Daniel J Spakowicz (Daniel Spakowicz)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 50

Top Venues

Cancer research communications

Cells

bioRxiv : the preprint server for biology

International journal of molecular sciences

The Ohio State University

Yale University (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

The Ohio State University Apr 01 2018

United States

Research Assistant Professor :: Internal Medicine & Biomedical Informatics

Yale University - Mar 31 2018

United States

Postdoctoral Research Associate :: Molecular Biophysics and Biochemistry

The Jackson Laboratory for Genomic Medicine and Yale University

United States

Postdoctoral Researcher :: Microbial Genetics

Yale University

United States

Lecturer, Rainforest Expedition and Laboratory Course :: Molecular Biophysics and Biochemistry

Education History

Yale University Sep 02 2015 - May 14 2017

United States

MSC :: Computational Biology and Bioinformatics

Yale University

United States

PHD :: Molecular Biophysics and Biochemistry

University of Minnesota Twin Cities

United States

BSC :: Biochemistry, Ecology, Chemistry

Publications

Caroline E Dravillas, Samuel S Coleman, Rebecca Hoyd, Griffin Caryotakis, Louis Denko, Carlos H F Chan, Michelle L Churchman, Nicholas C Denko, Rebecca D Dodd, Islam El Jilany, Sheetal Hardikar, Marium Husain, Alexandra P Ikeguchi, Ning Jin, Qin Ma, Martin D McCarter, Afaf E G Osman, Lary A Robinson, Eric A Singer, Gabriel Tinoco, Cornelia M Ulrich, Yousef Zakharia, Daniel J Spakowicz, Ahmad A Tarhini, Aik Choon Tan
The tumor microbiome as a predictor of outcomes in patients with metastatic melanoma treated with immune checkpoint inhibitors. Cancer research communications (2024)
Martin Benej, Rebecca Hoyd, McKenzie Kreamer, Caroline E Dravillas, Dennis J Grencewicz, Fouad Choueiry, Carlos H F Chan, Yousef Zakharia, Qin Ma, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Lary A Robinson, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Gabriel Tinoco, Marium Husain, Ning Jin, Aik Choon Tan, Afaf E G Osman, Islam El Jilany, Gregory M Riedlinger, Bryan Paul Schneider, Katarina Benejova, Martin Kery, Ioanna Papandreou, Jiangjiang Zhu, Nicholas C Denko, Daniel J Spakowicz
The tumor microbiome reacts to hypoxia and can influence response to radiation treatment in colorectal cancer. Cancer research communications (2024)
Claire J Han, Xia Ning, Christin E Burd, Daniel J Spakowicz, Fode Tounkara, Matthew F Kalady, Anne M Noonan, Susan McCabe, Diane Von Ah
Chemotoxicity and Associated Risk Factors in Colorectal Cancer: A Systematic Review and Meta-Analysis. Cancers 16 (14) (2024)
Dharti Shantaram, Rebecca Hoyd, Alecia M Blaszczak, Linda Antwi, Anahita Jalilvand, Valerie P Wright, Joey Liu, Alan J Smith, David Bradley, William Lafuse, YunZhou Liu, Nyelia F Williams, Owen Snyder, Caroline Wheeler, Bradley Needleman, Stacy Brethauer, Sabrena Noria, David Renton, Kyle A Perry, Prabha Nagareddy, Daniel J Wozniak, Sahil Mahajan, Pranav S J B Rana, Maciej Pietrzak, Larry S Schlesinger, Daniel J Spakowicz, Willa Ann Hsueh
Obesity-associated microbiomes instigate visceral adipose tissue inflammation by recruitment of distinct neutrophils. Nature communications 15 (1) (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma, null null
