, Kegang Yu
Majorbio Cloud 2024: Update single-cell and multiomics workflows. iMeta 3 (4) (2024)
Yaohua Wei, Feng Shen, Huidong Song, Ruifang Zhao, Weiyue Feng, Yue Pan, Xiaobo Li, Huanling Yu, Giuseppe Familiari, Michela Relucenti, Michael Aschner, Hanping Shi, Rui Chen, Guangjun Nie, Hanqing Chen
The challenge and opportunity of gut microbiota-targeted nanomedicine for colorectal cancer therapy. iMeta 3 (4) (2024)
Chunling Liang, Jiejun Qi, Wenyuan Wu, Xingyu Chen, Mingyu Li, Yu Liu, Ziheng Peng, Shi Chen, Haibo Pan, Beibei Chen, Jiai Liu, Yihe Wang, Sanfeng Chen, Sen Du, Gehong Wei, Shuo Jiao
Smaller microorganisms outcompete larger ones in resistance and functional effects under disturbed agricultural ecosystems. iMeta 3 (4) (2024)
Jie Yu, Weicheng Li, Ruibo Xu, Xiaoye Liu, Guangqi Gao, Lai-Yu Kwok, Yongfu Chen, Zhihong Sun, Wenjun Liu, Heping Zhang
Probio-M9, a breast milk-originated probiotic, alleviates mastitis and enhances antibiotic efficacy: Insights into the gut-mammary axis. iMeta 3 (4) (2024)
Yi Wang, Siyuan Yang, Bing Han, Xiufang Du, Huali Sun, Yufeng Du, Yinli Liu, Panpan Lu, Jinyu Di, Laurence Don Wai Luu, Xiao Lv, Songnian Hu, Linghang Wang, Rongmeng Jiang
Single-cell landscape revealed immune characteristics associated with disease phases in brucellosis patients. iMeta 3 (4) (2024)
Jie Yu, Weicheng Li, Ruibo Xu, Xiaoye Liu, Guangqi Gao, Lai-Yu Kwok, Yongfu Chen, Zhihong Sun, Wenjun Liu, Heping Zhang
Probio-M9, a breast milk-originated probiotic, alleviates mastitis and enhances antibiotic efficacy: Insights into the gut-mammary axis. iMeta 3 (4) (2024)
Haibao Tang, Vivek Krishnakumar, Xiaofei Zeng, Zhougeng Xu, Adam Taranto, Johnathan S Lomas, Yixing Zhang, Yumin Huang, Yibin Wang, Won Cheol Yim, Jisen Zhang, Xingtan Zhang
JCVI: A versatile toolkit for comparative genomics analysis. iMeta 3 (4) (2024)
Chang Han, Caiping Shi, Linmeng Liu, Jichen Han, Qianqian Yang, Yan Wang, Xiaodan Li, Wenyao Fu, Hao Gao, Huasheng Huang, Xianglin Zhang, Kegang Yu
Majorbio Cloud 2024: Update single-cell and multiomics workflows. iMeta 3 (4) (2024)
Ming-Hao Lv, Wen-Chong Shi, Ming-Cong Li, Bo Zhou, Yong-Xin Liu, Zheng Gao
Ms gene and Mr gene: Microbial-mediated spatiotemporal communication between plants. iMeta 3 (4) (2024)
Dacheng Wang, Yingqiao Wan, Dekun Liu, Ning Wang, Jingni Wu, Qin Gu, Huijun Wu, Xuewen Gao, Yiming Wang
Immune-enriched phyllosphere microbiome in rice panicle exhibits protective effects against rice blast and rice false smut diseases. iMeta 3 (4) (2024)
Jing Li, Si-Yuan Wang, Kai-Xin Yan, Pan Wang, Jie Jiao, Yi-Dan Wang, Mu-Lei Chen, Ying Dong, Jiu-Chang Zhong
Intestinal microbiota by angiotensin receptor blocker therapy exerts protective effects against hypertensive damages. iMeta 3 (4) (2024)
Chunling Liang, Jiejun Qi, Wenyuan Wu, Xingyu Chen, Mingyu Li, Yu Liu, Ziheng Peng, Shi Chen, Haibo Pan, Beibei Chen, Jiai Liu, Yihe Wang, Sanfeng Chen, Sen Du, Gehong Wei, Shuo Jiao
Smaller microorganisms outcompete larger ones in resistance and functional effects under disturbed agricultural ecosystems. iMeta 3 (4) (2024)
Yupeng Zhang, Chunyuan Yang, Jinhao Wang, Lixin Wang, Yan Zhao, Longqing Sun, Wei Sun, Yunping Zhu, Jingli Li, Songfeng Wu
BioLadder: A bioinformatic platform primarily focused on proteomic data analysis. iMeta 3 (4) (2024)
Wen-Bing Jin, Chun-Jun Guo
Genetic manipulations of nonmodel gut microbes. iMeta 3 (4) (2024)
Wen-Bing Jin, Chun-Jun Guo
Genetic manipulations of nonmodel gut microbes. iMeta 3 (4) (2024)
Ming-Yuan Xue, Yun-Yi Xie, Xin-Wei Zang, Yi-Fan Zhong, Xiao-Jiao Ma, Hui-Zeng Sun, Jian-Xin Liu
Deciphering functional groups of rumen microbiome and their underlying potentially causal relationships in shaping host traits. iMeta 3 (4) (2024)
