Fabian Kern

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 45

Top Topics

Machine Learning

Gene Expression

Top Venues

Nucleic acids research

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine (2024)
Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine 56 (4) (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research 52 (W1) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research 52 (W1) (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine 56 (4) (2024)
Pascal Hirsch, Leidy-Alejandra G Molano, Annika Engel, Jens Zentgraf, Sven Rahmann, Matthias Hannig, Rolf Müller, Fabian Kern, Andreas Keller, Georges P Schmartz
Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics. Nucleic acids research 52 (W1) (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Pascal Hirsch, Leidy-Alejandra G Molano, Annika Engel, Jens Zentgraf, Sven Rahmann, Matthias Hannig, Rolf Müller, Fabian Kern, Andreas Keller, Georges P Schmartz
Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics. Nucleic acids research (2024)
Pascal Hirsch, Leidy-Alejandra G Molano, Annika Engel, Jens Zentgraf, Sven Rahmann, Matthias Hannig, Rolf Müller, Fabian Kern, Andreas Keller, Georges P Schmartz
Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics. Nucleic acids research 52 (W1) (2024)
Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine 56 (4) (2024)
Viktoria Wagner, Fabian Kern, Oliver Hahn, Nicholas Schaum, Nicole Ludwig, Tobias Fehlmann, Annika Engel, Dominic Henn, Shusruto Rishik, Alina Isakova, Michelle Tan, Rene Sit, Norma Neff, Martin Hart, Eckart Meese, Steve Quake, Tony Wyss-Coray, Andreas Keller
Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues. Nature biotechnology (2023)
Viktoria Wagner, Fabian Kern, Oliver Hahn, Nicholas Schaum, Nicole Ludwig, Tobias Fehlmann, Annika Engel, Dominic Henn, Shusruto Rishik, Alina Isakova, Michelle Tan, Rene Sit, Norma Neff, Martin Hart, Eckart Meese, Steve Quake, Tony Wyss-Coray, Andreas Keller
Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues. Nature biotechnology (2023)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges P Schmartz, Fabian Kern, Tobias Fehlmann, Andreas Keller
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations. Nucleic acids research (2023)
Fabian Kern, Thomas Kuhn, Nicole Ludwig, Martin Simon, Laura Gröger, Natalie Fabis, Ernesto Aparicio-Puerta, Abdulrahman Salhab, Tobias Fehlmann, Oliver Hahn, Annika Engel, Viktoria Wagner, Marcus A Koch, Katarzyna Winek, Hermona Soreq, Irina Nazarenko, Gregor Fuhrmann, Tony Wyss-Coray, Eckart Meese, Verena Keller, Matthias W Laschke, Andreas Keller
Ageing-associated small RNA cargo of extracellular vesicles. RNA biology 20 (1) (2023)
Matthias Flotho, Jérémy Amand, Pascal Hirsch, Friederike Grandke, Tony Wyss-Coray, Andreas Keller, Fabian Kern
ZEBRA: a hierarchically integrated gene expression atlas of the murine and human brain at single-cell resolution. Nucleic acids research (2023)
Tal Iram, Fabian Kern, Achint Kaur, Saket Myneni, Allison R Morningstar, Heather Shin, Miguel A Garcia, Lakshmi Yerra, Robert Palovics, Andrew C Yang, Oliver Hahn, Nannan Lu, Steven R Shuken, Michael S Haney, Benoit Lehallier, Manasi Iyer, Jian Luo, Henrik Zetterberg, Andreas Keller, J Bradley Zuchero, Tony Wyss-Coray
Author Correction: Young CSF restores oligodendrogenesis and memory in aged mice via Fgf17. Nature (2022)
Tal Iram, Fabian Kern, Achint Kaur, Saket Myneni, Allison R Morningstar, Heather Shin, Miguel A Garcia, Lakshmi Yerra, Robert Palovics, Andrew C Yang, Oliver Hahn, Nannan Lu, Steven R Shuken, Michael S Haney, Benoit Lehallier, Manasi Iyer, Jian Luo, Henrik Zetterberg, Andreas Keller, J Bradley Zuchero, Tony Wyss-Coray