A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset. Cancer research communications 4 (2) (2024)
Claire J Han, Xia Ning, Christin E Burd, Daniel J Spakowicz, Fode Tounkara, Matthew F Kalady, Anne M Noonan, Susan McCabe, Diane Von Ah
Chemotoxicity and Associated Risk Factors in Colorectal Cancer: A Systematic Review and Meta-Analysis. Cancers 16 (14) (2024)
Martin Benej, Rebecca Hoyd, McKenzie Kreamer, Caroline E Dravillas, Dennis J Grencewicz, Fouad Choueiry, Carlos H F Chan, Yousef Zakharia, Qin Ma, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Lary A Robinson, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Gabriel Tinoco, Marium Husain, Ning Jin, Aik C Tan, Afaf E G Osman, Islam Eljilany, Gregory Riedlinger, Bryan Paul Schneider, Katarina Benejova, Martin Kery, Ioanna Papandreou, Jiangjiang Zhu, Nicholas Denko, Daniel J Spakowicz, null null
The Tumor Microbiome Reacts to Hypoxia and Can Influence Response to Radiation Treatment in Colorectal Cancer. Cancer research communications 4 (7) (2024)
Xin Zhou, Xiaotao Shen, Jethro S Johnson, Daniel J Spakowicz, Melissa Agnello, Wenyu Zhou, Monica Avina, Alexander Honkala, Faye Chleilat, Shirley Jingyi Chen, Kexin Cha, Shana Leopold, Chenchen Zhu, Lei Chen, Lin Lyu, Daniel Hornburg, Si Wu, Xinyue Zhang, Chao Jiang, Liuyiqi Jiang, Lihua Jiang, Ruiqi Jian, Andrew W Brooks, Meng Wang, Kévin Contrepois, Peng Gao, Sophia Miryam Schüssler-Fiorenza Rose, Thi Dong Binh Tran, Hoan Nguyen, Alessandra Celli, Bo-Young Hong, Eddy J Bautista, Yair Dorsett, Paula Kavathas, Yanjiao Zhou, Erica Sodergren, George M Weinstock, Michael P Snyder
Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease. bioRxiv : the preprint server for biology (2024)
Caroline E Dravillas, Samuel S Coleman, Rebecca Hoyd, Griffin Caryotakis, Louis Denko, Carlos H F Chan, Michelle L Churchman, Nicholas C Denko, Rebecca D Dodd, Islam El Jilany, Sheetal Hardikar, Marium Husain, Alexandra P Ikeguchi, Ning Jin, Qin Ma, Martin D McCarter, Afaf E G Osman, Lary A Robinson, Eric A Singer, Gabriel Tinoco, Cornelia M Ulrich, Yousef Zakharia, Daniel J Spakowicz, Ahmad A Tarhini, Aik Choon Tan, null null
The Tumor Microbiome as a Predictor of Outcomes in Patients with Metastatic Melanoma Treated with Immune Checkpoint Inhibitors. Cancer research communications 4 (8) (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma, null null
A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset. Cancer research communications 4 (2) (2024)
Caroline E Dravillas, Samuel S Coleman, Rebecca Hoyd, Griffin Caryotakis, Louis Denko, Carlos H F Chan, Michelle L Churchman, Nicholas C Denko, Rebecca D Dodd, Islam El Jilany, Sheetal Hardikar, Marium Husain, Alexandra P Ikeguchi, Ning Jin, Qin Ma, Martin D McCarter, Afaf E G Osman, Lary A Robinson, Eric A Singer, Gabriel Tinoco, Cornelia M Ulrich, Yousef Zakharia, Daniel J Spakowicz, Ahmad A Tarhini, Aik Choon Tan, null null
The Tumor Microbiome as a Predictor of Outcomes in Patients with Metastatic Melanoma Treated with Immune Checkpoint Inhibitors. Cancer research communications 4 (8) (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma
