Joyce Lee

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 14

Top Venues

Cancers

Nature

Science (New York, N.Y.)

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Darren Finlay, Rabi Murad, Karl Hong, Joyce Lee, Andy Wing Chun Pang, Chi-Yu Lai, Benjamin Clifford, Carol Burian, James Mason, Alex R Hastie, Jun Yin, Kristiina Vuori
Detection of Genomic Structural Variations Associated with Drug Sensitivity and Resistance in Acute Leukemia. Cancers 16 (2) (2024)
Darren Finlay, Rabi Murad, Karl Hong, Joyce Lee, Andy Wing Chun Pang, Chi-Yu Lai, Benjamin Clifford, Carol Burian, James Mason, Alex R Hastie, Jun Yin, Kristiina Vuori
Detection of Genomic Structural Variations Associated with Drug Sensitivity and Resistance in Acute Leukemia. Cancers 16 (2) (2024)
Darren Finlay, Rabi Murad, Karl Hong, Joyce Lee, Andy Wing Chun Pang, Chi-Yu Lai, Benjamin Clifford, Carol Burian, James Mason, Alex R Hastie, Jun Yin, Kristiina Vuori
Detection of Genomic Structural Variations Associated with Drug Sensitivity and Resistance in Acute Leukemia. Cancers 16 (2) (2024)
Erich D Jarvis, Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M D Wood, Alan Tracey, Françoise Thibaud-Nissen, Mitchell R Vollger, David Porubsky, Haoyu Cheng, Mobin Asri, Glennis A Logsdon, Paolo Carnevali, Mark J P Chaisson, Chen-Shan Chin, Sarah Cody, Joanna Collins, Peter Ebert, Merly Escalona, Olivier Fedrigo, Robert S Fulton, Lucinda L Fulton, Shilpa Garg, Jennifer L Gerton, Jay Ghurye, Anastasiya Granat, Richard E Green, William Harvey, Patrick Hasenfeld, Alex Hastie, Marina Haukness, Erich B Jaeger, Miten Jain, Melanie Kirsche, Mikhail Kolmogorov, Jan O Korbel, Sergey Koren, Jonas Korlach, Joyce Lee, Daofeng Li, Tina Lindsay, Julian Lucas, Feng Luo, Tobias Marschall, Matthew W Mitchell, Jennifer McDaniel, Fan Nie, Hugh E Olsen, Nathan D Olson, Trevor Pesout, Tamara Potapova, Daniela Puiu, Allison Regier, Jue Ruan, Steven L Salzberg, Ashley D Sanders, Michael C Schatz, Anthony Schmitt, Valerie A Schneider, Siddarth Selvaraj, Kishwar Shafin, Alaina Shumate, Nathan O Stitziel, Catherine Stober, James Torrance, Justin Wagner, Jian-Xin Wang, Aaron Wenger, Chuan-Le Xiao, Aleksey V Zimin, Guo-Jie Zhang, Ting Wang, Heng Li, Erik Garrison, David Haussler, Ira Hall, Justin M Zook, Evan E Eichler, Adam M Phillippy, Benedict Paten, Kerstin Howe, Karen H Miga, null null
Semi-automated assembly of high-quality diploid human reference genomes. Nature 611 (7936) (2022)
Sergey Aganezov, Stephanie M Yan, Daniela C Soto, Melanie Kirsche, Samantha Zarate, Pavel Avdeyev, Dylan J Taylor, Kishwar Shafin, Alaina Shumate, Chunlin Xiao, Justin Wagner, Jennifer McDaniel, Nathan D Olson, Michael E G Sauria, Mitchell R Vollger, Arang Rhie, Melissa Meredith, Skylar Martin, Joyce Lee, Sergey Koren, Jeffrey A Rosenfeld, Benedict Paten, Ryan Layer, Chen-Shan Chin, Fritz J Sedlazeck, Nancy F Hansen, Danny E Miller, Adam M Phillippy, Karen H Miga, Rajiv C McCoy, Megan Y Dennis, Justin M Zook, Michael C Schatz
