James E Bruce

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 45

Top Topics

Mass Spectrometry

Breast Cancer Cells

Ultra High Performance Liquid Chromatography

Top Venues

Journal of proteome research

Nature structural & molecular biology

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Sung-Gun Park, Andrew Keller, Nathan K Kaiser, James E Bruce
Interactome dynamics during heat stress signal transmission and reception. bioRxiv : the preprint server for biology (2024)
Jared P Mohr, Arianne Caudal, Rong Tian, James E Bruce
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies. Journal of proteome research 23 (1) (2023)
Jared P Mohr, Arianne Caudal, Rong Tian, James E Bruce
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies. Journal of proteome research 23 (1) (2023)
Anna A Bakhtina, Gavin A Pharaoh, Matthew D Campbell, Andrew Keller, Rudolph S Stuppard, David J Marcinek, James E Bruce
Skeletal muscle mitochondrial interactome remodeling is linked to functional decline in aged female mice. Nature aging 3 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Jared P Mohr, Arianne Caudal, Rong Tian, James E Bruce
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies. Journal of proteome research 23 (1) (2023)
Anna A Bakhtina, Gavin A Pharaoh, Matthew D Campbell, Andrew Keller, Rudolph S Stuppard, David J Marcinek, James E Bruce
Skeletal muscle mitochondrial interactome remodeling is linked to functional decline in aged female mice. Nature aging 3 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Anna A Bakhtina, Gavin A Pharaoh, Matthew D Campbell, Andrew Keller, Rudolph S Stuppard, David J Marcinek, James E Bruce
Skeletal muscle mitochondrial interactome remodeling is linked to functional decline in aged female mice. Nature aging 3 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology (2023)
Jared P Mohr, Arianne Caudal, Rong Tian, James E Bruce
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies. Journal of proteome research 23 (1) (2023)
Martin Mathay, Andrew Keller, James E Bruce
Studying Protein-Ligand Interactions by Protein Denaturation and Quantitative Cross-Linking Mass Spectrometry. Analytical chemistry (2023)
Jared P Mohr, Arianne Caudal, Rong Tian, James E Bruce
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies. Journal of proteome research (2023)
Anna A Bakhtina, Gavin A Pharaoh, Matthew D Campbell, Andrew Keller, Rudolph S Stuppard, David J Marcinek, James E Bruce
Skeletal muscle mitochondrial interactome remodeling is linked to functional decline in aged female mice. Nature aging 3 (3) (2023)
Anna A Bakhtina, Gavin A Pharaoh, Matthew D Campbell, Andrew Keller, Rudolph S Stuppard, David J Marcinek, James E Bruce
Skeletal muscle mitochondrial interactome remodeling is linked to functional decline in aged female mice. Nature aging 3 (3) (2023)
Jared P Mohr, Arianne Caudal, Rong Tian, James E Bruce
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies. Journal of proteome research 23 (1) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Anna A Bakhtina, Gavin A Pharaoh, Matthew D Campbell, Andrew Keller, Rudolph S Stuppard, David J Marcinek, James E Bruce
Skeletal muscle mitochondrial interactome remodeling is linked to functional decline in aged female mice. Nature aging 3 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Andrew Keller, Xiaoting Tang, James E Bruce
Integrated Analysis of Cross-Links and Dead-End Peptides for Enhanced Interpretation of Quantitative XL-MS. Journal of proteome research (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Helisa H Wippel, Juan D Chavez, Andrew D Keller, James E Bruce
Multiplexed Isobaric Quantitative Cross-Linking Reveals Drug-Induced Interactome Changes in Breast Cancer Cells. Analytical chemistry 94 (6) (2022)
Helisa H Wippel, Mariana Fioramonte, Juan D Chavez, James E Bruce
Deciphering the architecture and interactome of hnRNP proteins and enigmRBPs. Molecular omics 17 (4) (2022)
Andrew Keller, Anna A Bakhtina, Juan D Chavez, James E Bruce
Improved Interpretation of Protein Conformational Differences and Ligand Occupancy in Large-Scale Cross-Link Data. Journal of proteome research 21 (6) (2022)
Juan D Chavez, Helisa H Wippel, Xiaoting Tang, Andrew Keller, James E Bruce
In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology. Chemical reviews (2021)
Juan D Chavez, Andrew Keller, Helisa H Wippel, Jared P Mohr, James E Bruce
Multiplexed Cross-Linking with Isobaric Quantitative Protein Interaction Reporter Technology. Analytical chemistry (2021)
Xiaoting Tang, Helisa H Wippel, Juan D Chavez, James E Bruce