A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset. Cancer research communications (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma
A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset. Cancer research communications (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma, null null
A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset. Cancer research communications 4 (2) (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma
A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset. Cancer research communications (2024)
Dharti Shantaram, Rebecca Hoyd, Alecia M Blaszczak, Linda Antwi, Anahita Jalilvand, Valerie P Wright, Joey Liu, Alan J Smith, David Bradley, William Lafuse, YunZhou Liu, Nyelia F Williams, Owen Snyder, Caroline Wheeler, Bradley Needleman, Stacy Brethauer, Sabrena Noria, David Renton, Kyle A Perry, Prabha Nagareddy, Daniel J Wozniak, Sahil Mahajan, Pranav S J B Rana, Maciej Pietrzak, Larry S Schlesinger, Daniel J Spakowicz, Willa Ann Hsueh
Obesity-associated microbiomes instigate visceral adipose tissue inflammation by recruitment of distinct neutrophils. Nature communications 15 (1) (2024)
Dharti Shantaram, Rebecca Hoyd, Alecia M Blaszczak, Linda Antwi, Anahita Jalilvand, Valerie P Wright, Joey Liu, Alan J Smith, David Bradley, William Lafuse, YunZhou Liu, Nyelia F Williams, Owen Snyder, Caroline Wheeler, Bradley Needleman, Stacy Brethauer, Sabrena Noria, David Renton, Kyle A Perry, Prabha Nagareddy, Daniel J Wozniak, Sahil Mahajan, Pranav S J B Rana, Maciej Pietrzak, Larry S Schlesinger, Daniel J Spakowicz, Willa Ann Hsueh
Obesity-associated microbiomes instigate visceral adipose tissue inflammation by recruitment of distinct neutrophils. Nature communications 15 (1) (2024)
Xin Zhou, Xiaotao Shen, Jethro S Johnson, Daniel J Spakowicz, Melissa Agnello, Wenyu Zhou, Monica Avina, Alexander Honkala, Faye Chleilat, Shirley Jingyi Chen, Kexin Cha, Shana Leopold, Chenchen Zhu, Lei Chen, Lin Lyu, Daniel Hornburg, Si Wu, Xinyue Zhang, Chao Jiang, Liuyiqi Jiang, Lihua Jiang, Ruiqi Jian, Andrew W Brooks, Meng Wang, Kévin Contrepois, Peng Gao, Sophia Miryam Schüssler-Fiorenza Rose, Thi Dong Binh Tran, Hoan Nguyen, Alessandra Celli, Bo-Young Hong, Eddy J Bautista, Yair Dorsett, Paula Kavathas, Yanjiao Zhou, Erica Sodergren, George M Weinstock, Michael P Snyder
Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease. bioRxiv : the preprint server for biology (2024)
Claire J Han, Xia Ning, Christin E Burd, Daniel J Spakowicz, Fode Tounkara, Matthew F Kalady, Anne M Noonan, Susan McCabe, Diane Von Ah
Chemotoxicity and Associated Risk Factors in Colorectal Cancer: A Systematic Review and Meta-Analysis. Cancers 16 (14) (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma
A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset. Cancer research communications (2024)
Laura Moulton Chambers, Paulina Haight, Julia Chalif, Yogita Mehra, Daniel J Spakowicz, Floor J Backes, Casey M Cosgrove, David M O'Malley, Roberto Vargas, Bradley R Corr, Victoria L Bae-Jump, Rebecca C Arend