A complete reference genome improves analysis of human genetic variation. Science (New York, N.Y.) 376 (6588) (2022)
Justin Wagner, Nathan D Olson, Lindsay Harris, Jennifer McDaniel, Haoyu Cheng, Arkarachai Fungtammasan, Yih-Chii Hwang, Richa Gupta, Aaron M Wenger, William J Rowell, Ziad M Khan, Jesse Farek, Yiming Zhu, Aishwarya Pisupati, Medhat Mahmoud, Chunlin Xiao, Byunggil Yoo, Sayed Mohammad Ebrahim Sahraeian, Danny E Miller, David Jáspez, Jose Miguel Lorenzo-Salazar, Adrián Muñoz-Barrera, Luis Alberto Rubio-Rodríguez, Carlos Flores, Giuseppe Narzisi, Uday Shanker Evani, Wayne E Clarke, Joyce Lee, Christopher E Mason, Stephen E Lincoln, Karen H Miga, Mark T W Ebbert, Alaina Shumate, Heng Li, Chen-Shan Chin, Justin M Zook, Fritz J Sedlazeck
Curated variation benchmarks for challenging medically relevant autosomal genes. Nature biotechnology 40 (5) (2022)
Peter Ebert, Peter A Audano, Qihui Zhu, Bernardo Rodriguez-Martin, David Porubsky, Marc Jan Bonder, Arvis Sulovari, Jana Ebler, Weichen Zhou, Rebecca Serra Mari, Feyza Yilmaz, Xuefang Zhao, PingHsun Hsieh, Joyce Lee, Sushant Kumar, Jiadong Lin, Tobias Rausch, Yu Chen, Jingwen Ren, Martin Santamarina, Wolfram Höps, Hufsah Ashraf, Nelson T Chuang, Xiaofei Yang, Katherine M Munson, Alexandra P Lewis, Susan Fairley, Luke J Tallon, Wayne E Clarke, Anna O Basile, Marta Byrska-Bishop, André Corvelo, Uday S Evani, Tsung-Yu Lu, Mark J P Chaisson, Junjie Chen, Chong Li, Harrison Brand, Aaron M Wenger, Maryam Ghareghani, William T Harvey, Benjamin Raeder, Patrick Hasenfeld, Allison A Regier, Haley J Abel, Ira M Hall, Paul Flicek, Oliver Stegle, Mark B Gerstein, Jose M C Tubio, Zepeng Mu, Yang I Li, Xinghua Shi, Alex R Hastie, Kai Ye, Zechen Chong, Ashley D Sanders, Michael C Zody, Michael E Talkowski, Ryan E Mills, Scott E Devine, Charles Lee, Jan O Korbel, Tobias Marschall, Evan E Eichler
Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.) 372 (6537) (2021)
Arang Rhie, Shane A McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L Gedman, Lindsey J Cantin, Françoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C Vernes, Tanya M Lama, Frank Grützner, Wesley C Warren, Christopher N Balakrishnan, David W Burt, Julia M George, Matthew T Biegler, David Iorns, Andrew Digby, Daryl Eason, Bruce C Robertson, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F Kautt, Paolo Franchini, Harry William Detrich, Hannes Svardal, Maximilian Wagner, Gavin J P Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B Kingan, Richard J Hall, Zev Kronenberg, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E Green, Nicholas H Putnam, Ivo Glynne Gut, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Robel E Dagnew, Dengfeng Guan, Sarah E London, David F Clayton, Claudio V Mello, Samantha R Friedrich, Peter V Lovell, Ekaterina Osipova, Farooq O Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Michael Hiller, Yang Zhou, Robert S Harris, Kateryna D Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal J Martin, Kevin Howe, Paul Flicek, Brian P Walenz, Woori Kwak, Hiram Clawson, Mark E Diekhans, Luis Nassar, Benedict Paten, Robert H S Kraus, Andrew J Crawford, Marcus Thomas Pius Gilbert, Guo-Jie Zhang, Byrappa Venkatesh, Robert W Murphy, Klaus-Peter Koepfli, Joshua D Kapp, Warren E Johnson, Federica Di Palma, Tomas Marques-Bonet, Emma C Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A Ryder, David Haussler, Stephen J O'Brien, Jonas Korlach, Harris A Lewin, Kerstin Howe, Eugene W Myers, Richard Durbin, Adam M Phillippy, Erich D Jarvis
Towards complete and error-free genome assemblies of all vertebrate species. Nature 592 (7856) (2021)
Yafei Mao, Claudia Rita Catacchio, LaDeana W Hillier, David Porubsky, Ruiyang Li, Arvis Sulovari, Jason D Fernandes, Francesco Montinaro, David S Gordon, Jessica M Storer, Marina Haukness, Ian T Fiddes, Shwetha Canchi Murali, Philip C Dishuck, PingHsun Hsieh, William T Harvey, Peter A Audano, Ludovica Mercuri, Ilaria Piccolo, Francesca Antonacci, Katherine M Munson, Alexandra P Lewis, Carl Baker, Jason G Underwood, Kendra Hoekzema, Tzu-Hsueh Huang, Melanie Sorensen, Jerilyn A Walker, Jinna Hoffman, Françoise Thibaud-Nissen, Sofie R Salama, Andy Wing Chun Pang, Joyce Lee, Alex R Hastie, Benedict Paten, Mark A Batzer, Mark E Diekhans, Mario Ventura, Evan E Eichler
A high-quality bonobo genome refines the analysis of hominid evolution. Nature 594 (7861) (2021)
Wai Yee Low, Rick Tearle, Ruijie Liu, Sergey Koren, Arang Rhie, Derek M Bickhart, Benjamin D Rosen, Zev N Kronenberg, Sarah B Kingan, Elizabeth Tseng, Françoise Thibaud-Nissen, Fergal J Martin, Konstantinos Billis, Jay Ghurye, Alex R Hastie, Joyce Lee, Andy Wing Chun Pang, Michael P Heaton, Adam M Phillippy, Stefan Hiendleder, Timothy P L Smith, John Lewis Williams
Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle. Nature communications 11 (1) (2020)
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, May Christine V Malicdan, Chunlin Xiao, Stephen Sherry, Sergey Koren, Adam M Phillippy, Paul C Boutros, Sayed Mohammad E Sahraeian, Vincent Huang, Alexandre Rouette, Noah Alexander, Christopher E Mason, Iman Hajirasouliha, Camir Ricketts, Joyce Lee, Rick Tearle, Ian T Fiddes, Alvaro Martinez Barrio, Jeremiah Wala, Andrew Carroll, Noushin Ghaffari, Oscar L Rodriguez, Ali Bashir, Shaun Jackman, John J Farrell, Aaron M Wenger, Can Alkan, Arda Söylev, Michael C Schatz, Shilpa Garg, George M Church, Tobias Marschall, Ken Chen, Xian Fan, Adam C English, Jeffrey A Rosenfeld, Weichen Zhou, Ryan E Mills, Jay M Sage, Jennifer R Davis, Michael D Kaiser, John S Oliver, Anthony P Catalano, Mark J P Chaisson, Noah Spies, Fritz J Sedlazeck, Marc Salit
A robust benchmark for detection of germline large deletions and insertions. Nature biotechnology 38 (11) (2020)
