Tobias Fehlmann (Tobias Fehlman)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 39

Top Topics

Machine Learning

Dendritic Cells

Top Venues

Nucleic acids research

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research 52 (W1) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research 52 (W1) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research (2024)
Pedro Guimarães, Andreas Keller, Michael Böhm, Lucas Lauder, Tobias Fehlmann, Luis M Ruilope, Ernest Vinyoles, Manuel Gorostidi, Julián Segura, Luis M Ruilope, Natalie Staplin, Bryan Williams, Alejandro de la Sierra, Felix Mahfoud
Artificial Intelligence-Derived Risk Prediction: A Novel Risk Calculator Using Office and Ambulatory Blood Pressure. Hypertension (Dallas, Tex. : 1979) (2024)
Viktoria Wagner, Fabian Kern, Oliver Hahn, Nicholas Schaum, Nicole Ludwig, Tobias Fehlmann, Annika Engel, Dominic Henn, Shusruto Rishik, Alina Isakova, Michelle Tan, Rene Sit, Norma Neff, Martin Hart, Eckart Meese, Steve Quake, Tony Wyss-Coray, Andreas Keller
Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues. Nature biotechnology (2023)
Dominic Henn, Dehua Zhao, Dharshan Sivaraj, Artem Trotsyuk, Clark Andrew Bonham, Katharina S Fischer, Tim Kehl, Tobias Fehlmann, Autumn H Greco, Hudson C Kussie, Sylvia E Moortgat Illouz, Jagannath Padmanabhan, Janos A Barrera, Ulrich Kneser, Hans-Peter Lenhof, Michael Januszyk, Benjamin Levi, Andreas Keller, Michael T Longaker, Kellen Chen, Lei S Qi, Geoffrey C Gurtner
Cas9-mediated knockout of Ndrg2 enhances the regenerative potential of dendritic cells for wound healing. Nature communications 14 (1) (2023)
Viktoria Wagner, Fabian Kern, Oliver Hahn, Nicholas Schaum, Nicole Ludwig, Tobias Fehlmann, Annika Engel, Dominic Henn, Shusruto Rishik, Alina Isakova, Michelle Tan, Rene Sit, Norma Neff, Martin Hart, Eckart Meese, Steve Quake, Tony Wyss-Coray, Andreas Keller
Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues. Nature biotechnology (2023)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges P Schmartz, Fabian Kern, Tobias Fehlmann, Andreas Keller
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations. Nucleic acids research (2023)
Fabian Kern, Thomas Kuhn, Nicole Ludwig, Martin Simon, Laura Gröger, Natalie Fabis, Ernesto Aparicio-Puerta, Abdulrahman Salhab, Tobias Fehlmann, Oliver Hahn, Annika Engel, Viktoria Wagner, Marcus A Koch, Katarzyna Winek, Hermona Soreq, Irina Nazarenko, Gregor Fuhrmann, Tony Wyss-Coray, Eckart Meese, Verena Keller, Matthias W Laschke, Andreas Keller
Ageing-associated small RNA cargo of extracellular vesicles. RNA biology 20 (1) (2023)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges P Schmartz, Tobias Fehlmann, Verena Keller, Annika Engel, Fabian Kern, Michael Hackenberg, Andreas Keller
isomiRdb: microRNA expression at isoform resolution. Nucleic acids research (2022)
Róbert Pálovics, Andreas Keller, Nicholas Schaum, Weilun Tan, Tobias Fehlmann, Michael Borja, Fabian Kern, Liana Bonanno, Kruti Calcuttawala, James Webber, Aaron McGeever, null null, Jian Luo, Angela Oliveira Pisco, Jim Karkanias, Norma F Neff, Spyros Darmanis, Stephen R Quake, Tony Wyss-Coray
Molecular hallmarks of heterochronic parabiosis at single-cell resolution. Nature 603 (7900) (2022)
Georges P Schmartz, Pascal Hirsch, Jérémy Amand, Jan Dastbaz, Tobias Fehlmann, Fabian Kern, Rolf Müller, Andreas Keller
BusyBee Web: towards comprehensive and differential composition-based metagenomic binning. Nucleic acids research (2022)