Bridging the Gap from Bench to Bedside: A Call for In Vivo Preclinical Models to Advance Endometrial Cancer and Cervical Cancer Immuno-Oncology Research. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Xin Zhou, Xiaotao Shen, Jethro S Johnson, Daniel J Spakowicz, Melissa Agnello, Wenyu Zhou, Monica Avina, Alexander Honkala, Faye Chleilat, Shirley Jingyi Chen, Kexin Cha, Shana Leopold, Chenchen Zhu, Lei Chen, Lin Lyu, Daniel Hornburg, Si Wu, Xinyue Zhang, Chao Jiang, Liuyiqi Jiang, Lihua Jiang, Ruiqi Jian, Andrew W Brooks, Meng Wang, Kévin Contrepois, Peng Gao, Sophia Miryam Schüssler-Fiorenza Rose, Thi Dong Binh Tran, Hoan Nguyen, Alessandra Celli, Bo-Young Hong, Eddy J Bautista, Yair Dorsett, Paula Kavathas, Yanjiao Zhou, Erica Sodergren, George M Weinstock, Michael P Snyder
Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease. bioRxiv : the preprint server for biology (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma, null null
A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset. Cancer research communications 4 (2) (2024)
Martin Benej, Rebecca Hoyd, McKenzie Kreamer, Caroline E Dravillas, Dennis J Grencewicz, Fouad Choueiry, Carlos H F Chan, Yousef Zakharia, Qin Ma, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Lary A Robinson, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Gabriel Tinoco, Marium Husain, Ning Jin, Aik C Tan, Afaf E G Osman, Islam Eljilany, Gregory Riedlinger, Bryan Paul Schneider, Katarina Benejova, Martin Kery, Ioanna Papandreou, Jiangjiang Zhu, Nicholas Denko, Daniel J Spakowicz, null null
The Tumor Microbiome Reacts to Hypoxia and Can Influence Response to Radiation Treatment in Colorectal Cancer. Cancer research communications 4 (7) (2024)
Laura Moulton Chambers, Paulina Haight, Julia Chalif, Yogita Mehra, Daniel J Spakowicz, Floor J Backes, Casey M Cosgrove, David M O'Malley, Roberto Vargas, Bradley R Corr, Victoria L Bae-Jump, Rebecca C Arend
Bridging the Gap from Bench to Bedside: A Call for In Vivo Preclinical Models to Advance Endometrial Cancer and Cervical Cancer Immuno-oncology Research. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (14) (2024)
Laura Moulton Chambers, Paulina Haight, Julia Chalif, Yogita Mehra, Daniel J Spakowicz, Floor J Backes, Casey M Cosgrove, David M O'Malley, Roberto Vargas, Bradley R Corr, Victoria L Bae-Jump, Rebecca C Arend
Bridging the Gap from Bench to Bedside: A Call for In Vivo Preclinical Models to Advance Endometrial Cancer and Cervical Cancer Immuno-oncology Research. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (14) (2024)
Cankun Wang, Anjun Ma, Yingjie Li, Megan E McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma, null null
A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset. Cancer research communications 4 (2) (2024)
Caroline E Dravillas, Samuel S Coleman, Rebecca Hoyd, Griffin Caryotakis, Louis Denko, Carlos H F Chan, Michelle L Churchman, Nicholas C Denko, Rebecca D Dodd, Islam El Jilany, Sheetal Hardikar, Marium Husain, Alexandra P Ikeguchi, Ning Jin, Qin Ma, Martin D McCarter, Afaf E G Osman, Lary A Robinson, Eric A Singer, Gabriel Tinoco, Cornelia M Ulrich, Yousef Zakharia, Daniel J Spakowicz, Ahmad A Tarhini, Aik Choon Tan
The tumor microbiome as a predictor of outcomes in patients with metastatic melanoma treated with immune checkpoint inhibitors. Cancer research communications (2024)