Mark J P Chaisson, Ashley D Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J Gardner, Oscar L Rodriguez, Li Guo, Ryan L Collins, Xian Fan, Jia Wen, Robert E Handsaker, Susan Fairley, Zev N Kronenberg, Xiangmeng Kong, Fereydoun Hormozdiari, Dillon Lee, Aaron M Wenger, Alex R Hastie, Danny Antaki, Thomas Anantharaman, Peter A Audano, Harrison Brand, Stuart Cantsilieris, Han Cao, Eliza Cerveira, Chong Chen, Xintong Chen, Chen-Shan Chin, Zechen Chong, Nelson T Chuang, Christine C Lambert, Deanna M Church, Laura Clarke, Andrew Farrell, Joey Flores, Timur Galeev, David U Gorkin, Madhusudan Gujral, Victor Guryev, William Haynes Heaton, Jonas Korlach, Sushant Kumar, Jee Young Kwon, Ernest T Lam, Jong Eun Lee, Joyce Lee, Wan-Ping Lee, Sau Peng Lee, Shantao Li, Patrick Marks, Karine Viaud-Martinez, Sascha Meiers, Katherine M Munson, Fábio C P Navarro, Bradley J Nelson, Conor Nodzak, Amina Noor, Sofia Kyriazopoulou-Panagiotopoulou, Andy W C Pang, Yunjiang Qiu, Gabriel Rosanio, Mallory Ryan, Adrian Stütz, Diana C J Spierings, Alistair Ward, AnneMarie E Welch, Ming Xiao, Wei Xu, Chengsheng Zhang, Qihui Zhu, Xiangqun Zheng-Bradley, Ernesto Lowy-Gallego, Sergei Yakneen, Steven McCarroll, Goo Jun, Li Ding, Chong Lek Koh, Bing Ren, Paul Flicek, Ken Chen, Mark B Gerstein, Pui-Yan Kwok, Peter M Lansdorp, Gabor T Marth, Jonathan Sebat, Xing-Hua Shi, Ali Bashir, Kai Ye, Scott E Devine, Michael E Talkowski, Ryan E Mills, Tobias Marschall, Jan O Korbel, Evan E Eichler, Charles Lee
Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nature communications 10 (1) (2019)
Zev N Kronenberg, Ian T Fiddes, David Gordon, Shwetha Murali, Stuart Cantsilieris, Olivia S Meyerson, Jason G Underwood, Bradley J Nelson, Mark J P Chaisson, Max L Dougherty, Katherine M Munson, Alex R Hastie, Mark E Diekhans, Fereydoun Hormozdiari, Nicola Lorusso, Kendra Hoekzema, Ruolan Qiu, Karen Clark, Archana Raja, AnneMarie E Welch, Melanie Sorensen, Carl Baker, Robert S Fulton, Joel Armstrong, Tina A Graves-Lindsay, Ahmet M Denli, Emma R Hoppe, PingHsun Hsieh, Christopher M Hill, Andy Wing Chun Pang, Joyce Lee, Ernest T Lam, Susan K Dutcher, Fred H Gage, Wesley C Warren, Jay Shendure, David Haussler, Valerie A Schneider, Han Cao, Mario Ventura, Richard K Wilson, Benedict Paten, Alex Aaron Pollen, Evan E Eichler
High-resolution comparative analysis of great ape genomes. Science (New York, N.Y.) 360 (6393) (2018)
Derek M Bickhart, Benjamin D Rosen, Sergey Koren, Brian L Sayre, Alex R Hastie, Saki Chan, Joyce Lee, Ernest T Lam, Ivan Liachko, Shawn T Sullivan, Joshua N Burton, Heather Jay Huson, John C Nystrom, Christy M Kelley, Jana L Hutchison, Yang Zhou, Jiajie Sun, Alessandra Crisà, Federico Abel Ponce de León, John C Schwartz, John A Hammond, Geoffrey C Waldbieser, Steven G Schroeder, George E Liu, Maitreya J Dunham, Jay Shendure, Tad S Sonstegard, Adam M Phillippy, Curtis P Van Tassell, Timothy P L Smith
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome. Nature genetics 49 (4) (2017)

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Publication Activity (10 Years)

Top Topics

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Joyce Lee