Daniel P Depledge (Daniel Depledge)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 63

Top Venues

Journal of virology

bioRxiv : the preprint server for biology

Nature communications

mSystems

New York University School of Medicine

This page only lists publications with an associated author ORCID identifier.

Affiliation History

New York University School of Medicine Jan 01 2019

United States

Research Assistant Professor :: Department of Medicine

New York University School of Medicine Sep 01 2017 - Dec 31 2018

United States

Postdoctoral Research Associate :: Department of Microbiology

Publications

Jonas Krueger, Matthias Preusse, Nicolas Oswaldo Gomez, Yannick Noah Frommeyer, Sebastian Doberenz, Anne Lorenz, Adrian Kordes, Svenja Grobe, Mathias Müsken, Daniel P Depledge, Sarah L Svensson, Siegfried Weiss, Volkhard Kaever, Andreas Pich, Cynthia Mira Sharma, Zoya Ignatova, Susanne Häußler
tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa . Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Esteban Flores Cortes, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active and replicating HSV-1 lytic chromatin. Journal of virology 98 (4) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology 98 (4) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology 98 (4) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore Guided Annotation of Transcriptome Architectures. bioRxiv : the preprint server for biology (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reply to Wang et al., "Ample evidence for the presence of HSV-1 LAT in non-neuronal ganglionic cells of mice and humans". Journal of virology 98 (6) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore guided annotation of transcriptome architectures. mSystems (2024)
Carina Jürgens, Nina Plückebaum, George Liam Ssebyatika, Sarah Beyer, Lucas Mendes-Monteiro, Jiayi Wang, Kai A Kropp, Víctor González-Motos, Lars Steinbrück, Birgit Ritter, Claudio Rodríguez-González, Heike Böning, Eirini Nikolouli, Paul R Kinchington, Nico Lachmann, Daniel P Depledge, Thomas Krey, Abel Viejo-Borbolla
Viral modulation of type II interferon increases T cell adhesion and virus spread. Nature communications 15 (1) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology 98 (4) (2024)
Jonas Krueger, Matthias Preusse, Nicolas Oswaldo Gomez, Yannick Noah Frommeyer, Sebastian Doberenz, Anne Lorenz, Adrian Kordes, Svenja Grobe, Mathias Müsken, Daniel P Depledge, Sarah L Svensson, Siegfried Weiss, Volkhard Kaever, Andreas Pich, Cynthia Mira Sharma, Zoya Ignatova, Susanne Häußler
tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa . Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology 98 (4) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology (2024)
Jonas Krueger, Matthias Preusse, Nicolas Oswaldo Gomez, Yannick Noah Frommeyer, Sebastian Doberenz, Anne Lorenz, Adrian Kordes, Svenja Grobe, Mathias Müsken, Daniel P Depledge, Sarah L Svensson, Siegfried Weiss, Volkhard Kaever, Andreas Pich, Cynthia Mira Sharma, Zoya Ignatova, Susanne Häußler
tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa . Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore guided annotation of transcriptome architectures. mSystems (2024)
Esteban Flores Cortes, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active and replicating HSV-1 lytic chromatin. Journal of virology 98 (4) (2024)
Esteban Flores Cortes, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active and replicating HSV-1 lytic chromatin. Journal of virology 98 (4) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore Guided Annotation of Transcriptome Architectures. bioRxiv : the preprint server for biology (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore guided annotation of transcriptome architectures. mSystems 9 (7) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology 98 (4) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore guided annotation of transcriptome architectures. mSystems 9 (7) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reply to Wang et al., "Ample evidence for the presence of HSV-1 LAT in non-neuronal ganglionic cells of mice and humans". Journal of virology 98 (6) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore guided annotation of transcriptome architectures. mSystems 9 (7) (2024)
Carina Jürgens, Nina Plückebaum, George Liam Ssebyatika, Sarah Beyer, Lucas Mendes-Monteiro, Jiayi Wang, Kai A Kropp, Víctor González-Motos, Lars Steinbrück, Birgit Ritter, Claudio Rodríguez-González, Heike Böning, Eirini Nikolouli, Paul R Kinchington, Nico Lachmann, Daniel P Depledge, Thomas Krey, Abel Viejo-Borbolla