Caroline E Dravillas, Samuel S Coleman, Rebecca Hoyd, Griffin Caryotakis, Louis Denko, Carlos H F Chan, Michelle L Churchman, Nicholas C Denko, Rebecca D Dodd, Islam El Jilany, Sheetal Hardikar, Marium Husain, Alexandra P Ikeguchi, Ning Jin, Qin Ma, Martin D McCarter, Afaf E G Osman, Lary A Robinson, Eric A Singer, Gabriel Tinoco, Cornelia M Ulrich, Yousef Zakharia, Daniel J Spakowicz, Ahmad A Tarhini, Aik Choon Tan, null null
The Tumor Microbiome as a Predictor of Outcomes in Patients with Metastatic Melanoma Treated with Immune Checkpoint Inhibitors. Cancer research communications 4 (8) (2024)
Martin Benej, Rebecca Hoyd, McKenzie Kreamer, Caroline E Dravillas, Dennis J Grencewicz, Fouad Choueiry, Carlos H F Chan, Yousef Zakharia, Qin Ma, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Lary A Robinson, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Gabriel Tinoco, Marium Husain, Ning Jin, Aik C Tan, Afaf E G Osman, Islam Eljilany, Gregory Riedlinger, Bryan Paul Schneider, Katarina Benejova, Martin Kery, Ioanna Papandreou, Jiangjiang Zhu, Nicholas Denko, Daniel J Spakowicz, null null
The Tumor Microbiome Reacts to Hypoxia and Can Influence Response to Radiation Treatment in Colorectal Cancer. Cancer research communications 4 (7) (2024)
Lingbin Meng, Katharine A Collier, Peng Wang, Zihai Li, Paul Monk, Amir Mortazavi, Zhiwei Hu, Daniel J Spakowicz, Linghua Zheng, Yuanquan Yang
Emerging Immunotherapy Approaches for Advanced Clear Cell Renal Cell Carcinoma. Cells 13 (1) (2023)
Min Hu, Samuel Coleman, Muhammad Zaki Hidayatullah Fadlullah, Daniel J Spakowicz, Christine H Chung, Aik Choon Tan
Deciphering the Tumor-Immune-Microbe Interactions in HPV-Negative Head and Neck Cancer. Genes 14 (8) (2023)
Caroline E Dravillas, Samuel S Coleman, Rebecca Hoyd, Louis Denko, Carlos H F Chan, Michelle L Churchman, Nicholas C Denko, Rebecca D Dodd, Islam El Jilany, Sheetal Hardikar, Marium Husain, Alexandra P Ikeguchi, Ning Jin, Qin Ma, Martin D McCarter, Afaf E G Osman, Lary A Robinson, Eric A Singer, Gabriel Tinoco, Cornelia M Ulrich, Yousef Zakharia, Daniel J Spakowicz, Ahmad A Tarhini, Aik Choon Tan
The tumor microbiome as a predictor of outcomes in patients with metastatic melanoma treated with immune checkpoint inhibitors. bioRxiv : the preprint server for biology (2023)
Rebecca Hoyd, Caroline E Dravillas, YunZhou Liu, Malvenderjit S Jagjit Singh, Mitchell Muniak, Ning Jin, Nicholas C Denko, David P Carbone, Xiaokui M Mo, Daniel J Spakowicz
Exogenous sequences in tumors and immune cells (exotic): a tool for estimating the microbe abundances in tumor RNAseq data. Cancer research communications (2023)
Cankun Wang, Anjun Ma, Megan E McNutt, Rebecca Hoyd, Caroline E Dravillas, Lary A Robinson, Carlos H F Chan, Yousef Zakharia, Rebecca D Dodd, Cornelia M Ulrich, Sheetal Hardikar, Michelle L Churchman, Ahmad A Tarhini, Eric A Singer, Alexandra P Ikeguchi, Martin D McCarter, Nicholas C Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E G Osman, Islam El Jilany, Aik Choon Tan, Samuel S Coleman, Louis Denko, Gregory M Riedlinger, Bryan Paul Schneider, Daniel J Spakowicz, Qin Ma
