Joao A Paulo (Joao Paulo, J A Paulo, João A Paulo)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 181

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Journal of proteome research

Nature

This page only lists publications with an associated author ORCID identifier.

Publications

Benjamin Lennart Springstein, Joao A Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J Wade Harper, Ann Hochschild
Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Sarah C Potter, Bettine E Gibbs, Forrest A Hammel, Cassandra M Joiner, Joao A Paulo, John Janetzko, Zebulon G Levine, George Q Fei, Stephen J Haggarty, Suzanne Walker
Dissecting OGT's TPR domain to identify determinants of cellular function. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Qingyu Luo, Evangeline G Raulston, Miguel A Prado, Xiaowei Wu, Kira Gritsman, Karley S Whalen, Kezhi Yan, Christopher A G Booth, Ran Xu, Peter van Galen, John G Doench, Shai Shimony, Henry W Long, Donna S Neuberg, Joao A Paulo, Andrew A Lane
Targetable leukaemia dependency on noncanonical PI3Kγ signalling. Nature (2024)
Rafael A Talavara, Beth E Prichard, Robert A Sommer, Ricardo M Leitao, Christopher J Sarabia, Semin Hazir, Joao A Paulo, Steven P Gygi, Douglas R Kellogg
Cell growth and nutrient availability control the mitotic exit signaling network in budding yeast. The Journal of cell biology 223 (8) (2024)
Seyed Shahab Oddin Mirshahvaladi, Nitin Chitranshi, Ardeshir Amirkhani, Rashi Rajput, Devaraj Basavarajappa, Roshana Vander Wall, Dana Pascovici, Angela Godinez, Giovanna Galliciotti, Joao A Paulo, Veer Gupta, Stuart L Graham, Veer B Gupta, Mehdi Mirzaei
Quantitative Proteomics Reveal Region-Specific Alterations in Neuroserpin-Deficient Mouse Brain and Retina: Insights into Serpini1 Function. Proteomes 12 (1) (2024)
Melissa J Hoyer, Cristina Capitanio, Ian R Smith, Julia C Paoli, Anna Bieber, Yizhi Jiang, Joao A Paulo, Miguel A Gonzalez-Lozano, Wolfgang Baumeister, Florian Wilfling, Brenda A Schulman, J Wade Harper
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature cell biology 26 (3) (2024)
Chrysanthi Kagiou, Jose A Cisneros, Jakob Farnung, Joanna Liwocha, Fabian Offensperger, Kevin Dong, Ka Yang, Gary Tin, Christina S Horstmann, Matthias Hinterndorfer, Joao A Paulo, Natalie S Scholes, Juan Sanchez Avila, Michaela Fellner, Florian Andersch, J Thomas Hannich, Johannes Zuber, Stefan Kubicek, Steven P Gygi, Brenda A Schulman, Georg E Winter
Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradation. Nature communications 15 (1) (2024)
José Pedro Castro, Anastasia V Shindyapina, Alessandro Barbieri, Albert K Ying, Olga S Strelkova, Joao A Paulo, Alexander Tyshkovskiy, Rico Meinl, Csaba Kerepesi, Anna P Petrashen, Marco Mariotti, Margarita V Meer, Yan Hu, Alexander Karamyshev, Grigoriy Losyev, Mafalda Galhardo, Elsa Logarinho, Artur A Indzhykulian, Steven P Gygi, John M Sedivy, John P Manis, Vadim N Gladyshev
Age-associated clonal B cells drive B cell lymphoma in mice. Nature aging (2024)
Benjamin E Gewurz, Rui Guo, Matthew Y Lim, Hardik Shah, Joao A Paulo, Yuchen Zhang, Haopeng Yang, Liang Wei Wang, Daniel Strebinger, Nicolas Smith, Meng Li, Merrin Leong, Michael Lutchenkov, Jin-Hua Liang, Zhixuan Li, Yin Wang, Rishi Puri, Ari Melnick, Michael Green, John M Asara, Adonia Papathanassiu, Steven P Gygi, Vamsi K Mootha
Multi-omic Analysis of Human B-cell Activation Reveals a Key Lysosomal BCAT1 Role in mTOR Hyperactivation by B-cell receptor and TLR9. Research square (2024)
Melissa J Hoyer, Cristina Capitanio, Ian R Smith, Julia C Paoli, Anna Bieber, Yizhi Jiang, Joao A Paulo, Miguel A Gonzalez-Lozano, Wolfgang Baumeister, Florian Wilfling, Brenda A Schulman, J Wade Harper