Xin Wei, Li Guo, Hongliu Cai, Silan Gu, Lingling Tang, Yuxin Leng, Minghui Cheng, Guojun He, Yijiao Han, Xindie Ren, Baoyue Lin, Longxian Lv, Huanzhang Shao, Mingqiang Wang, Hongyu Wang, Dan Dang, Shengfeng Wang, Nan Wang, Peng Shen, Qianqian Wang, Yinghe Xu, Yongpo Jiang, Ning Zhang, Xuwei He, Xuntao Deng, Muhua Dai, Lin Zhong, Yonghui Xiong, Yujie Pan, Kankai Tang, Fengqi Liu, Bin Yang, Lili Ren, Jianwei Wang, Chao Jiang, Lingtong Huang
MASS cohort: Multicenter, longitudinal, and prospective study of the role of microbiome in severe pneumonia and host susceptibility. iMeta 3 (4) (2024)
Baicheng Huang, Ling Guo, Hang Yin, Yue Wu, Zihan Zeng, Sujie Xu, Yufeng Lou, Zhimin Ai, Weiqiang Zhang, Xingchi Kan, Qian Yu, Shimin Du, Chao Li, Lina Wu, Xingxu Huang, Shengqi Wang, Xinjie Wang
Deep learning enhancing guide RNA design for CRISPR/Cas12a-based diagnostics. iMeta 3 (4) (2024)
Baicheng Huang, Ling Guo, Hang Yin, Yue Wu, Zihan Zeng, Sujie Xu, Yufeng Lou, Zhimin Ai, Weiqiang Zhang, Xingchi Kan, Qian Yu, Shimin Du, Chao Li, Lina Wu, Xingxu Huang, Shengqi Wang, Xinjie Wang
Deep learning enhancing guide RNA design for CRISPR/Cas12a-based diagnostics. iMeta 3 (4) (2024)
Dacheng Wang, Yingqiao Wan, Dekun Liu, Ning Wang, Jingni Wu, Qin Gu, Huijun Wu, Xuewen Gao, Yiming Wang
Immune-enriched phyllosphere microbiome in rice panicle exhibits protective effects against rice blast and rice false smut diseases. iMeta 3 (4) (2024)
Yaohua Wei, Feng Shen, Huidong Song, Ruifang Zhao, Weiyue Feng, Yue Pan, Xiaobo Li, Huanling Yu, Giuseppe Familiari, Michela Relucenti, Michael Aschner, Hanping Shi, Rui Chen, Guangjun Nie, Hanqing Chen
The challenge and opportunity of gut microbiota-targeted nanomedicine for colorectal cancer therapy. iMeta 3 (4) (2024)
Jing Li, Si-Yuan Wang, Kai-Xin Yan, Pan Wang, Jie Jiao, Yi-Dan Wang, Mu-Lei Chen, Ying Dong, Jiu-Chang Zhong
Intestinal microbiota by angiotensin receptor blocker therapy exerts protective effects against hypertensive damages. iMeta 3 (4) (2024)
Lingyan Ma, Wentao Lyu, Tao Zeng, Wen Wang, Qu Chen, Jiang-Chao Zhao, Guolong Zhang, Lizhi Lu, Hua Yang, Yingping Xiao
Duck gut metagenome reveals the microbiome signatures linked to intestinal regional, temporal development, and rearing condition. iMeta 3 (4) (2024)
Haibao Tang, Vivek Krishnakumar, Xiaofei Zeng, Zhougeng Xu, Adam Taranto, Johnathan S Lomas, Yixing Zhang, Yumin Huang, Yibin Wang, Won Cheol Yim, Jisen Zhang, Xingtan Zhang
JCVI: A versatile toolkit for comparative genomics analysis. iMeta 3 (4) (2024)
Jun Wang, Qian Li, Yuanwang Qiu, Simo Kitanovski, Chen Wang, Chenxia Zhang, Fahong Li, Xiaoguang Li, Zhenfeng Zhang, Lihua Huang, Jiming Zhang, Daniel Hoffmann, Mengji Lu, Hongzhou Lu
Cell-type-specific expression analysis of liver transcriptomics with clinical parameters to decipher the cause of intrahepatic inflammation in chronic hepatitis B. iMeta 3 (4) (2024)
Lingyan Ma, Wentao Lyu, Tao Zeng, Wen Wang, Qu Chen, Jiang-Chao Zhao, Guolong Zhang, Lizhi Lu, Hua Yang, Yingping Xiao
Duck gut metagenome reveals the microbiome signatures linked to intestinal regional, temporal development, and rearing condition. iMeta 3 (4) (2024)
Hao Zhang, Jiawan Wang, Jianghua Shen, Siqi Chen, Hailong Yuan, Xuan Zhang, Xu Liu, Ying Yu, Xinran Li, Zeyu Gao, Yaohui Wang, Jun Wang, Moshi Song
Prophylactic supplementation with Bifidobacterium infantis or its metabolite inosine attenuates cardiac ischemia/reperfusion injury. iMeta 3 (4) (2024)
Jun Wang, Qian Li, Yuanwang Qiu, Simo Kitanovski, Chen Wang, Chenxia Zhang, Fahong Li, Xiaoguang Li, Zhenfeng Zhang, Lihua Huang, Jiming Zhang, Daniel Hoffmann, Mengji Lu, Hongzhou Lu
Cell-type-specific expression analysis of liver transcriptomics with clinical parameters to decipher the cause of intrahepatic inflammation in chronic hepatitis B. iMeta 3 (4) (2024)