A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset. bioRxiv : the preprint server for biology (2023)
Lingbin Meng, Katharine A Collier, Peng Wang, Zihai Li, Paul Monk, Amir Mortazavi, Zhiwei Hu, Daniel J Spakowicz, Linghua Zheng, Yuanquan Yang
Emerging Immunotherapy Approaches for Advanced Clear Cell Renal Cell Carcinoma. Cells 13 (1) (2023)
Lingbin Meng, Katharine A Collier, Peng Wang, Zihai Li, Paul Monk, Amir Mortazavi, Zhiwei Hu, Daniel J Spakowicz, Linghua Zheng, Yuanquan Yang
Emerging Immunotherapy Approaches for Advanced Clear Cell Renal Cell Carcinoma. Cells 13 (1) (2023)
Lingbin Meng, Katharine A Collier, Peng Wang, Zihai Li, Paul Monk, Amir Mortazavi, Zhiwei Hu, Daniel J Spakowicz, Linghua Zheng, Yuanquan Yang
Emerging Immunotherapy Approaches for Advanced Clear Cell Renal Cell Carcinoma. Cells 13 (1) (2023)
Andrew C Johns, Mike Yang, Lai Wei, Madison Grogan, Sandipkumar H Patel, Mingjia Li, Marium Husain, Kari L Kendra, Gregory A Otterson, Jarred T Burkart, Daniel J Spakowicz, Rebecca Hoyd, Dwight H Owen, Carolyn J Presley
Association of medical comorbidities and cardiovascular disease with toxicity and survival among patients receiving checkpoint inhibitor immunotherapy. Cancer immunology, immunotherapy : CII (2023)
Lingbin Meng, Katharine A Collier, Peng Wang, Zihai Li, Paul Monk, Amir Mortazavi, Zhiwei Hu, Daniel J Spakowicz, Linghua Zheng, Yuanquan Yang
Emerging Immunotherapy Approaches for Advanced Clear Cell Renal Cell Carcinoma. Cells 13 (1) (2023)
Spencer R Rosario, Bowen Dong, Yali Zhang, Hua-Hsin Hsiao, Emily Isenhart, Jianmin Wang, Erin M Siegel, Arta M Monjazeb, Dwight H Owen, Prasenjit Dey, Fred K Tabung, Daniel J Spakowicz, William J Murphy, Stephen Edge, Sai Yendamuri, Sami Ibrahimi, Jill M Kolesar, Patsy H McDonald, Deepak Vadehra, Michelle Churchman, Song Liu, Pawel Kalinski, Sarbajit Mukherjee
Metabolic Dysregulation Explains the Diverse Impacts of Obesity in Males and Females with Gastrointestinal Cancers. International journal of molecular sciences 24 (13) (2023)
Lingbin Meng, Katharine A Collier, Peng Wang, Zihai Li, Paul Monk, Amir Mortazavi, Zhiwei Hu, Daniel J Spakowicz, Linghua Zheng, Yuanquan Yang
Emerging Immunotherapy Approaches for Advanced Clear Cell Renal Cell Carcinoma. Cells 13 (1) (2023)
Aastha Dhakal, Rituraj Upadhyay, Caroline E Dravillas, Rebecca Hoyd, Vidhya Karivedu, Mauricio E Gamez, Sasha Valentin, Meade Vanputten, Priyanka Bhateja, Marcelo R Bonomi, David J Konieczkowski, Sujith Baliga, Darrion L Mitchell, John C Grecula, Dukagjin M Blakaj, Nicholas C Denko, Sachin M Jhawar, Daniel J Spakowicz
Association between Tumor Microbiome and Hypoxia across Anatomic Subsites of Head and Neck Cancers. International journal of molecular sciences 23 (24) (2022)
Aastha Dhakal, Rituraj Upadhyay, Caroline E Dravillas, Rebecca Hoyd, Vidhya Karivedu, Mauricio E Gamez, Sasha Valentin, Meade Vanputten, Priyanka Bhateja, Marcelo R Bonomi, David J Konieczkowski, Sujith Baliga, Darrion L Mitchell, John C Grecula, Dukagjin M Blakaj, Nicholas C Denko, Sachin M Jhawar, Daniel J Spakowicz
Association between Tumor Microbiome and Hypoxia across Anatomic Subsites of Head and Neck Cancers. International journal of molecular sciences 23 (24) (2022)