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature cell biology 26 (3) (2024)
Rafael A Talavara, Beth E Prichard, Robert A Sommer, Ricardo M Leitao, Christopher J Sarabia, Semin Hazir, Joao A Paulo, Steven P Gygi, Douglas R Kellogg
Cell growth and nutrient availability control the mitotic exit signaling network in budding yeast. The Journal of cell biology 223 (8) (2024)
Qingyu Luo, Evangeline G Raulston, Miguel A Prado, Xiaowei Wu, Kira Gritsman, Karley S Whalen, Kezhi Yan, Christopher A G Booth, Ran Xu, Peter van Galen, John G Doench, Shai Shimony, Henry W Long, Donna S Neuberg, Joao A Paulo, Andrew A Lane
Targetable leukaemia dependency on noncanonical PI3Kγ signalling. Nature 630 (8015) (2024)
Felix Kraus, Yuchen He, Sharan Swarup, Katherine A Overmyer, Yizhi Jiang, Johann Brenner, Cristina Capitanio, Anna Bieber, Annie Jen, Nicole M Nightingale, Benton J Anderson, Chan Lee, Joao A Paulo, Ian R Smith, Jürgen M Plitzko, Brenda A Schulman, Florian Wilfling, Joshua J Coon, J Wade Harper
Lysosomal storage disease proteo/lipidomic profiling using nMOST links ferritinophagy with mitochondrial iron deficiencies in cells lacking NPC2. bioRxiv : the preprint server for biology (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports 25 (2) (2024)
Sarah C Potter, Bettine E Gibbs, Forrest A Hammel, Cassandra M Joiner, Joao A Paulo, John Janetzko, Zebulon G Levine, George Q Fei, Stephen J Haggarty, Suzanne Walker
Dissecting OGT's TPR domain to identify determinants of cellular function. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Sarah C Potter, Bettine E Gibbs, Forrest A Hammel, Cassandra M Joiner, Joao A Paulo, John Janetzko, Zebulon G Levine, George Q Fei, Stephen J Haggarty, Suzanne Walker
Dissecting OGT's TPR domain to identify determinants of cellular function. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Qingyu Luo, Evangeline G Raulston, Miguel A Prado, Xiaowei Wu, Kira Gritsman, Karley S Whalen, Kezhi Yan, Christopher A G Booth, Ran Xu, Peter van Galen, John G Doench, Shai Shimony, Henry W Long, Donna S Neuberg, Joao A Paulo, Andrew A Lane
Targetable leukaemia dependency on noncanonical PI3Kγ signalling. Nature 630 (8015) (2024)
Gianna M Fote, Vinay V Eapen, Ryan G Lim, Clinton Yu, Lisa Salazar, Nicolette R McClure, Jharrayne McKnight, Thai B Nguyen, Marie C Heath, Alice L Lau, Mark A Villamil, Ricardo Miramontes, Ian H Kratter, Steven Finkbeiner, Jack C Reidling, Joao A Paulo, Peter Kaiser, Lan Huang, David E Housman, Leslie M Thompson, Joan S Steffan
Huntingtin contains an ubiquitin-binding domain and regulates lysosomal targeting of mitochondrial and RNA-binding proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (32) (2024)
L Robert Hollingsworth, Priya Veeraraghavan, Joao A Paulo, J Wade Harper, Isabella Rauch
Spatiotemporal proteomic profiling of cellular responses to NLRP3 agonists. bioRxiv : the preprint server for biology (2024)
Sarah C Potter, Bettine E Gibbs, Forrest A Hammel, Cassandra M Joiner, Joao A Paulo, John Janetzko, Zebulon G Levine, George Q Fei, Stephen J Haggarty, Suzanne Walker
Dissecting OGT's TPR domain to identify determinants of cellular function. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Chrysanthi Kagiou, Jose A Cisneros, Jakob Farnung, Joanna Liwocha, Fabian Offensperger, Kevin Dong, Ka Yang, Gary Tin, Christina S Horstmann, Matthias Hinterndorfer, Joao A Paulo, Natalie S Scholes, Juan Sanchez Avila, Michaela Fellner, Florian Andersch, J Thomas Hannich, Johannes Zuber, Stefan Kubicek, Steven P Gygi, Brenda A Schulman, Georg E Winter
Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradation. Nature communications 15 (1) (2024)