Kellen Chen, Dominic Henn, Michael Januszyk, Janos A Barrera, Chikage Noishiki, Clark A Bonham, Michelle F Griffin, Ruth Tevlin, Theresa Carlomagno, Tara Shannon, Tobias Fehlmann, Artem A Trotsyuk, Jagannath Padmanabhan, Dharshan Sivaraj, David P Perrault, Alsu I Zamaleeva, Chyna J Mays, Autumn H Greco, Sun Hyung Kwon, Melissa C Leeolou, Savana L Huskins, Sydney R Steele, Katharina S Fischer, Hudson C Kussie, Smiti Mittal, Alana M Mermin-Bunnell, Nestor M Diaz Deleon, Christopher Lavin, Andreas Keller, Michael T Longaker, Geoffrey C Gurtner
Disrupting mechanotransduction decreases fibrosis and contracture in split-thickness skin grafting. Science translational medicine 14 (645) (2022)
Stefanie Warnat-Herresthal, Hartmut Schultze, Krishnaprasad Lingadahalli Shastry, Sathyanarayanan Manamohan, Saikat Mukherjee, Vishesh Garg, Ravi Sarveswara, Kristian Händler, Peter Pickkers, Nasir Ahmad Aziz, Sofia Ktena, Florian Tran, Michael Bitzer, Stephan Ossowski, Nicolas Casadei, Christian Herr, Daniel Petersheim, Uta Behrends, Fabian Kern, Tobias Fehlmann, Philipp Schommers, Clara Lehmann, Max Augustin, Jan Rybniker, Janine Altmüller, Neha Mishra, Joana P Bernardes, Benjamin Krämer, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Elena De Domenico, Christian Siever, Michael Kraut, Milind Desai, Bruno Monnet, Maria Saridaki, Charles Martin Siegel, Anna Drews, Melanie Nuesch-Germano, Heidi Theis, Jan Heyckendorf, Stefan Schreiber, Sarah Kim-Hellmuth, null null, Jacob Nattermann, Dirk Skowasch, Ingo Kurth, Andreas Keller, Robert Bals, Peter Nürnberg, Olaf Rieß, Philip Rosenstiel, Mihai M Netea, Fabian Joachim Theis, Sach Mukherjee, Michael Backes, Anna C Aschenbrenner, Thomas Ulas, null null, Monique M B Breteler, Evangelos J Giamarellos-Bourboulis, Matthijs Kox, Matthias Becker, Sorin Cheran, Michael S Woodacre, Eng Lim Goh, Joachim L Schultze
Swarm Learning for decentralized and confidential clinical machine learning. Nature 594 (7862) (2021)
Fabian Kern, Tobias Fehlmann, Ivo Violich, Eric Alsop, Elizabeth Hutchins, Mustafa Kahraman, Nadja L Grammes, Pedro Guimarães, Christina Backes, Kathleen L Poston, Kimberley J Billingsley, Rudi Balling, Lars Geffers, Rejko Krüger, Douglas Galasko, Brit Mollenhauer, Eckart Meese, Tony Wyss-Coray, David W Craig, Kendall Van Keuren-Jensen, Andreas Keller
Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson's disease progression. Nature aging 1 (3) (2021)
Sarah M Hücker, Tobias Fehlmann, Christian Werno, Kathrin Weidele, Florian Lüke, Anke Schlenska-Lange, Christoph A Klein, Andreas Keller, Stefan Kirsch
Single-cell microRNA sequencing method comparison and application to cell lines and circulating lung tumor cells. Nature communications 12 (1) (2021)
David W Craig, Elizabeth Hutchins, Ivo Violich, Eric Alsop, Raphael J Gibbs, Shawn Levy, Madison Robison, Nripesh Prasad, Tatiana Foroud, Karen L Crawford, Arthur W Toga, Timothy G Whitsett, Seungchan Kim, Kimberley J Billingsley, Alyssa Reimer, Samantha J Hutten, Mark Frasier, Fabian Kern, Tobias Fehlmann, Andreas Keller, Mark R Cookson, Kendall R Van Keuren-Jensen, null null
RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's disease. Nature aging 1 (8) (2021)
Tobias Fehlmann, Fabian Kern, Pascal Hirsch, Robin Steinhaus, Dominik Seelow, Andreas Keller
Aviator: a web service for monitoring the availability of web services. Nucleic acids research 49 (W1) (2021)
