Devin K Schweppe (Devin Schweppe)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 33

Top Topics

Mass Spectrometry

Network Analysis

Acinetobacter Baumannii

Top Venues

bioRxiv : the preprint server for biology

Journal of proteome research

Nature communications

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Timothy M Locke, Rose Fields, Hayden Gizinski, George M Otto, David M Shechner, Matthew D Berg, Judit Villen, Yasemin Sancak, Devin K Schweppe
High-Throughput Identification of Calcium Regulated Proteins Across Diverse Proteomes. bioRxiv : the preprint server for biology (2024)
Yuzhen Liu, Christopher D McGann, Mary Krebs, Thomas A Perkins, Rose Fields, Conor K Camplisson, David Z Nwizugbo, Chris Hsu, Shayan C Avanessian, Ashley F Tsue, Evan E Kania, David Michael Shechner, Brian J Beliveau, Devin K Schweppe
DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci. bioRxiv : the preprint server for biology (2024)
Yuzhen Liu, Christopher D McGann, Mary Krebs, Thomas A Perkins, Rose Fields, Conor K Camplisson, David Z Nwizugbo, Chris Hsu, Shayan C Avanessian, Ashley F Tsue, Evan E Kania, David Michael Shechner, Brian J Beliveau, Devin K Schweppe
DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci. bioRxiv : the preprint server for biology (2024)
Timothy M Locke, Rose Fields, Hayden Gizinski, George M Otto, David M Shechner, Matthew D Berg, Judit Villen, Yasemin Sancak, Devin K Schweppe
High-Throughput Identification of Calcium Regulated Proteins Across Diverse Proteomes. bioRxiv : the preprint server for biology (2024)
Timothy M Locke, Rose Fields, Hayden Gizinski, George M Otto, David M Shechner, Matthew D Berg, Judit Villen, Yasemin Sancak, Devin K Schweppe
High-Throughput Identification of Calcium Regulated Proteins Across Diverse Proteomes. bioRxiv : the preprint server for biology (2024)
Jonathan G Van Vranken, Jiaming Li, Julian Mintseris, Meagan Gadzuk-Shea, Steven P Gygi, Devin K Schweppe
Large-scale characterization of drug mechanism of action using proteome-wide thermal shift assays. bioRxiv : the preprint server for biology (2024)
Riddhiman K Garge, Valerie Lynch, Rose Fields, Silvia Casadei, Sabrina Best, Jeremy Stone, Matthew Snyder, Chris D McGann, Jay Shendure, Joshua T Schiffer, Nobuhiko Hamazaki, Devin K Schweppe
The proteomic landscape and temporal dynamics of mammalian gastruloid development. bioRxiv : the preprint server for biology (2024)
Jonathan G Van Vranken, Jiaming Li, Julian Mintseris, Meagan Gadzuk-Shea, Steven P Gygi, Devin K Schweppe
Large-scale characterization of drug mechanism of action using proteome-wide thermal shift assays. bioRxiv : the preprint server for biology (2024)
Jonathan G Van Vranken, Jiaming Li, Julian Mintseris, Meagan Gadzuk-Shea, Steven P Gygi, Devin K Schweppe
Large-scale characterization of drug mechanism of action using proteome-wide thermal shift assays. bioRxiv : the preprint server for biology (2024)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Chris D McGann, William D Barshop, Jesse D Canterbury, Chuwei Lin, Wassim Gabriel, Jingjing Huang, David Bergen, Vlad Zabrouskov, Rafael D Melani, Mathias Wilhelm, Graeme C McAlister, Devin K Schweppe
Real-Time Spectral Library Matching for Sample Multiplexed Quantitative Proteomics. Journal of proteome research (2023)
Dylan C Mitchell, Miljan Kuljanin, Jiaming Li, Jonathan G Van Vranken, Nathan Bulloch, Devin K Schweppe, Edward L Huttlin, Steven P Gygi
A proteome-wide atlas of drug mechanism of action. Nature biotechnology (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Ashley F Tsue, Evan E Kania, Diana Q Lei, Rose Fields, Christopher D McGann, Elliot Hershberg, Xinxian Deng, Maryanne Kihiu, Shao-En Ong, Christine M Disteche, Sita Kugel, Brian J Beliveau, Devin K Schweppe, David Michael Shechner
Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ . bioRxiv : the preprint server for biology (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Jonathon J O'Brien, Meagan Gadzuk-Shea, Phillip M Seitzer, Ramin Rad, Fiona E McAllister, Devin K Schweppe