Tiasha A Shafiq, Juntao Yu, Wenzhi Feng, Yi-Zhe Zhang, Haining Zhou, Joao A Paulo, Steven P Gygi, Danesh Moazed
Genomic context- and H2AK119 ubiquitination-dependent inheritance of human Polycomb silencing. Science advances 10 (19) (2024)
Benjamin Lennart Springstein, Joao A Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J Wade Harper, Ann Hochschild
Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports 25 (2) (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports 25 (2) (2024)
Melissa J Hoyer, Cristina Capitanio, Ian R Smith, Julia C Paoli, Anna Bieber, Yizhi Jiang, Joao A Paulo, Miguel A Gonzalez-Lozano, Wolfgang Baumeister, Florian Wilfling, Brenda A Schulman, J Wade Harper
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature cell biology (2024)
Tiasha A Shafiq, Juntao Yu, Wenzhi Feng, Yi-Zhe Zhang, Haining Zhou, Joao A Paulo, Steven P Gygi, Danesh Moazed
Genomic context- and H2AK119 ubiquitination-dependent inheritance of human Polycomb silencing. Science advances 10 (19) (2024)
L Robert Hollingsworth, Priya Veeraraghavan, Joao A Paulo, J Wade Harper, Isabella Rauch
Spatiotemporal proteomic profiling of cellular responses to NLRP3 agonists. bioRxiv : the preprint server for biology (2024)
Benjamin Lennart Springstein, Joao A Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J Wade Harper, Ann Hochschild
Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Sarah C Potter, Bettine E Gibbs, Forrest A Hammel, Cassandra M Joiner, Joao A Paulo, John Janetzko, Zebulon G Levine, George Q Fei, Stephen J Haggarty, Suzanne Walker
Dissecting OGT's TPR domain to identify determinants of cellular function. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports (2024)
Paul A DaRosa, Ivan Penchev, Samantha C Gumbin, Francesco Scavone, Magda Wąchalska, Joao A Paulo, Alban Ordureau, Joshua J Peter, Yogesh Kulathu, J Wade Harper, Thomas A Becker, Roland Beckmann, Ron R Kopito
UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature 627 (8003) (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports (2024)
L Robert Hollingsworth, Priya Veeraraghavan, Joao A Paulo, J Wade Harper, Isabella Rauch
Spatiotemporal proteomic profiling of cellular responses to NLRP3 agonists. bioRxiv : the preprint server for biology (2024)
Qingyu Luo, Evangeline G Raulston, Miguel A Prado, Xiaowei Wu, Kira Gritsman, Karley S Whalen, Kezhi Yan, Christopher A G Booth, Ran Xu, Peter van Galen, John G Doench, Shai Shimony, Henry W Long, Donna S Neuberg, Joao A Paulo, Andrew A Lane
Targetable leukaemia dependency on noncanonical PI3Kγ signalling. Nature 630 (8015) (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports (2024)
L Robert Hollingsworth, Priya Veeraraghavan, Joao A Paulo, J Wade Harper, Isabella Rauch
Spatiotemporal proteomic profiling of cellular responses to NLRP3 agonists. bioRxiv : the preprint server for biology (2024)
Benjamin Lennart Springstein, Joao A Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J Wade Harper, Ann Hochschild
Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
José Pedro Castro, Anastasia V Shindyapina, Alessandro Barbieri, Albert K Ying, Olga S Strelkova, Joao A Paulo, Alexander Tyshkovskiy, Rico Meinl, Csaba Kerepesi, Anna P Petrashen, Marco Mariotti, Margarita V Meer, Yan Hu, Alexander Karamyshev, Grigoriy Losyev, Mafalda Galhardo, Elsa Logarinho, Artur A Indzhykulian, Steven P Gygi, John M Sedivy, John P Manis, Vadim N Gladyshev
Age-associated clonal B cells drive B cell lymphoma in mice. Nature aging (2024)
Paul A DaRosa, Ivan Penchev, Samantha C Gumbin, Francesco Scavone, Magda Wąchalska, Joao A Paulo, Alban Ordureau, Joshua J Peter, Yogesh Kulathu, J Wade Harper, Thomas A Becker, Roland Beckmann, Ron R Kopito
UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature 627 (8003) (2024)
Qingyu Luo, Evangeline G Raulston, Miguel A Prado, Xiaowei Wu, Kira Gritsman, Karley S Whalen, Kezhi Yan, Christopher A G Booth, Ran Xu, Peter van Galen, John G Doench, Shai Shimony, Henry W Long, Donna S Neuberg, Joao A Paulo, Andrew A Lane
Targetable leukaemia dependency on noncanonical PI3Kγ signalling. Nature (2024)
Melissa J Hoyer, Cristina Capitanio, Ian R Smith, Julia C Paoli, Anna Bieber, Yizhi Jiang, Joao A Paulo, Miguel A Gonzalez-Lozano, Wolfgang Baumeister, Florian Wilfling, Brenda A Schulman, J Wade Harper
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature cell biology 26 (3) (2024)
Paul A DaRosa, Ivan Penchev, Samantha C Gumbin, Francesco Scavone, Magda Wąchalska, Joao A Paulo, Alban Ordureau, Joshua J Peter, Yogesh Kulathu, J Wade Harper, Thomas A Becker, Roland Beckmann, Ron R Kopito
UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature 627 (8003) (2024)
Rafael A Talavara, Beth E Prichard, Robert A Sommer, Ricardo M Leitao, Christopher J Sarabia, Semin Hazir, Joao A Paulo, Steven P Gygi, Douglas R Kellogg
Cell growth and nutrient availability control the mitotic exit signaling network in budding yeast. The Journal of cell biology 223 (8) (2024)
Benjamin E Gewurz, Rui Guo, Matthew Y Lim, Hardik Shah, Joao A Paulo, Yuchen Zhang, Haopeng Yang, Liang Wei Wang, Daniel Strebinger, Nicolas Smith, Meng Li, Merrin Leong, Michael Lutchenkov, Jin-Hua Liang, Zhixuan Li, Yin Wang, Rishi Puri, Ari Melnick, Michael Green, John M Asara, Adonia Papathanassiu, Steven P Gygi, Vamsi K Mootha
Multi-omic Analysis of Human B-cell Activation Reveals a Key Lysosomal BCAT1 Role in mTOR Hyperactivation by B-cell receptor and TLR9. Research square (2024)
Gianna M Fote, Vinay V Eapen, Ryan G Lim, Clinton Yu, Lisa Salazar, Nicolette R McClure, Jharrayne McKnight, Thai B Nguyen, Marie C Heath, Alice L Lau, Mark A Villamil, Ricardo Miramontes, Ian H Kratter, Steven Finkbeiner, Jack C Reidling, Joao A Paulo, Peter Kaiser, Lan Huang, David E Housman, Leslie M Thompson, Joan S Steffan
Huntingtin contains an ubiquitin-binding domain and regulates lysosomal targeting of mitochondrial and RNA-binding proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (32) (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports 25 (2) (2024)
Melissa J Hoyer, Cristina Capitanio, Ian R Smith, Julia C Paoli, Anna Bieber, Yizhi Jiang, Joao A Paulo, Miguel A Gonzalez-Lozano, Wolfgang Baumeister, Florian Wilfling, Brenda A Schulman, J Wade Harper
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature cell biology 26 (3) (2024)
Melissa J Hoyer, Cristina Capitanio, Ian R Smith, Julia C Paoli, Anna Bieber, Yizhi Jiang, Joao A Paulo, Miguel A Gonzalez-Lozano, Wolfgang Baumeister, Florian Wilfling, Brenda A Schulman, J Wade Harper
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature cell biology (2024)
Benjamin E Gewurz, Rui Guo, Matthew Y Lim, Hardik Shah, Joao A Paulo, Yuchen Zhang, Haopeng Yang, Liang Wei Wang, Daniel Strebinger, Nicolas Smith, Meng Li, Merrin Leong, Michael Lutchenkov, Jin-Hua Liang, Zhixuan Li, Yin Wang, Rishi Puri, Ari Melnick, Michael Green, John M Asara, Adonia Papathanassiu, Steven P Gygi, Vamsi K Mootha
Multi-omic Analysis of Human B-cell Activation Reveals a Key Lysosomal BCAT1 Role in mTOR Hyperactivation by B-cell receptor and TLR9. Research square (2024)
Judith Frydman, Ching-Chieh Chou, Ryan Vest, Miguel A Prado, Joshua Wilson-Grady, Joao A Paulo, Yohei Shibuya, Patricia Moran Losada, Ting-Ting Lee, Jian Luo, Steven P Gygi, Jeffrey W Kelly, Daniel Finley, Marius Wernig, Tony Wyss-Coray
Human tNeurons reveal aging-linked proteostasis deficits driving Alzheimer's phenotypes. Research square (2024)
