David J Duffy

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 21

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Communications biology

Animals : an open access journal from MDPI

Wellcome open research

University of Florida

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Florida

United States

Assistant Prof. :: Whitney Lab & Sea Turtle Hospital

University of Florida

United States

Courtesy Assistant Professor :: The Whitney Laboratory for Marine Bioscience and Sea Turtle Hospital

University of Limerick Sep 01 2018 - Aug 31 2019

Ireland

Lecturer in Genomics :: Department of Biological Sciences

Bangor University - Aug 31 2018

United Kingdom

MSCA Research Fellow :: Molecular Ecology and Fisheries Genetics Laboratory, School of Biological Sciences

University of Florida

United States

Post-doctoral Associate :: Whitney Laboratory for Marine Bioscience

University College Dublin

Ireland

UCD Post-doctoral Research Fellow - Level 2 :: Systems Biology Ireland

Publications

Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Liam Whitmore, Mark McCauley, Jessica A Farrell, Maximilian R Stammnitz, Samantha A Koda, Narges Mashkour, Victoria Summers, Todd Osborne, Jenny Whilde, David J Duffy
Inadvertent human genomic bycatch and intentional capture raise beneficial applications and ethical concerns with environmental DNA. Nature ecology & evolution (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Costanza Manes, Richard M Herren, Annie Page, Faith D Dunlap, Christopher A Skibicki, Devon R Rollinson Ramia, Jessica A Farrell, Ilaria Capua, Raymond R Carthy, David J Duffy
Green Turtle Fibropapillomatosis: Tumor Morphology and Growth Rate in a Rehabilitation Setting. Veterinary sciences 10 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Jessica A Farrell, Liam Whitmore, Narges Mashkour, Devon R Rollinson Ramia, Rachel S Thomas, Catherine B Eastman, Brooke Burkhalter, Kelsey Yetsko, Cody Mott, Larry Wood, Bette Zirkelbach, Lucas Meers, Pat Kleinsasser, Sharon Stock, Elizabeth Libert, Richard Herren, Scott Eastman, Whitney Crowder, Caitlin Bovery, David Anderson, David Godfrey, Nancy Condron, David J Duffy
Detection and population genomics of sea turtle species via noninvasive environmental DNA analysis of nesting beach sand tracks and oceanic water. Molecular ecology resources 22 (7) (2022)
David Romano, Lucía García-Gutiérrez, Nourhan K Aboud, David J Duffy, Keith T Flaherty, Dennie T Frederick, Walter Kolch, David Matallanas
Proteasomal down-regulation of the proapoptotic MST2 pathway contributes to BRAF inhibitor resistance in melanoma. Life science alliance 5 (10) (2022)
Annie Page, Liam Whitmore, Brian A Stacy, Justin R Perrault, Jessica A Farrell, Donna J Shaver, Jennifer Shelby Walker, Hilary R Frandsen, Elina Rantonen, Craig A Harms, Terry M Norton, Charles J Innis, Kelsey Yetsko, David J Duffy
Fibropapillomatosis and Chelonid Alphaherpesvirus 5 Infection in Kemp's Ridley Sea Turtles (Lepidochelys kempii). Animals : an open access journal from MDPI 11 (11) (2021)
David J Duffy, Brooke Burkhalter
When is a lab animal not a lab animal? Lab animal 49 (4) (2021)
Liam Whitmore, Kelsey Yetsko, Jessica A Farrell, Annie Page, Whitney Daniel, Donna J Shaver, Hilary R Frandsen, Jennifer Shelby Walker, Whitney Crowder, Caitlin Bovery, Devon Rollinson Ramia, Brooke Burkhalter, Elizabeth J Ryan, David J Duffy
Evolutionary Comparisons of Chelonid Alphaherpesvirus 5 (ChHV5) Genomes from Fibropapillomatosis-Afflicted Green (Chelonia mydas), Olive Ridley (Lepidochelys olivacea) and Kemp's Ridley (Lepidochelys kempii) Sea Turtles. Animals : an open access journal from MDPI 11 (9) (2021)
Máire Ní Leathlobhair, Kelsey Yetsko, Jessica A Farrell, Carmelo Iaria, Gabriele Marino, David J Duffy, Elizabeth P Murchison
Genotype data not consistent with clonal transmission of sea turtle fibropapillomatosis or goldfish schwannoma. Wellcome open research 6 (2021)
Kelsey Yetsko, Jessica A Farrell, Nicholas B Blackburn, Liam Whitmore, Maximilian R Stammnitz, Jenny Whilde, Catherine B Eastman, Devon Rollinson Ramia, Rachel Thomas, Aleksandar Krstic, Paul Linser, Simon Creer, Gary Carvalho, Mariana A Devlin, Nina Nahvi, Ana Cristina Leandro, Thomas W deMaar, Brooke Burkhalter, Elizabeth P Murchison, Christine E Schnitzler, David J Duffy
Molecular characterization of a marine turtle tumor epizootic, profiling external, internal and postsurgical regrowth tumors. Communications biology 4 (1) (2021)
Jessica A Farrell, Kelsey Yetsko, Liam Whitmore, Jenny Whilde, Catherine B Eastman, Devon Rollinson Ramia, Rachel Thomas, Paul Linser, Simon Creer, Brooke Burkhalter, Christine E Schnitzler, David J Duffy
Environmental DNA monitoring of oncogenic viral shedding and genomic profiling of sea turtle fibropapillomatosis reveals unusual viral dynamics. Communications biology 4 (1) (2021)
David J Duffy, Mark Q Martindale
Perspectives on the expansion of human precision oncology and genomic approaches to sea turtle fibropapillomatosis. Communications biology 2 (2019)
David J Duffy, Christine Schnitzler, Lorraine Karpinski, Rachel Thomas, Jenny Whilde, Catherine Eastman, Calvin Yang, Aleksandar Krstic, Devon Rollinson, Bette Zirkelbach, Kelsey Yetsko, Brooke Burkhalter, Mark Q Martindale
Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Communications biology 1 (2018)
Conor Daly, Lisa Shine, Theresa Heffernan, Sudhakar Deeti, Alison L Reynolds, John J O'Connor, Eugène T Dillon, David J Duffy, Walter Kolch, Gerard Cagney, Breandán N Kennedy
A Brain-Derived Neurotrophic Factor Mimetic Is Sufficient to Restore Cone Photoreceptor Visual Function in an Inherited Blindness Model. Scientific reports 7 (1) (2017)
Jenny Whilde, Mark Q Martindale, David J Duffy
Precision wildlife medicine: applications of the human-centred precision medicine revolution to species conservation. Global change biology 23 (5) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

David J Duffy