Viral modulation of type II interferon increases T cell adhesion and virus spread. Nature communications 15 (1) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore guided annotation of transcriptome architectures. mSystems (2024)
Jonas Krueger, Matthias Preusse, Nicolas Oswaldo Gomez, Yannick Noah Frommeyer, Sebastian Doberenz, Anne Lorenz, Adrian Kordes, Svenja Grobe, Mathias Müsken, Daniel P Depledge, Sarah L Svensson, Siegfried Weiss, Volkhard Kaever, Andreas Pich, Cynthia Mira Sharma, Zoya Ignatova, Susanne Häußler
tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa . Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology 98 (4) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. Journal of virology 98 (4) (2024)
Carina Jürgens, Nina Plückebaum, George Liam Ssebyatika, Sarah Beyer, Lucas Mendes-Monteiro, Jiayi Wang, Kai A Kropp, Víctor González-Motos, Lars Steinbrück, Birgit Ritter, Claudio Rodríguez-González, Heike Böning, Eirini Nikolouli, Paul R Kinchington, Nico Lachmann, Daniel P Depledge, Thomas Krey, Abel Viejo-Borbolla
Viral modulation of type II interferon increases T cell adhesion and virus spread. Nature communications 15 (1) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore Guided Annotation of Transcriptome Architectures. bioRxiv : the preprint server for biology (2024)
Esteban Flores Cortes, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active and replicating HSV-1 lytic chromatin. Journal of virology (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore Guided Annotation of Transcriptome Architectures. bioRxiv : the preprint server for biology (2024)
Carina Jürgens, Nina Plückebaum, George Liam Ssebyatika, Sarah Beyer, Lucas Mendes-Monteiro, Jiayi Wang, Kai A Kropp, Víctor González-Motos, Lars Steinbrück, Birgit Ritter, Claudio Rodríguez-González, Heike Böning, Eirini Nikolouli, Paul R Kinchington, Nico Lachmann, Daniel P Depledge, Thomas Krey, Abel Viejo-Borbolla
Viral modulation of type II interferon increases T cell adhesion and virus spread. Nature communications 15 (1) (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore Guided Annotation of Transcriptome Architectures. bioRxiv : the preprint server for biology (2024)
Carina Jürgens, Nina Plückebaum, George Liam Ssebyatika, Sarah Beyer, Lucas Mendes-Monteiro, Jiayi Wang, Kai A Kropp, Víctor González-Motos, Lars Steinbrück, Birgit Ritter, Claudio Rodríguez-González, Heike Böning, Eirini Nikolouli, Paul R Kinchington, Nico Lachmann, Daniel P Depledge, Thomas Krey, Abel Viejo-Borbolla
Viral modulation of type II interferon increases T cell adhesion and virus spread. Nature communications 15 (1) (2024)
Esteban Flores Cortes, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active and replicating HSV-1 lytic chromatin. Journal of virology 98 (4) (2024)
Esteban Flores Cortes, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active and replicating HSV-1 lytic chromatin. Journal of virology 98 (4) (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reply to Wang et al., "Ample evidence for the presence of HSV-1 LAT in non-neuronal ganglionic cells of mice and humans". Journal of virology (2024)
Esteban Flores Cortes, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active and replicating HSV-1 lytic chromatin. Journal of virology (2024)
Jonathan S Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C Wilson, Daniel P Depledge
Nanopore Guided Annotation of Transcriptome Architectures. bioRxiv : the preprint server for biology (2024)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reply to Wang et al., "Ample evidence for the presence of HSV-1 LAT in non-neuronal ganglionic cells of mice and humans". Journal of virology 98 (6) (2024)
Carina Jürgens, Nina Plückebaum, George Liam Ssebyatika, Sarah Beyer, Lucas Mendes-Monteiro, Jiayi Wang, Kai A Kropp, Víctor González-Motos, Lars Steinbrück, Birgit Ritter, Claudio Rodríguez-González, Heike Böning, Eirini Nikolouli, Paul R Kinchington, Nico Lachmann, Daniel P Depledge, Thomas Krey, Abel Viejo-Borbolla
Viral modulation of type II interferon increases T cell adhesion and virus spread. Nature communications 15 (1) (2024)
Esteban Flores, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active HSV-1 lytic chromatin. bioRxiv : the preprint server for biology (2023)
Hannah M Burgess, Rebecca C Grande, Sofia Riccio, Ikshitaa Dinesh, Gerlof Sebastiaan Winkler, Daniel P Depledge, Ian Mohr
CCR4-NOT differentially controls host versus virus poly(a)-tail length and regulates HCMV infection. EMBO reports (2023)