Paul A DaRosa, Ivan Penchev, Samantha C Gumbin, Francesco Scavone, Magda Wąchalska, Joao A Paulo, Alban Ordureau, Joshua J Peter, Yogesh Kulathu, J Wade Harper, Thomas A Becker, Roland Beckmann, Ron R Kopito
UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature 627 (8003) (2024)
Clarice Gareri, Conrad T Pfeiffer, Xue Jiang, Joao A Paulo, Steven P Gygi, Uyen Pham, Anand Chundi, Laura M Wingler, Dean P Staus, Tomasz Maciej Stepniewski, Jana Selent, Emilio Y Lucero, Alyssa Grogan, Sudarshan Rajagopal, Howard A Rockman
Phosphorylation patterns in the AT1R C-terminal tail specify distinct downstream signaling pathways. Science signaling 17 (849) (2024)
Felix Kraus, Yuchen He, Sharan Swarup, Katherine A Overmyer, Yizhi Jiang, Johann Brenner, Cristina Capitanio, Anna Bieber, Annie Jen, Nicole M Nightingale, Benton J Anderson, Chan Lee, Joao A Paulo, Ian R Smith, Jürgen M Plitzko, Brenda A Schulman, Florian Wilfling, Joshua J Coon, J Wade Harper
Lysosomal storage disease proteo/lipidomic profiling using nMOST links ferritinophagy with mitochondrial iron deficiencies in cells lacking NPC2. bioRxiv : the preprint server for biology (2024)
Benjamin Lennart Springstein, Joao A Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J Wade Harper, Ann Hochschild
Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Brittany A Ahlstedt, Rakesh Ganji, Sirisha Mukkavalli, Joao A Paulo, Steve P Gygi, Malavika Raman
UBXN1 maintains ER proteostasis and represses UPR activation by modulating translation. EMBO reports 25 (2) (2024)
Gianna M Fote, Vinay V Eapen, Ryan G Lim, Clinton Yu, Lisa Salazar, Nicolette R McClure, Jharrayne McKnight, Thai B Nguyen, Marie C Heath, Alice L Lau, Mark A Villamil, Ricardo Miramontes, Ian H Kratter, Steven Finkbeiner, Jack C Reidling, Joao A Paulo, Peter Kaiser, Lan Huang, David E Housman, Leslie M Thompson, Joan S Steffan
Huntingtin contains an ubiquitin-binding domain and regulates lysosomal targeting of mitochondrial and RNA-binding proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (32) (2024)
Felix Kraus, Yuchen He, Sharan Swarup, Katherine A Overmyer, Yizhi Jiang, Johann Brenner, Cristina Capitanio, Anna Bieber, Annie Jen, Nicole M Nightingale, Benton J Anderson, Chan Lee, Joao A Paulo, Ian R Smith, Jürgen M Plitzko, Brenda A Schulman, Florian Wilfling, Joshua J Coon, J Wade Harper
Lysosomal storage disease proteo/lipidomic profiling using nMOST links ferritinophagy with mitochondrial iron deficiencies in cells lacking NPC2. bioRxiv : the preprint server for biology (2024)
Qingyu Luo, Evangeline G Raulston, Miguel A Prado, Xiaowei Wu, Kira Gritsman, Karley S Whalen, Kezhi Yan, Christopher A G Booth, Ran Xu, Peter van Galen, John G Doench, Shai Shimony, Henry W Long, Donna S Neuberg, Joao A Paulo, Andrew A Lane
Targetable leukaemia dependency on noncanonical PI3Kγ signalling. Nature (2024)
Tiasha A Shafiq, Juntao Yu, Wenzhi Feng, Yi-Zhe Zhang, Haining Zhou, Joao A Paulo, Steven P Gygi, Danesh Moazed
Genomic context- and H2AK119 ubiquitination-dependent inheritance of human Polycomb silencing. Science advances 10 (19) (2024)
Benjamin Lennart Springstein, Joao A Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J Wade Harper, Ann Hochschild
Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Gianna M Fote, Vinay V Eapen, Ryan G Lim, Clinton Yu, Lisa Salazar, Nicolette R McClure, Jharrayne McKnight, Thai B Nguyen, Marie C Heath, Alice L Lau, Mark A Villamil, Ricardo Miramontes, Ian H Kratter, Steven Finkbeiner, Jack C Reidling, Joao A Paulo, Peter Kaiser, Lan Huang, David E Housman, Leslie M Thompson, Joan S Steffan
