Derek M Bickhart (Derek Bickhart)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 14

Top Topics

Dna Methylation

Antimicrobial Resistance

Microbial Community

Top Venues

GigaByte (Hong Kong, China)

Scientific reports

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Tyson Fuller, Derek M Bickhart, Lisa M Koch, Lisa Kissing Kucek, Shahjahan Ali, Hayley Mangelson, Maria J Monteros, Timothy Hernandez, Timothy P L Smith, Heathcliffe Riday, Michael L Sullivan
A reference assembly for the legume cover crop hairy vetch ( Vicia villosa ). GigaByte (Hong Kong, China) 2023 (2023)
Derek M Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H Medema, Itzhak Mizrahi, Pavel A Pevzner, Timothy P L Smith
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities. Nature biotechnology 40 (5) (2022)
Derek M Bickhart, Lisa M Koch, Timothy P L Smith, Heathcliffe Riday, Michael L Sullivan
Chromosome-scale assembly of the highly heterozygous genome of red clover ( Trifolium pratense L.), an allogamous forage crop species. GigaByte (Hong Kong, China) 2022 (2022)
Derek M Bickhart, Lisa M Koch, Timothy P L Smith, Heathcliffe Riday, Michael L Sullivan
Chromosome-scale assembly of the highly heterozygous genome of red clover ( Trifolium pratense L.), an allogamous forage crop species. GigaByte (Hong Kong, China) 2022 (2022)
Juliana Young, Joseph H Skarlupka, Madison S Cox, Rafael Tassinari Resende, Amelie Fischer, Kenneth F Kalscheur, Jennifer C McClure, John B Cole, Garret Suen, Derek M Bickhart
Validating the Use of Bovine Buccal Sampling as a Proxy for the Rumen Microbiota by Using a Time Course and Random Forest Classification Approach. Applied and environmental microbiology 86 (17) (2020)
Lingzhao Fang, Yang Zhou, Shuli Liu, Jicai Jiang, Derek M Bickhart, Daniel J Null, Bingjie Li, Steven G Schroeder, Benjamin D Rosen, John B Cole, Curtis P Van Tassell, Li Ma, George E Liu
Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits. Epigenetics 14 (3) (2019)
Wai Yee Low, Rick Tearle, Derek M Bickhart, Benjamin D Rosen, Sarah B Kingan, Thomas Swale, Françoise Thibaud-Nissen, Terence D Murphy, Rachel Young, Lucas Lefevre, David A Hume, Andrew Collins, Paolo Ajmone Marsan, Timothy P L Smith, John Lewis Williams
Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity. Nature communications 10 (1) (2019)
Wenli Li, Andrea Edwards, Christina Riehle, Madison S Cox, Sarah Raabis, Joseph H Skarlupka, Andrew J Steinberger, Jason G Walling, Derek M Bickhart, Garret Suen
Author Correction: Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow. Scientific reports 9 (1) (2019)
Lingzhao Fang, Yang Zhou, Shuli Liu, Jicai Jiang, Derek M Bickhart, Daniel J Null, Bingjie Li, Steven G Schroeder, Benjamin D Rosen, John B Cole, Curtis P Van Tassell, Li Ma, George E Liu
Integrating Signals from Sperm Methylome Analysis and Genome-Wide Association Study for a Better Understanding of Male Fertility in Cattle. Epigenomes 3 (2) (2019)
Derek M Bickhart, Mick Watson, Sergey Koren, Kevin Panke-Buisse, Laura M Cersosimo, Maximilian O Press, Curtis P Van Tassell, Jo Ann S Van Kessel, Bradd J Haley, Seon Woo Kim, Cheryl Heiner, Garret Suen, Kiranmayee Bakshy, Ivan Liachko, Shawn T Sullivan, Phillip R Myer, Jay Ghurye, Mihai Pop, Paul J Weimer, Adam M Phillippy, Timothy P L Smith
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation. Genome biology 20 (1) (2019)
Wenli Li, Andrea Edwards, Christina Riehle, Madison S Cox, Sarah Raabis, Joseph H Skarlupka, Andrew J Steinberger, Jason G Walling, Derek M Bickhart, Garret Suen
Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow. Scientific reports 9 (1) (2019)
Sergey Koren, Arang Rhie, Brian P Walenz, Alexander T Dilthey, Derek M Bickhart, Sarah B Kingan, Stefan Hiendleder, John Lewis Williams, Timothy P L Smith, Adam M Phillippy
De novo assembly of haplotype-resolved genomes with trio binning. Nature biotechnology (2018)
Derek M Bickhart, Benjamin D Rosen, Sergey Koren, Brian L Sayre, Alex R Hastie, Saki Chan, Joyce Lee, Ernest T Lam, Ivan Liachko, Shawn T Sullivan, Joshua N Burton, Heather Jay Huson, John C Nystrom, Christy M Kelley, Jana L Hutchison, Yang Zhou, Jiajie Sun, Alessandra Crisà, Federico Abel Ponce de León, John C Schwartz, John A Hammond, Geoffrey C Waldbieser, Steven G Schroeder, George E Liu, Maitreya J Dunham, Jay Shendure, Tad S Sonstegard, Adam M Phillippy, Curtis P Van Tassell, Timothy P L Smith
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome. Nature genetics 49 (4) (2017)
Yuri Tani Utsunomiya, Marco Milanesi, Adam Taiti Harth Utsunomiya, Rafaela Beatriz Pintor Torrecilha, Eui-Soo Kim, Márcio Silva Costa, Tamíris Sayuri Aguiar, Steven G Schroeder, Adriana Santana do Carmo, Roberto Carvalheiro, Haroldo Henrique Rezende Neves, Romulo Cláudio Morozini Padula, Thayla Souza Sussai, Ludmilla Balbo Zavarez, Rafael Silva Cipriano, Maria Margareth Theodoro Caminhas, George Hambrecht, Licia Colli, Elisa Eufemi, Paolo Ajmone-Marsan, Deneb Cesana, Marco Sannazaro, Maurizio Buora, Michele Morgante, George Liu, Derek M Bickhart, Curtis Paul Van Tassell, Johann Sölkner, Tad Stewart Sonstegard, José Fernando Garcia
A PLAG1 mutation contributed to stature recovery in modern cattle. Scientific reports 7 (1) (2017)