H Bradley Shaffer (H B Shaffer)

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 30

Top Venues

The Journal of heredity

Proceedings of the National Academy of Sciences of the United States of America

Molecular ecology

Heredity

UCLA Life Sciences

This page only lists publications with an associated author ORCID identifier.

Affiliation History

UCLA Life Sciences Jan 10 2012

United States

Professor :: Ecology and Evolutionary Biology

Publications

Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh H Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney A Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of California Pipevine, Aristolochia californica Torr. The Journal of heredity 115 (5) (2024)
Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh H Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney A Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of California Pipevine, Aristolochia californica Torr. The Journal of heredity 115 (5) (2024)
Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh H Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney A Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of California Pipevine, Aristolochia californica Torr. The Journal of heredity 115 (5) (2024)
Isolde van Riemsdijk, Jan W Arntzen, G M Bucciarelli, E McCartney-Melstad, M Rafajlović, Peter A Scott, Erin Toffelmier, H Bradley Shaffer, Ben Wielstra
Two transects reveal remarkable variation in gene flow on opposite ends of a European toad hybrid zone. Heredity (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Natalia Gallego-García, Mario Vargas-Ramírez, H Bradley Shaffer
The importance of cryptic diversity in the conservation of wide-ranging species: The red-footed tortoise Chelonoidis carbonarius in Colombia. Molecular ecology (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Blair P Bentley, Tomás Carrasco-Valenzuela, Elisa Karen Silva Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan M D Wood, Kelsey Yetsko, Justin R Perrault, Kelly Stewart, Scott R Benson, Yaniv Levy, Erica V Todd, H Bradley Shaffer, Peter Scott, Brian T Henen, Robert W Murphy, David W Mohr, Alan F Scott, David J Duffy, Neil J Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H Dutton, Olivier Fedrigo, Eugene W Myers, Erich D Jarvis, Camila J Mazzoni, Lisa M Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Joscha Beninde, Erin Toffelmier, H Bradley Shaffer
A brief history of population genetic research in California and an evaluation of its utility for conservation decision-making. The Journal of heredity 113 (6) (2022)
Joscha Beninde, Erin M Toffelmier, Aarron Andreas, Celina Nishioka, Meryl Slay, Ashley Soto, Justin P Bueno, Germar Gonzalez, Hannah V Pham, Molly Posta, Jordan L Pace, H Bradley Shaffer
CaliPopGen: A genetic and life history database for the fauna and flora of California. Scientific data 9 (1) (2022)
Peggy L Fiedler, Bjorn Erickson, Michael Esgro, Mark Gold, Joshua M Hull, Jennifer M Norris, Beth Shapiro, Michael Westphal, Erin Toffelmier, H Bradley Shaffer
Seizing the moment: The opportunity and relevance of the California Conservation Genomics Project to state and federal conservation policy. The Journal of heredity 113 (6) (2022)
Erin Toffelmier, Joscha Beninde, H Bradley Shaffer
The phylogeny of California, and how it informs setting multispecies conservation priorities. The Journal of heredity 113 (6) (2022)
Giorgio Bernardi, Jason A Toy, Merly Escalona, Mohan P A Marimuthu, Ruta Sahasrabudhe, Oanh Nguyen, Samuel Sacco, Eric Beraut, Erin Toffelmier, Courtney Miller, H Bradley Shaffer
Reference Genome of the Black Surfperch, Embiotoca jacksoni (Embiotocidae, Perciformes), a California Kelp Forest Fish That Lacks a Pelagic Larval Stage. The Journal of heredity 113 (6) (2022)
Giacomo Bernardi, Melissa DeBiasse, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Courtney Miller, Erin Toffelmier, H Bradley Shaffer
Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems. The Journal of heredity 113 (6) (2022)
H Bradley Shaffer, Erin Toffelmier, Russ B Corbett-Detig, Merly Escalona, Bjorn Erickson, Peggy Fiedler, Mark Gold, Ryan J Harrigan, Scott Hodges, Tara K Luckau, Courtney Miller, Daniel R Oliveira, Kevin E Shaffer, Beth Shapiro, Victoria L Sork, Ian J Wang
Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project. The Journal of heredity 113 (6) (2022)
Jesse L Grismer, Merly Escalona, Courtney A Miller, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Erin Toffelmier, Ian J Wang, H Bradley Shaffer
Reference genome of the rubber boa, Charina bottae (Serpentes: Boidae). The Journal of heredity 113 (6) (2022)
Harris A Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L Allende, John M Archibald, Miklós Bálint, Katharine B Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L Blaxter, Jing Cai, Nicolette D Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K Childers, Jonathan A Coddington, Dalia A Conde, Montserrat Corominas, Keith A Crandall, Andrew J Crawford, Federica DiPalma, Richard Durbin, ThankGod E Ebenezer, Scott V Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A Gibbs, Marcus Thomas Pius Gilbert, Melissa M Goldstein, Jennifer Ann Marshall Graves, Henry T Greely, Igor V Grigoriev, Kevin J Hackett, Neil Hall, David Haussler, Kristofer M Helgen, Carolyn J Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D Jarvis, Warren E Johnson, Steven J M Jones, Elinor K Karlsson, Paul J Kersey, Jin-Hyoung Kim, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, James H Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A K Mazet, Camila J Mazzoni, Eugene W Myers, Rachel J O'Neill, Sadye Paez, Hyun Park, Gene E Robinson, Cristina Roquet, Oliver A Ryder, Jamal S M Sabir, H Bradley Shaffer, Timothy M Shank, Jacob S Sherkow, Pamela S Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L Wilson, Xun Xu, Huanming Yang, Anne D Yoder, Guo-Jie Zhang
The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Ioana G Anghel, Sarah J Jacobs, Merly Escalona, Mohan P A Marimuthu, Colin W Fairbairn, Eric Beraut, Oanh H Nguyen, Erin Toffelmier, H Bradley Shaffer, Felipe Zapata
Reference genome of the color polymorphic desert annual plant sandblossoms, Linanthus parryae. The Journal of heredity 113 (6) (2022)
Kathryn M Everson, Levi N Gray, Angela G Jones, Nicolette M Lawrence, Mary E Foley, Kelly L Sovacool, Justin D Kratovil, Scott Hotaling, Paul M Hime, Andrew Storfer, Gabriela Parra-Olea, Ruth Percino-Daniel, X Aguilar-Miguel, Eric M O'Neill, Luis Zambrano, H Bradley Shaffer, David W Weisrock
Geography is more important than life history in the recent diversification of the tiger salamander complex. Proceedings of the National Academy of Sciences of the United States of America 118 (17) (2021)
Gary M Bucciarelli, Maren Lechner, Audrey Fontes, Lee B Kats, Heather L Eisthen, H Bradley Shaffer
From Poison to Promise: The Evolution of Tetrodotoxin and Its Potential as a Therapeutic. Toxins 13 (8) (2021)
Robert C Thomson, Phillip Q Spinks, H Bradley Shaffer
A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins. Proceedings of the National Academy of Sciences of the United States of America 118 (7) (2021)
Peter A Scott, Linda J Allison, Kimberleigh J Field, Roy C Averill-Murray, H Bradley Shaffer
Response to Comment on "Individual heterozygosity predicts translocation success in threatened desert tortoises". Science (New York, N.Y.) 372 (6546) (2021)
Robert D Cooper, H Bradley Shaffer
Allele-specific expression and gene regulation help explain transgressive thermal tolerance in non-native hybrids of the endangered California tiger salamander (Ambystoma californiense). Molecular ecology 30 (4) (2021)
Gary M Bucciarelli, Morgan A Clark, Katy S Delaney, Seth P D Riley, H Bradley Shaffer, Robert N Fisher, Rodney L Honeycutt, Lee B Kats
Amphibian responses in the aftermath of extreme climate events. Scientific reports 10 (1) (2020)
E Griffin Nicholson, Stephanie Manzo, Zachary Devereux, Thomas Paul Morgan, Robert N Fisher, Christopher Brown, Rosi Dagit, Peter A Scott, H Bradley Shaffer
Historical museum collections and contemporary population studies implicate roads and introduced predatory bullfrogs in the decline of western pond turtles. PeerJ 8 (2020)
Evan McCartney-Melstad, Müge Gidiş, H Bradley Shaffer
An empirical pipeline for choosing the optimal clustering threshold in RADseq studies. Molecular ecology resources 19 (5) (2019)

H Bradley Shaffer.css-eqlu8i{font-size:small;padding-left:4px;} (H B Shaffer)

Publication Activity (10 Years)

Top Topics

Top Venues

H Bradley Shaffer (H B Shaffer)