Huntingtin contains an ubiquitin-binding domain and regulates lysosomal targeting of mitochondrial and RNA-binding proteins. Proceedings of the National Academy of Sciences of the United States of America 121 (32) (2024)
Chrysanthi Kagiou, Jose A Cisneros, Jakob Farnung, Joanna Liwocha, Fabian Offensperger, Kevin Dong, Ka Yang, Gary Tin, Christina S Horstmann, Matthias Hinterndorfer, Joao A Paulo, Natalie S Scholes, Juan Sanchez Avila, Michaela Fellner, Florian Andersch, J Thomas Hannich, Johannes Zuber, Stefan Kubicek, Steven P Gygi, Brenda A Schulman, Georg E Winter
Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradation. Nature communications 15 (1) (2024)
Allison L Fisher, Sydney Phillips, Chia-Yu Wang, Joao A Paulo, Xia Xiao, Gillian A Moschetta, Adhvaith Sridhar, Joseph D Mancias, Jodie L Babitt
Endothelial ZIP8 plays a minor role in BMP6 regulation by iron in mice. Blood (2024)
Allison L Fisher, Sydney Phillips, Chia-Yu Wang, Joao A Paulo, Xia Xiao, Gillian A Moschetta, Adhvaith Sridhar, Joseph D Mancias, Jodie L Babitt
Endothelial ZIP8 plays a minor role in BMP6 regulation by iron in mice. Blood 143 (23) (2024)
Melissa J Hoyer, Cristina Capitanio, Ian R Smith, Julia C Paoli, Anna Bieber, Yizhi Jiang, Joao A Paulo, Miguel A Gonzalez-Lozano, Wolfgang Baumeister, Florian Wilfling, Brenda A Schulman, J Wade Harper
Combinatorial selective ER-phagy remodels the ER during neurogenesis. Nature cell biology 26 (3) (2024)
Seyed Shahab Oddin Mirshahvaladi, Nitin Chitranshi, Ardeshir Amirkhani, Rashi Rajput, Devaraj Basavarajappa, Roshana Vander Wall, Dana Pascovici, Angela Godinez, Giovanna Galliciotti, Joao A Paulo, Veer Gupta, Stuart L Graham, Veer B Gupta, Mehdi Mirzaei
Quantitative Proteomics Reveal Region-Specific Alterations in Neuroserpin-Deficient Mouse Brain and Retina: Insights into Serpini1 Function. Proteomes 12 (1) (2024)
Allison L Fisher, Sydney Phillips, Chia-Yu Wang, Joao A Paulo, Xia Xiao, Gillian A Moschetta, Adhvaith Sridhar, Joseph D Mancias, Jodie L Babitt
Endothelial ZIP8 plays a minor role in BMP6 regulation by iron in mice. Blood (2024)
Tiasha A Shafiq, Juntao Yu, Wenzhi Feng, Yi-Zhe Zhang, Haining Zhou, Joao A Paulo, Steven P Gygi, Danesh Moazed
Genomic context- and H2AK119 ubiquitination-dependent inheritance of human Polycomb silencing. Science advances 10 (19) (2024)
Chrysanthi Kagiou, Jose A Cisneros, Jakob Farnung, Joanna Liwocha, Fabian Offensperger, Kevin Dong, Ka Yang, Gary Tin, Christina S Horstmann, Matthias Hinterndorfer, Joao A Paulo, Natalie S Scholes, Juan Sanchez Avila, Michaela Fellner, Florian Andersch, J Thomas Hannich, Johannes Zuber, Stefan Kubicek, Steven P Gygi, Brenda A Schulman, Georg E Winter
Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradation. Nature communications 15 (1) (2024)
Judith Frydman, Ching-Chieh Chou, Ryan Vest, Miguel A Prado, Joshua Wilson-Grady, Joao A Paulo, Yohei Shibuya, Patricia Moran Losada, Ting-Ting Lee, Jian Luo, Steven P Gygi, Jeffrey W Kelly, Daniel Finley, Marius Wernig, Tony Wyss-Coray
Human tNeurons reveal aging-linked proteostasis deficits driving Alzheimer's phenotypes. Research square (2024)
Qingyu Luo, Evangeline G Raulston, Miguel A Prado, Xiaowei Wu, Kira Gritsman, Karley S Whalen, Kezhi Yan, Christopher A G Booth, Ran Xu, Peter van Galen, John G Doench, Shai Shimony, Henry W Long, Donna S Neuberg, Joao A Paulo, Andrew A Lane
Targetable leukaemia dependency on noncanonical PI3Kγ signalling. Nature (2024)
Seyed Shahab Oddin Mirshahvaladi, Nitin Chitranshi, Ardeshir Amirkhani, Rashi Rajput, Devaraj Basavarajappa, Roshana Vander Wall, Dana Pascovici, Angela Godinez, Giovanna Galliciotti, Joao A Paulo, Veer Gupta, Stuart L Graham, Veer B Gupta, Mehdi Mirzaei