Young CSF restores oligodendrogenesis and memory in aged mice via Fgf17. Nature 605 (7910) (2022)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges P Schmartz, Tobias Fehlmann, Verena Keller, Annika Engel, Fabian Kern, Michael Hackenberg, Andreas Keller
isomiRdb: microRNA expression at isoform resolution. Nucleic acids research (2022)
Andrew C Yang, Ryan T Vest, Fabian Kern, Davis P Lee, Maayan Agam, Christina A Maat, Patricia M Losada, Michelle B Chen, Nicholas Schaum, Nathalie Khoury, Angus Toland, Kruti Calcuttawala, Heather Shin, Róbert Pálovics, Andrew Shin, Elizabeth Y Wang, Jian Luo, David Gate, Walter J Schulz-Schaeffer, Pauline Chu, Julie A Siegenthaler, M Windy McNerney, Andreas Keller, Tony Wyss-Coray
A human brain vascular atlas reveals diverse mediators of Alzheimer's risk. Nature 603 (7903) (2022)
Róbert Pálovics, Andreas Keller, Nicholas Schaum, Weilun Tan, Tobias Fehlmann, Michael Borja, Fabian Kern, Liana Bonanno, Kruti Calcuttawala, James Webber, Aaron McGeever, null null, Jian Luo, Angela Oliveira Pisco, Jim Karkanias, Norma F Neff, Spyros Darmanis, Stephen R Quake, Tony Wyss-Coray
Molecular hallmarks of heterochronic parabiosis at single-cell resolution. Nature 603 (7900) (2022)
Tal Iram, Fabian Kern, Achint Kaur, Saket Myneni, Allison R Morningstar, Heather Shin, Miguel A Garcia, Lakshmi Yerra, Robert Palovics, Andrew C Yang, Oliver Hahn, Nannan Lu, Steven R Shuken, Michael S Haney, Benoit Lehallier, Manasi Iyer, Jian Luo, Henrik Zetterberg, Andreas Keller, J Bradley Zuchero, Tony Wyss-Coray
Author Correction: Young CSF restores oligodendrogenesis and memory in aged mice via Fgf17. Nature (2022)
Georges P Schmartz, Pascal Hirsch, Jérémy Amand, Jan Dastbaz, Tobias Fehlmann, Fabian Kern, Rolf Müller, Andreas Keller
BusyBee Web: towards comprehensive and differential composition-based metagenomic binning. Nucleic acids research (2022)
Stefanie Warnat-Herresthal, Hartmut Schultze, Krishnaprasad Lingadahalli Shastry, Sathyanarayanan Manamohan, Saikat Mukherjee, Vishesh Garg, Ravi Sarveswara, Kristian Händler, Peter Pickkers, Nasir Ahmad Aziz, Sofia Ktena, Florian Tran, Michael Bitzer, Stephan Ossowski, Nicolas Casadei, Christian Herr, Daniel Petersheim, Uta Behrends, Fabian Kern, Tobias Fehlmann, Philipp Schommers, Clara Lehmann, Max Augustin, Jan Rybniker, Janine Altmüller, Neha Mishra, Joana P Bernardes, Benjamin Krämer, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Elena De Domenico, Christian Siever, Michael Kraut, Milind Desai, Bruno Monnet, Maria Saridaki, Charles Martin Siegel, Anna Drews, Melanie Nuesch-Germano, Heidi Theis, Jan Heyckendorf, Stefan Schreiber, Sarah Kim-Hellmuth, null null, Jacob Nattermann, Dirk Skowasch, Ingo Kurth, Andreas Keller, Robert Bals, Peter Nürnberg, Olaf Rieß, Philip Rosenstiel, Mihai M Netea, Fabian Joachim Theis, Sach Mukherjee, Michael Backes, Anna C Aschenbrenner, Thomas Ulas, null null, Monique M B Breteler, Evangelos J Giamarellos-Bourboulis, Matthijs Kox, Matthias Becker, Sorin Cheran, Michael S Woodacre, Eng Lim Goh, Joachim L Schultze
Swarm Learning for decentralized and confidential clinical machine learning. Nature 594 (7862) (2021)
David W Craig, Elizabeth Hutchins, Ivo Violich, Eric Alsop, Raphael J Gibbs, Shawn Levy, Madison Robison, Nripesh Prasad, Tatiana Foroud, Karen L Crawford, Arthur W Toga, Timothy G Whitsett, Seungchan Kim, Kimberley J Billingsley, Alyssa Reimer, Samantha J Hutten, Mark Frasier, Fabian Kern, Tobias Fehlmann, Andreas Keller, Mark R Cookson, Kendall R Van Keuren-Jensen, null null
RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's disease. Nature aging 1 (8) (2021)
Tobias Fehlmann, Fabian Kern, Pascal Hirsch, Robin Steinhaus, Dominik Seelow, Andreas Keller
Aviator: a web service for monitoring the availability of web services. Nucleic acids research 49 (W1) (2021)