Conditional Fragment Ion Probabilities Improve Database Searching for Nonmonoisotopic Precursors. Journal of proteome research (2022)
Miljan Kuljanin, Dylan C Mitchell, Devin K Schweppe, Ajami S Gikandi, David P Nusinow, Nathan J Bulloch, Ekaterina V Vinogradova, David L Wilson, Eric T Kool, Joseph D Mancias, Benjamin F Cravatt, Steven P Gygi
Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nature biotechnology 39 (5) (2021)
Joao A Paulo, Devin K Schweppe
Advances in quantitative high-throughput phosphoproteomics with sample multiplexing. Proteomics 21 (9) (2021)
Ramin Rad, Jiaming Li, Julian Mintseris, Jeremy D O'Connell, Steven P Gygi, Devin K Schweppe
Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage. Journal of proteome research 20 (1) (2020)
Qing Yu, Joao A Paulo, Jose Navarrete-Perea, Graeme C McAlister, Jesse D Canterbury, Derek J Bailey, Aaron M Robitaille, Romain Huguet, Vlad Zabrouskov, Steven P Gygi, Devin K Schweppe
Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed Proteomics. Analytical chemistry 92 (9) (2020)
Devin K Schweppe, Satendra Prasad, Michael W Belford, Jose Navarrete-Perea, Derek J Bailey, Romain Huguet, Mark P Jedrychowski, Ramin Rad, Graeme McAlister, Susan E Abbatiello, Eloy R Wouters, Vlad Zabrouskov, Jean-Jacques Dunyach, João A Paulo, Steven P Gygi
Correction to Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry. Analytical chemistry 92 (6) (2020)
Devin K Schweppe, Jimmy K Eng, Qing Yu, Derek Bailey, Ramin Rad, Jose Navarrete-Perea, Edward L Huttlin, Brian K Erickson, Joao A Paulo, Steven P Gygi
Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics. Journal of proteome research 19 (5) (2020)
Brian K Erickson, Devin K Schweppe, Qing Yu, Ramin Rad, Wilhem Haas, Graeme C McAlister, Steven P Gygi
Parallel Notched Gas-Phase Enrichment for Improved Proteome Identification and Quantification with Fast Spectral Acquisition Rates. Journal of proteome research 19 (7) (2020)
Devin K Schweppe, Scott F Rusin, Steven P Gygi, Joao A Paulo
Optimized Workflow for Multiplexed Phosphorylation Analysis of TMT-Labeled Peptides Using High-Field Asymmetric Waveform Ion Mobility Spectrometry. Journal of proteome research 19 (1) (2019)
Brian K Erickson, Julian Mintseris, Devin K Schweppe, Jose Navarrete-Perea, Alison R Erickson, David P Nusinow, Joao A Paulo, Steven P Gygi
Active Instrument Engagement Combined with a Real-Time Database Search for Improved Performance of Sample Multiplexing Workflows. Journal of proteome research 18 (3) (2019)
Devin K Schweppe, Satendra Prasad, Michael W Belford, Jose Navarrete-Perea, Derek J Bailey, Romain Huguet, Mark P Jedrychowski, Ramin Rad, Graeme McAlister, Susan E Abbatiello, Eloy R Woulters, Vlad Zabrouskov, Jean-Jacques Dunyach, João A Paulo, Steven P Gygi
Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry. Analytical chemistry 91 (6) (2019)
Xuefei Zhong, Xia Wu, Devin K Schweppe, Juan D Chavez, Martin Mathay, Jimmy K Eng, Andrew Keller, James E Bruce
In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes. Journal of the American Society for Mass Spectrometry 31 (2) (2019)
Christopher M Rose, Brian K Erickson, Devin K Schweppe, Rosa Viner, Jae Choi, John Rogers, Ryan Bomgarden, Steven P Gygi, Donald S Kirkpatrick
TomahaqCompanion: A Tool for the Creation and Analysis of Isobaric Label Based Multiplexed Targeted Assays. Journal of proteome research 18 (2) (2018)
Devin K Schweppe, Edward L Huttlin, J Wade Harper, Steven P Gygi
BioPlex Display: An Interactive Suite for Large-Scale AP-MS Protein-Protein Interaction Data. Journal of proteome research 17 (1) (2017)
Xia Wu, Juan D Chavez, Devin K Schweppe, Chunxiang Zheng, Chad R Weisbrod, Jimmy K Eng, Ananya Murali, Samuel A Lee, Elizabeth Ramage, Larry A Gallagher, Hemantha D Kulasekara, Mauna E Edrozo, Cassandra N Kamischke, Mitchell J Brittnacher, Samuel I Miller, Pradeep K Singh, Colin Manoil, James E Bruce
In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075. Nature communications 7 (2016)