Crosslinking mass spectrometry: A link between structural biology and systems biology. Protein science : a publication of the Protein Society 30 (4) (2021)
Sung-Gun Park, Gordon A Anderson, James E Bruce
Parallel Detection of Fundamental and Sixth Harmonic Signals Using an ICR Cell with Dipole and Sixth Harmonic Detectors. Journal of the American Society for Mass Spectrometry 31 (3) (2020)
Juan D Chavez, Xiaoting Tang, Matthew D Campbell, Gustavo Reyes, Philip A Kramer, Rudy Stuppard, Andrew Keller, Huiliang Zhang, Peter S Rabinovitch, David J Marcinek, James E Bruce
Mitochondrial protein interaction landscape of SS-31. Proceedings of the National Academy of Sciences of the United States of America 117 (26) (2020)
John S Ramsey, Elizabeth L Chin, Juan D Chavez, Surya Saha, Darya Mischuk, Jaclyn Mahoney, Jared Mohr, Faith M Robison, Elizabeth Mitrovic, Yimin Xu, Susan R Strickler, Noe Fernandez, Xuefei Zhong, MaryLou Polek, Kris E Godfrey, James J Giovannoni, Lukas A Mueller, Carolyn M Slupsky, James E Bruce, Michelle L Heck
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of Citrus limon Response to Graft Inoculation by Candidatus Liberibacter asiaticus. Journal of proteome research 19 (6) (2020)
Andrew Keller, Juan D Chavez, Xiaoting Tang, James E Bruce
Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data. Journal of proteome research 20 (1) (2020)
Elizabeth L Chin, John S Ramsey, Darya O Mishchuk, Surya Saha, Elizabeth Foster, Juan D Chavez, Kevin Howe, Xuefei Zhong, MaryLou Polek, Kris E Godfrey, Lukas A Mueller, James E Bruce, Michelle Heck, Carolyn M Slupsky
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with "Candidatus Liberibacter asiaticus". Journal of proteome research 19 (2) (2020)
Juan D Chavez, Andrew Keller, Jared P Mohr, James E Bruce
Isobaric Quantitative Protein Interaction Reporter Technology for Comparative Interactome Studies. Analytical chemistry 92 (20) (2020)
Xia Wu, Richard J Siehnel, Jayanthi Garudathri, Benjamin J Staudinger, Katherine B Hisert, Egon A Ozer, Alan R Hauser, Jimmy K Eng, Colin Manoil, Pradeep K Singh, James E Bruce
In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients. Journal of proteome research 18 (6) (2019)
Juan D Chavez, Jared P Mohr, Martin Mathay, Xuefei Zhong, Andrew Keller, James E Bruce
Systems structural biology measurements by in vivo cross-linking with mass spectrometry. Nature protocols 14 (8) (2019)
Xuefei Zhong, Xia Wu, Devin K Schweppe, Juan D Chavez, Martin Mathay, Jimmy K Eng, Andrew Keller, James E Bruce
In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes. Journal of the American Society for Mass Spectrometry 31 (2) (2019)
Andrew Keller, Juan D Chavez, Kevin C Felt, James E Bruce
Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies. Journal of proteome research 18 (8) (2019)
Claudio Iacobucci, Christine Piotrowski, Ruedi Aebersold, Bruno C Amaral, Philip Andrews, Katja Bernfur, Christoph H Borchers, Nicolas I Brodie, James E Bruce, Yong Cao, Stéphane Chaignepain, Juan D Chavez, Stéphane Claverol, Juergen Cox, Trisha Davis, Gianluca Degliesposti, Meng-Qiu Dong, Nufar Edinger, Cecilia Emanuelsson, Marina Gay, Michael Götze, Francisco Gomes-Neto, Fabio César Gozzo, Craig Gutierrez, Caroline Haupt, Albert J R Heck, Franz Herzog, Lan Huang, Michael R Hoopmann, Nir Kalisman, Oleg Klykov, Zdeněk Kukačka, Fan Liu, Michael J MacCoss, Karl Mechtler, Ravit Mesika, Robert L Moritz, Nagarjuna Nagaraj, Victor Nesati, Ana G C Neves-Ferreira, Robert Ninnis, Petr Novák, Francis J O'Reilly, Matthias Pelzing, Evgeniy Petrotchenko, Lolita Piersimoni, Manolo Plasencia, Tara Louise Pukala, Kasper Dyrberg Rand, Juri Rappsilber, Dana Reichmann, Carolin Sailer, Chris P Sarnowski, Richard A Scheltema, Carla Schmidt, David C Schriemer, Yi Shi, J Mark Skehel, Moriya Slavin, Frank Sobott, Victor Solis-Mezarino, Heike Stephanowitz, Florian Stengel, Christian E Stieger, Esben Trabjerg, Michael Trnka, Marta Vilaseca, Rosa Viner, Yufei Xiang, Sule Yilmaz, Alex Zelter, Daniel Ziemianowicz, Alexander Leitner, Andrea Sinz
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. Analytical chemistry 91 (11) (2019)
Andrew Keller, Juan D Chavez, Jimmy K Eng, Zorian Thornton, James E Bruce
Tools for 3D Interactome Visualization. Journal of proteome research 18 (2) (2018)
Jared P Mohr, Poorna Perumalla, Juan D Chavez, Jimmy K Eng, James E Bruce
Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification. Analytical chemistry 90 (10) (2018)
Xuefei Zhong, Arti T Navare, Juan D Chavez, Jimmy K Eng, Devin K Schweppe, James E Bruce
Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers. Journal of proteome research 16 (2) (2016)