Quantitative Proteomics Reveal Region-Specific Alterations in Neuroserpin-Deficient Mouse Brain and Retina: Insights into Serpini1 Function. Proteomes 12 (1) (2024)
Felix Kraus, Yuchen He, Sharan Swarup, Katherine A Overmyer, Yizhi Jiang, Johann Brenner, Cristina Capitanio, Anna Bieber, Annie Jen, Nicole M Nightingale, Benton J Anderson, Chan Lee, Joao A Paulo, Ian R Smith, Jürgen M Plitzko, Brenda A Schulman, Florian Wilfling, Joshua J Coon, J Wade Harper
Lysosomal storage disease proteo/lipidomic profiling using nMOST links ferritinophagy with mitochondrial iron deficiencies in cells lacking NPC2. bioRxiv : the preprint server for biology (2024)
Paul A DaRosa, Ivan Penchev, Samantha C Gumbin, Francesco Scavone, Magda Wąchalska, Joao A Paulo, Alban Ordureau, Joshua J Peter, Yogesh Kulathu, J Wade Harper, Thomas A Becker, Roland Beckmann, Ron R Kopito
UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature (2024)
Ching-Chieh Chou, Ryan Vest, Miguel A Prado, Joshua Wilson-Grady, Joao A Paulo, Yohei Shibuya, Patricia Moran-Losada, Ting-Ting Lee, Jian Luo, Steven P Gygi, Jeffrey W Kelly, Daniel Finley, Marius Wernig, Tony Wyss-Coray, Judith Frydman
Human tNeurons reveal aging-linked proteostasis deficits driving Alzheimer's phenotypes. Research square (2024)
Allison L Fisher, Sydney Phillips, Chia-Yu Wang, Joao A Paulo, Xia Xiao, Gillian A Moschetta, Adhvaith Sridhar, Joseph D Mancias, Jodie L Babitt
Endothelial ZIP8 plays a minor role in BMP6 regulation by iron in mice. Blood 143 (23) (2024)
L Robert Hollingsworth, Priya Veeraraghavan, Joao A Paulo, J Wade Harper, Isabella Rauch
Spatiotemporal proteomic profiling of cellular responses to NLRP3 agonists. bioRxiv : the preprint server for biology (2024)
Sirimuvva Tadepalli, Derek R Clements, Sanjana Saravanan, Rebeca Arroyo Hornero, Anja Lüdtke, Beau Blackmore, Joao A Paulo, Andres Gottfried-Blackmore, David Seong, Soyoon Park, Leslie Chan, Benjamin J Kopecky, Zhaoyuan Liu, Florent Ginhoux, Kory J Lavine, John Patrick Murphy, Matthias Mack, Edward E Graves, Juliana Idoyaga
Rapid recruitment and IFN-I-mediated activation of monocytes dictate focal radiotherapy efficacy. Science immunology 8 (84) (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Valentina Rossio, Xinyue Liu, Joao A Paulo
Comparative Proteomic Analysis of Two Commonly Used Laboratory Yeast Strains: W303 and BY4742. Proteomes 11 (4) (2023)
Sarah C Erlandson, Shaun Rawson, James Osei-Owusu, Kelly P Brock, Xinyue Liu, Joao A Paulo, Julian Mintseris, Steven P Gygi, Debora S Marks, Xiaojing Cong, Andrew C Kruse
The relaxin receptor RXFP1 signals through a mechanism of autoinhibition. Nature chemical biology (2023)
Sarah C Erlandson, Shaun Rawson, James Osei-Owusu, Kelly P Brock, Xinyue Liu, Joao A Paulo, Julian Mintseris, Steven P Gygi, Debora S Marks, Xiaojing Cong, Andrew C Kruse
The relaxin receptor RXFP1 signals through a mechanism of autoinhibition. Nature chemical biology (2023)
Kevin D Dong, Ernst W Schmid, Ryan D Bomgarden, Jae H Choi, Steven P Gygi, Qing Yu, Joao A Paulo
Adapting an Isobaric Tag-Labeled Yeast Peptide Standard to Develop Targeted Proteomics Assays. Journal of proteome research (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Morteza Abyadeh, Veer B Gupta, Xinyue Liu, Valentina Rossio, Mehdi Mirzaei, Jennifer Cornish, Joao A Paulo, Paul A Haynes
Proteome-Wide Profiling Using Sample Multiplexing of a Human Cell Line Treated with Cannabidiol (CBD) and Tetrahydrocannabinol (THC). Proteomes 11 (4) (2023)
Sarah C Erlandson, Shaun Rawson, James Osei-Owusu, Kelly P Brock, Xinyue Liu, Joao A Paulo, Julian Mintseris, Steven P Gygi, Debora S Marks, Xiaojing Cong, Andrew C Kruse
The relaxin receptor RXFP1 signals through a mechanism of autoinhibition. Nature chemical biology (2023)