David W Craig, Elizabeth Hutchins, Ivo Violich, Eric Alsop, Raphael J Gibbs, Shawn Levy, Madison Robison, Nripesh Prasad, Tatiana Foroud, Karen L Crawford, Arthur W Toga, Timothy G Whitsett, Seungchan Kim, Kimberley J Billingsley, Alyssa Reimer, Samantha J Hutten, Mark Frasier, Fabian Kern, Tobias Fehlmann, Andreas Keller, Mark R Cookson, Kendall R Van Keuren-Jensen, null null
RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's disease. Nature aging 1 (8) (2021)
Andrew C Yang, Fabian Kern, Patricia M Losada, Maayan R Agam, Christina A Maat, Georges P Schmartz, Tobias Fehlmann, Julian A Stein, Nicholas Schaum, Davis P Lee, Kruti Calcuttawala, Ryan T Vest, Daniela Berdnik, Nannan Lu, Oliver Hahn, David Gate, M Windy McNerney, Divya Channappa, Inma Cobos, Nicole Ludwig, Walter J Schulz-Schaeffer, Andreas Keller, Tony Wyss-Coray
Dysregulation of brain and choroid plexus cell types in severe COVID-19. Nature 595 (7868) (2021)
Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
miRTargetLink 2.0-interactive miRNA target gene and target pathway networks. Nucleic acids research 49 (W1) (2021)
Tobias Fehlmann, Fabian Kern, Omar Laham, Christina Backes, Jeffrey Solomon, Pascal Hirsch, Carsten Volz, Rolf Müller, Andreas Keller
miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale. Nucleic acids research 49 (W1) (2021)
Andreas Keller, Laura Gröger, Thomas Tschernig, Jeffrey Solomon, Omar Laham, Nicholas Schaum, Viktoria Wagner, Fabian Kern, Georges Pierre Schmartz, Yongping Li, Adam Borcherding, Carola Meier, Tony Wyss-Coray, Eckart Meese, Tobias Fehlmann, Nicole Ludwig
miRNATissueAtlas2: an update to the human miRNA tissue atlas. Nucleic acids research (2021)
Georges P Schmartz, Anna Hartung, Pascal Hirsch, Fabian Kern, Tobias Fehlmann, Rolf Müller, Andreas Keller
PLSDB: advancing a comprehensive database of bacterial plasmids. Nucleic acids research (2021)
Nadja Grammes, Dominic Millenaar, Tobias Fehlmann, Fabian Kern, Michael Böhm, Felix Mahfoud, Andreas Keller
Research Output and International Cooperation Among Countries During the COVID-19 Pandemic: Scientometric Analysis. Journal of medical Internet research 22 (12) (2020)
Jeffrey Solomon, Fabian Kern, Tobias Fehlmann, Eckart Meese, Andreas Keller
HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data. Biomolecules 10 (11) (2020)
Andreas Keller, Tobias Fehlmann, Christina Backes, Fabian Kern, Randi Elin Gislefoss, Hilde Langseth, Trine B Haugen, Nicole Ludwig, Eckart Meese
Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis. RNA biology 17 (10) (2020)
Nicole Ludwig, Anne Hecksteden, Mustafa Kahraman, Tobias Fehlmann, Thomas Laufer, Fabian Kern, Tim Meyer, Eckart Meese, Andreas Keller, Christina Backes
Spring is in the air: seasonal profiles indicate vernal change of miRNA activity. RNA biology 16 (8) (2019)
Mustafa Kahraman, Anne Röske, Thomas Laufer, Tobias Fehlmann, Christina Backes, Fabian Kern, Jochen Kohlhaas, Hannah Schrörs, Anna Saiz, Cassandra Zabler, Nicole Ludwig, Peter A Fasching, Reiner Strick, Matthias Rübner, Matthias W Beckmann, Eckart Meese, Andreas Keller, Michael G Schrauder
MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer. Scientific reports 8 (1) (2018)
Martin Hart, Fabian Kern, Christina Backes, Stefanie Rheinheimer, Tobias Fehlmann, Andreas Keller, Eckart Meese
The deterministic role of 5-mers in microRNA-gene targeting. RNA biology 15 (6) (2018)
Tobias Fehlmann, Thomas Laufer, Christina Backes, Mustafa Kahramann, Julia Alles, Ulrike Fischer, Marie Minet, Nicole Ludwig, Fabian Kern, Tim Kehl, Valentina Galata, Aneta Düsterloh, Hannah Schrörs, Jochen Kohlhaas, Robert Bals, Hanno Huwer, Lars Geffers, Rejko Krüger, Rudi Balling, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
Large-scale validation of miRNAs by disease association, evolutionary conservation and pathway activity. RNA biology 16 (1) (2018)