Aastha Dhakal, Rituraj Upadhyay, Caroline E Dravillas, Rebecca Hoyd, Vidhya Karivedu, Mauricio E Gamez, Sasha Valentin, Meade Vanputten, Priyanka Bhateja, Marcelo R Bonomi, David J Konieczkowski, Sujith Baliga, Darrion L Mitchell, John C Grecula, Dukagjin M Blakaj, Nicholas C Denko, Sachin M Jhawar, Daniel J Spakowicz
Association between Tumor Microbiome and Hypoxia across Anatomic Subsites of Head and Neck Cancers. International journal of molecular sciences 23 (24) (2022)
Aastha Dhakal, Rituraj Upadhyay, Caroline E Dravillas, Rebecca Hoyd, Vidhya Karivedu, Mauricio E Gamez, Sasha Valentin, Meade Vanputten, Priyanka Bhateja, Marcelo R Bonomi, David J Konieczkowski, Sujith Baliga, Darrion L Mitchell, John C Grecula, Dukagjin M Blakaj, Nicholas C Denko, Sachin M Jhawar, Daniel J Spakowicz
Association between Tumor Microbiome and Hypoxia across Anatomic Subsites of Head and Neck Cancers. International journal of molecular sciences 23 (24) (2022)
Angel Qin, Songzhu Zhao, Abdul Miah, Lai Wei, Sandipkumar Patel, Andrew C Johns, Madison Grogan, Erin M Bertino, Kai He, Peter G Shields, Gregory P Kalemkerian, Shirish M Gadgeel, Nithya Ramnath, Bryan J Schneider, Khaled A Hassan, Nicholas Szerlip, Zoey Chopra, Sara Journey, Jessica Waninger, Daniel J Spakowicz, David P Carbone, Carolyn J Presley, Gregory A Otterson, Michael D Green, Dwight H Owen
Bone Metastases, Skeletal-Related Events, and Survival in Patients With Metastatic Non-Small Cell Lung Cancer Treated With Immune Checkpoint Inhibitors. Journal of the National Comprehensive Cancer Network : JNCCN 19 (8) (2021)
Jason J Liu, Daniel J Spakowicz, Garrett I Ash, Rebecca Hoyd, Rohan Ahluwalia, Andrew Zhang, Shaoke Lou, Donghoon Lee, Jing Zhang, Carolyn J Presley, Ann Greene, Matthew A Stults-Kolehmainen, Laura M Nally, Julien Steven Baker, Lisa M Fucito, Stuart A Weinzimer, Andrew V Papachristos, Mark B Gerstein
Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions. PLoS computational biology 17 (8) (2021)
Daniel J Spakowicz, Rebecca Hoyd, Mitchell Muniak, Marium Husain, James S Bassett, Lei Wang, Gabriel Tinoco, Sandip H Patel, Jarred Burkart, Abdul Miah, Mingjia Li, Andrew Johns, Madison Grogan, David P Carbone, Claire F Verschraegen, Kari L Kendra, Gregory A Otterson, Lang Li, Carolyn J Presley, Dwight H Owen
Inferring the role of the microbiome on survival in patients treated with immune checkpoint inhibitors: causal modeling, timing, and classes of concomitant medications. BMC cancer 20 (1) (2020)
Jethro S Johnson, Daniel J Spakowicz, Bo-Young Hong, Lauren M Petersen, Patrick C Demkowicz, Lei Chen, Shana R Leopold, Blake M Hanson, Hanako O Agresta, Mark Gerstein, Erica Sodergren, George M Weinstock
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis. Nature communications 10 (1) (2019)
Susan M Rundell, Daniel J Spakowicz, Alexandra Narváez-Trujillo, Scott A Strobel
The Biological Diversity and Production of Volatile Organic Compounds by Stem-Inhabiting Endophytic Fungi of Ecuador. Journal of fungi (Basel, Switzerland) 1 (3) (2015)

Daniel J Spakowicz.css-eqlu8i{font-size:small;padding-left:4px;} (Daniel Spakowicz)

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Daniel J Spakowicz (Daniel Spakowicz)