Felix Kraus, Ellen A Goodall, Ian R Smith, Yizhi Jiang, Julia C Paoli, Frank Adolf, Jiuchun Zhang, Joao A Paulo, Brenda A Schulman, J Wade Harper
PARK15/FBXO7 is dispensable for PINK1/Parkin mitophagy in iNeurons and HeLa cell systems. EMBO reports (2023)
Ning Wang, Yoko Shibata, Joao A Paulo, Steven P Gygi, Tom A Rapoport
A conserved membrane curvature-generating protein is crucial for autophagosome formation in fission yeast. Nature communications 14 (1) (2023)
Joel S Gygi, Xinyue Liu, Benjamin P Levi, Joao A Paulo
Proteome-wide abundance profiling of yeast deletion strains for GET pathway members using sample multiplexing. Proteomics (2023)
Kelsey L Hickey, Sharan Swarup, Ian R Smith, Julia C Paoli, Enya Miguel Whelan, Joao A Paulo, J Wade Harper
Proteome census upon nutrient stress reveals Golgiphagy membrane receptors. Nature (2023)
Tian Zhang, Xinyue Liu, Valentina Rossio, Shane L Dawson, Steven P Gygi, Joao A Paulo
Enhancing Proteome Coverage by Using Strong Anion-Exchange in Tandem with Basic-pH Reversed-Phase Chromatography for Sample Multiplexing-Based Proteomics. Journal of proteome research (2023)
Fabin Dang, Lei Bai, Jiazhen Dong, Xiaoping Hu, Jingchao Wang, Joao A Paulo, Yan Xiong, Xiaowei Liang, Yishuang Sun, Yuncai Chen, Ming Guo, Xin Wang, Zhixiang Huang, Hiroyuki Inuzuka, Li Chen, Chen Chu, Jianping Liu, Tao Zhang, Abdol-Hossein Rezaeian, Jing Liu, Husnu Ümit Kaniskan, Bo Zhong, Jinfang Zhang, Michael Letko, Jian Jin, Ke Lan, Wenyi Wei
USP2 inhibition prevents infection with ACE2-dependent coronaviruses in vitro and is protective against SARS-CoV-2 in mice. Science translational medicine 15 (725) (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Silje Kjølle, Kenneth Finne, Even Birkeland, Vandana Ardawatia, Ingeborg Winge, Sura Aziz, Gøril Knutsvik, Elisabeth Wik, Joao A Paulo, Heidrun Vethe, Dimitrios Kleftogiannis, Lars Andreas Akslen
Hypoxia induced responses are reflected in the stromal proteome of breast cancer. Nature communications 14 (1) (2023)
Rakesh Ganji, Joao A Paulo, Yuecheng Xi, Ian Kline, Jiang Zhu, Christoph Stephan Clemen, Conrad C Weihl, John G Purdy, Steven P Gygi, Malavika Raman
The p97-UBXD8 complex regulates ER-Mitochondria contact sites by altering membrane lipid saturation and composition. Nature communications 14 (1) (2023)
Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith A Simcox, Gary A Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, Steven P Gygi
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nature communications 14 (1) (2023)
Jonas D Albarnaz, Joanne Kite, Marisa Oliveira, Hanqi Li, Ying Di, Maria H Christensen, Joao A Paulo, Robin Antrobus, Steven P Gygi, Florian Ingo Schmidt, Edward L Huttlin, Geoffrey L Smith, Michael P Weekes
Quantitative proteomics defines mechanisms of antiviral defence and cell death during modified vaccinia Ankara infection. Nature communications 14 (1) (2023)
Rakesh Ganji, Joao A Paulo, Yuecheng Xi, Ian Kline, Jiang Zhu, Christoph Stephan Clemen, Conrad C Weihl, John G Purdy, Steven P Gygi, Malavika Raman
The p97-UBXD8 complex regulates ER-Mitochondria contact sites by altering membrane lipid saturation and composition. Nature communications 14 (1) (2023)
Rakesh Ganji, Joao A Paulo, Yuecheng Xi, Ian Kline, Jiang Zhu, Christoph Stephan Clemen, Conrad C Weihl, John G Purdy, Steven P Gygi, Malavika Raman
The p97-UBXD8 complex regulates ER-Mitochondria contact sites by altering membrane lipid saturation and composition. Nature communications 14 (1) (2023)

Joao A Paulo.css-eqlu8i{font-size:small;padding-left:4px;} (Joao Paulo, J A Paulo, João A Paulo)

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Joao A Paulo (Joao Paulo, J A Paulo, João A Paulo)