Esteban Flores, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active HSV-1 lytic chromatin. bioRxiv : the preprint server for biology (2023)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. bioRxiv : the preprint server for biology (2023)
Esteban Flores, Sarah M Saddoris, Arryn K Owens, Rebecca Gibeault, Daniel P Depledge, Luis M Schang
Histone H2A variant H2A.B is enriched in transcriptionally active HSV-1 lytic chromatin. bioRxiv : the preprint server for biology (2023)
Sara Dochnal, Husain Y Merchant, Austin R Schinlever, Aleksandra Babnis, Daniel P Depledge, Angus C Wilson, Anna R Cliffe
DLK-Dependent Biphasic Reactivation of Herpes Simplex Virus Latency Established in the Absence of Antivirals. Journal of virology 96 (12) (2022)
Tomohiko Sadaoka, Daniel P Depledge, Labchan Rajbhandari, Judith Breuer, Arun Venkatesan, Jeffrey I Cohen
A Variant Allele in Varicella-Zoster Virus Glycoprotein B Selected during Production of the Varicella Vaccine Contributes to Its Attenuation. mBio 13 (4) (2022)
Jonathan S Abebe, Ruth Verstraten, Daniel P Depledge
Nanopore-Based Detection of Viral RNA Modifications. mBio 13 (3) (2022)
Jonathan S Abebe, Alexander M Price, Katharina E Hayer, Ian Mohr, Matthew D Weitzman, Angus C Wilson, Daniel P Depledge
DRUMMER-rapid detection of RNA modifications through comparative nanopore sequencing. Bioinformatics (Oxford, England) 38 (11) (2022)
Hannah M Burgess, Daniel P Depledge, Letitia Thompson, Kalanghad Puthankalam Srinivas, Rebecca C Grande, Elizabeth I Vink, Jonathan S Abebe, Wesley P Blackaby, Alan G Hendrick, Mark R Albertella, Tony Kouzarides, Kenneth A Stapleford, Angus C Wilson, Ian Mohr
Targeting the m6A RNA modification pathway blocks SARS-CoV-2 and HCoV-OC43 replication. Genes & development 35 (13-14) (2021)
Kalanghad Puthankalam Srinivas, Daniel P Depledge, Jonathan S Abebe, Stephen A Rice, Ian Mohr, Angus C Wilson
Widespread remodeling of the m6A RNA-modification landscape by a viral regulator of RNA processing and export. Proceedings of the National Academy of Sciences of the United States of America 118 (30) (2021)
Shirley E Braspenning, Georges G M G M Verjans, Tamana Mehraban, Ilhem Messaoudi, Daniel P Depledge, Werner J D Ouwendijk
The architecture of the simian varicella virus transcriptome. PLoS pathogens 17 (11) (2021)
Shirley E Braspenning, Robert Jan Lebbink, Daniel P Depledge, Claudia M E Schapendonk, Laura A Anderson, Georges G M G M Verjans, Tomohiko Sadaoka, Werner J D Ouwendijk
Mutagenesis of the Varicella-Zoster Virus Genome Demonstrates That VLT and VLT-ORF63 Proteins Are Dispensable for Lytic Infection. Viruses 13 (11) (2021)
Hui-Lan Hu, Kalanghad Puthankalam Srinivas, Shuoshuo Wang, Moses V Chao, Timothée Lionnet, Ian Mohr, Angus C Wilson, Daniel P Depledge, Tony T Huang
Single-cell transcriptomics identifies Gadd45b as a regulator of herpesvirus-reactivating neurons. EMBO reports (2021)
Shirley E Braspenning, Tomohiko Sadaoka, Judith Breuer, Georges G M G M Verjans, Werner J D Ouwendijk, Daniel P Depledge
Decoding the Architecture of the Varicella-Zoster Virus Transcriptome. mBio 11 (5) (2020)
Florent Lassalle, Mathew A Beale, Tehmina Bharucha, Charlotte A Williams, Rachel J Williams, Juliana Cudini, Richard Goldstein, Tanzina Haque, Daniel P Depledge, Judith Breuer
Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses. Virus evolution 6 (1) (2020)
Daniel P Depledge, Kalanghad Puthankalam Srinivas, Tomohiko Sadaoka, Devin Bready, Yasuko Mori, Dimitris G Placantonakis, Ian Mohr, Angus C Wilson
Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen. Nature communications 10 (1) (2019)
MiYao Hu, Daniel P Depledge, Esteban Flores Cortes, Judith Breuer, Luis M Schang
Chromatin dynamics and the transcriptional competence of HSV-1 genomes during lytic infections. PLoS pathogens 15 (11) (2019)
Kathleen Pheasant, Carla Sofia Möller-Levet, Juliet Jones, Daniel P Depledge, Judith Breuer, Gillian Elliott
Nuclear-cytoplasmic compartmentalization of the herpes simplex virus 1 infected cell transcriptome is co-ordinated by the viral endoribonuclease vhs and cofactors to facilitate the translation of late proteins. PLoS pathogens 14 (11) (2018)
Daniel P Depledge, Ian Mohr, Angus C Wilson
Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes. Journal of virology 93 (1) (2018)
Daniel P Depledge, Werner J D Ouwendijk, Tomohiko Sadaoka, Shirley E Braspenning, Yasuko Mori, Randall J Cohrs, Georges M G M Verjans, Judith Breuer
A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61. Nature communications 9 (1) (2018)

Daniel P Depledge.css-eqlu8i{font-size:small;padding-left:4px;} (Daniel Depledge)

Publication Activity (10 Years)

Top Topics

Top Venues

Daniel P Depledge (Daniel Depledge)