Brian J Beliveau (Brian Beliveau)

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 28

Top Topics

Fluorescent Probe

Top Venues

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Robin Aguilar, Conor K Camplisson, Qiaoyi Lin, Karen H Miga, William Stafford Noble, Brian J Beliveau
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes. Nature communications 15 (1) (2024)
Gang Li, Eva K Nichols, Valentino E Browning, Nicolas J Longhi, Conor Camplisson, Brian J Beliveau, William Stafford Noble
Predicting cell cycle stage from 3D single-cell nuclear-stained images. bioRxiv : the preprint server for biology (2024)
Yuzhen Liu, Christopher D McGann, Mary Krebs, Thomas A Perkins, Rose Fields, Conor K Camplisson, David Z Nwizugbo, Chris Hsu, Shayan C Avanessian, Ashley F Tsue, Evan E Kania, David Michael Shechner, Brian J Beliveau, Devin K Schweppe
DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci. bioRxiv : the preprint server for biology (2024)
Yuzhen Liu, Christopher D McGann, Mary Krebs, Thomas A Perkins, Rose Fields, Conor K Camplisson, David Z Nwizugbo, Chris Hsu, Shayan C Avanessian, Ashley F Tsue, Evan E Kania, David Michael Shechner, Brian J Beliveau, Devin K Schweppe
DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci. bioRxiv : the preprint server for biology (2024)
Nikki Bialy, Frank Alber, Brenda J Andrews, Michael Angelo, Brian J Beliveau, Lacramioara Bintu, Alistair Nicol Boettiger, Ulrike Boehm, Claire M Brown, Mahmoud Bukar Maina, James J Chambers, Beth A Cimini, Kevin W Eliceiri, Rachel Errington, Orestis Faklaris, Nathalie Gaudreault, Ronald N Germain, Wojtek J Goscinski, David Grünwald, Michael Halter, Dorit Hanein, John W Hickey, Judith Lacoste, Alex Laude, Emma Lundberg, Jian Ma, Leonel Malacrida, Josh Moore, Glyn Nelson, Elizabeth Kathleen Neumann, Roland Nitschke, Shuichi Onami, Jaime A Pimentel, Anne L Plant, Andrea J Radtke, Bikash Sabata, Denis Schapiro, Johannes Schöneberg, Jeffrey M Spraggins, Damir Sudar, Wouter-Michiel Vierdag, Niels Volkmann, Carolina Wählby, Siyuan Steven Wang, Ziv Rafael Yaniv, Caterina Strambio-De-Castilla
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data. ArXiv (2024)
Robin Aguilar, Conor K Camplisson, Qiaoyi Lin, Karen H Miga, William Stafford Noble, Brian J Beliveau
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes. Nature communications 15 (1) (2024)
Robin Aguilar, Conor K Camplisson, Qiaoyi Lin, Karen H Miga, William Stafford Noble, Brian J Beliveau
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes. Nature communications 15 (1) (2024)
Robin Aguilar, Conor K Camplisson, Qiaoyi Lin, Karen H Miga, William Stafford Noble, Brian J Beliveau
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes. Nature communications 15 (1) (2024)
Robin Aguilar, Conor K Camplisson, Qiaoyi Lin, Karen H Miga, William Stafford Noble, Brian J Beliveau
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes. Nature communications 15 (1) (2024)
Sahar Attar, Valentino E Browning, Yuzhen Liu, Eva K Nichols, Ashley F Tsue, David Michael Shechner, Jay Shendure, Joshua A Lieberman, Shreeram Akilesh, Brian J Beliveau
Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens. bioRxiv : the preprint server for biology (2023)
Sahar Attar, Valentino E Browning, Yuzhen Liu, Eva K Nichols, Ashley F Tsue, David Michael Shechner, Jay Shendure, Joshua A Lieberman, Shreeram Akilesh, Brian J Beliveau
Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens. bioRxiv : the preprint server for biology (2023)
Serena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, Ruslan I Sadreyev, Kazuki Kurimoto, Yukihiro Yabuta, Raffaele Ricci, Pauline Audergon, Moritz Bauer, Mitinori Saitou, Konrad Hochedlinger, Brian J Beliveau, Maria Pia Cosma, Jeannie T Lee, Bernhard Payer
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America 120 (4) (2023)
Serena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, Ruslan I Sadreyev, Kazuki Kurimoto, Yukihiro Yabuta, Raffaele Ricci, Pauline Audergon, Moritz Bauer, Mitinori Saitou, Konrad Hochedlinger, Brian J Beliveau, Maria Pia Cosma, Jeannie T Lee, Bernhard Payer
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America 120 (4) (2023)
Serena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, Ruslan I Sadreyev, Kazuki Kurimoto, Yukihiro Yabuta, Raffaele Ricci, Pauline Audergon, Moritz Bauer, Mitinori Saitou, Konrad Hochedlinger, Brian J Beliveau, Maria Pia Cosma, Jeannie T Lee, Bernhard Payer
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America 120 (4) (2023)
Sahar Attar, Valentino E Browning, Yuzhen Liu, Eva K Nichols, Ashley F Tsue, David Michael Shechner, Jay Shendure, Joshua A Lieberman, Shreeram Akilesh, Brian J Beliveau
Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens. bioRxiv : the preprint server for biology (2023)
Robin Aguilar, Conor K Camplisson, Qiaoyi Lin, Karen H Miga, William S Noble, Brian J Beliveau
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes. bioRxiv : the preprint server for biology (2023)
Serena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, Ruslan I Sadreyev, Kazuki Kurimoto, Yukihiro Yabuta, Raffaele Ricci, Pauline Audergon, Moritz Bauer, Mitinori Saitou, Konrad Hochedlinger, Brian J Beliveau, Maria Pia Cosma, Jeannie T Lee, Bernhard Payer
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America 120 (4) (2023)
Sahar Attar, Valentino E Browning, Yuzhen Liu, Eva K Nichols, Ashley F Tsue, David Michael Shechner, Jay Shendure, Joshua A Lieberman, Shreeram Akilesh, Brian J Beliveau
Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens. bioRxiv : the preprint server for biology (2023)
Serena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, Ruslan I Sadreyev, Kazuki Kurimoto, Yukihiro Yabuta, Raffaele Ricci, Pauline Audergon, Moritz Bauer, Mitinori Saitou, Konrad Hochedlinger, Brian J Beliveau, Maria Pia Cosma, Jeannie T Lee, Bernhard Payer
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America 120 (4) (2023)
Serena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, Ruslan I Sadreyev, Kazuki Kurimoto, Yukihiro Yabuta, Raffaele Ricci, Pauline Audergon, Moritz Bauer, Mitinori Saitou, Konrad Hochedlinger, Brian J Beliveau, Maria Pia Cosma, Jeannie T Lee, Bernhard Payer
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America 120 (4) (2023)
Ashley F Tsue, Evan E Kania, Diana Q Lei, Rose Fields, Christopher D McGann, Elliot Hershberg, Xinxian Deng, Maryanne Kihiu, Shao-En Ong, Christine M Disteche, Sita Kugel, Brian J Beliveau, Devin K Schweppe, David Michael Shechner
Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ . bioRxiv : the preprint server for biology (2023)
Beth K Martin, Chengxiang Qiu, Eva Nichols, Melissa Phung, Rula Green-Gladden, Sanjay R Srivatsan, Ronnie Blecher-Gonen, Brian J Beliveau, Cole Trapnell, Junyue Cao, Jay Shendure
Optimized single-nucleus transcriptional profiling by combinatorial indexing. Nature protocols (2022)
Adam K Glaser, Kevin W Bishop, Lindsey A Barner, Etsuo A Susaki, Shimpei I Kubota, Gan Gao, Robert B Serafin, Pooja Balaram, Emily Turschak, Philip R Nicovich, Hoyin Lai, Luciano A G Lucas, Yating Yi, Eva K Nichols, Hongyi Huang, Nicholas P Reder, Jasmine J Wilson, Ramya Sivakumar, Elya Shamskhou, Caleb R Stoltzfus, Xing Wei, Andrew K Hempton, Marko Pende, Prayag Murawala, Hans-Ulrich Dodt, Takato Imaizumi, Jay Shendure, Brian J Beliveau, Michael Y Gerner, Li Xin, Hu Zhao, Lawrence D True, R Clay Reid, Jayaram Chandrashekar, Hiroki R Ueda, Karel Svoboda, Jonathan T C Liu
A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues. Nature methods 19 (5) (2022)
Elliot A Hershberg, Conor K Camplisson, Jennie L Close, Sahar Attar, Ryan Chern, Yuzhen Liu, Shreeram Akilesh, Philip R Nicovich, Brian J Beliveau
PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments. Nature methods 18 (8) (2021)
Yuh Chwen G Lee, Yuki Ogiyama, Nuno M C Martins, Brian J Beliveau, David Acevedo, Chao-Ting Wu, Giacomo Cavalli, Gary H Karpen
Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin. PLoS genetics 16 (3) (2020)
Sinem K Saka, Yu Wang, Jocelyn Y Kishi, Allen Zhu, Yitian Zeng, Wenxin Xie, Koray Kirli, Clarence Yapp, Marcelo Cicconet, Brian J Beliveau, Sylvain W Lapan, Siyuan Yin, Millicent Lin, Edward S Boyden, Pascal S Kaeser, German Pihan, George M Church, Peng Yin
Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues. Nature biotechnology 37 (9) (2019)
Jocelyn Y Kishi, Sylvain W Lapan, Brian J Beliveau, Emma R West, Allen Zhu, Hiroshi M Sasaki, Sinem K Saka, Yu Wang, Constance L Cepko, Peng Yin
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues. Nature methods 16 (6) (2019)
Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G Ebeling, Brian J Beliveau, Hiroshi M Sasaki, S Dean Lee, Son C Nguyen, Ruth B McCole, Shyamtanu Chattoraj, Jelena Erceg, Jumana AlHaj Abed, Nuno M C Martins, Huy Q Nguyen, Mohammed A Hannan, Sheikh Russell, Neva C Durand, Suhas S P Rao, Jocelyn Y Kishi, Paula Soler-Vila, Michele Di Pierro, José Nelson Onuchic, Steven P Callahan, John M Schreiner, Jeff A Stuckey, Peng Yin, Erez Lieberman Aiden, Marc A Marti-Renom, Chao-Ting Wu
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling. PLoS genetics 14 (12) (2018)
Stefan F Pinter, David Colognori, Brian J Beliveau, Ruslan I Sadreyev, Bernhard Payer, Eda Yildirim, Chao-Ting Wu, Jeannie T Lee
Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome. Genetics 200 (2) (2015)