David W Craig, Elizabeth Hutchins, Ivo Violich, Eric Alsop, Raphael J Gibbs, Shawn Levy, Madison Robison, Nripesh Prasad, Tatiana Foroud, Karen L Crawford, Arthur W Toga, Timothy G Whitsett, Seungchan Kim, Kimberley J Billingsley, Alyssa Reimer, Samantha J Hutten, Mark Frasier, Fabian Kern, Tobias Fehlmann, Andreas Keller, Mark R Cookson, Kendall R Van Keuren-Jensen, null null
RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's disease. Nature aging 1 (8) (2021)
Andrew C Yang, Fabian Kern, Patricia M Losada, Maayan R Agam, Christina A Maat, Georges P Schmartz, Tobias Fehlmann, Julian A Stein, Nicholas Schaum, Davis P Lee, Kruti Calcuttawala, Ryan T Vest, Daniela Berdnik, Nannan Lu, Oliver Hahn, David Gate, M Windy McNerney, Divya Channappa, Inma Cobos, Nicole Ludwig, Walter J Schulz-Schaeffer, Andreas Keller, Tony Wyss-Coray
Dysregulation of brain and choroid plexus cell types in severe COVID-19. Nature 595 (7868) (2021)
Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
miRTargetLink 2.0-interactive miRNA target gene and target pathway networks. Nucleic acids research 49 (W1) (2021)
Kellen Chen, Sun Hyung Kwon, Dominic Henn, Britta A Kuehlmann, Ruth Tevlin, Clark A Bonham, Michelle Griffin, Artem A Trotsyuk, Mimi R Borrelli, Chikage Noishiki, Jagannath Padmanabhan, Janos A Barrera, Zeshaan N Maan, Teruyuki Dohi, Chyna J Mays, Autumn H Greco, Dharshan Sivaraj, John Q Lin, Tobias Fehlmann, Alana M Mermin-Bunnell, Smiti Mittal, Michael S Hu, Alsu I Zamaleeva, Andreas Keller, Jayakumar Rajadas, Michael T Longaker, Michael Januszyk, Geoffrey C Gurtner
Disrupting biological sensors of force promotes tissue regeneration in large organisms. Nature communications 12 (1) (2021)
Fabian Kern, Tobias Fehlmann, Ivo Violich, Eric Alsop, Elizabeth Hutchins, Mustafa Kahraman, Nadja L Grammes, Pedro Guimarães, Christina Backes, Kathleen L Poston, Kimberley J Billingsley, Rudi Balling, Lars Geffers, Rejko Krüger, Douglas Galasko, Brit Mollenhauer, Eckart Meese, Tony Wyss-Coray, David W Craig, Kendall Van Keuren-Jensen, Andreas Keller
Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson's disease progression. Nature aging 1 (3) (2021)
Tobias Fehlmann, Fabian Kern, Omar Laham, Christina Backes, Jeffrey Solomon, Pascal Hirsch, Carsten Volz, Rolf Müller, Andreas Keller
miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale. Nucleic acids research 49 (W1) (2021)
David Gate, Emma Tapp, Olivia Leventhal, Marian Shahid-Besanti, Tim J Nonninger, Andrew C Yang, Katharina Strempfl, Michael Stefan Unger, Tobias Fehlmann, Hamilton Se-Hwee Oh, Divya Channappa, Victor W Henderson, Andreas Keller, Ludwig Aigner, Douglas R Galasko, Mark M Davis, Kathleen L Poston, Tony Wyss-Coray
CD4+ T cells contribute to neurodegeneration in Lewy body dementia. Science (New York, N.Y.) 374 (6569) (2021)
Andreas Keller, Laura Gröger, Thomas Tschernig, Jeffrey Solomon, Omar Laham, Nicholas Schaum, Viktoria Wagner, Fabian Kern, Georges Pierre Schmartz, Yongping Li, Adam Borcherding, Carola Meier, Tony Wyss-Coray, Eckart Meese, Tobias Fehlmann, Nicole Ludwig
miRNATissueAtlas2: an update to the human miRNA tissue atlas. Nucleic acids research (2021)
Dominic Henn, Kellen Chen, Tobias Fehlmann, Artem A Trotsyuk, Dharshan Sivaraj, Zeshaan N Maan, Clark A Bonham, Janos A Barrera, Chyna J Mays, Autumn H Greco, Sylvia E Moortgat Illouz, John Qian Lin, Sydney R Steele, Deshka S Foster, Jagannath Padmanabhan, Arash Momeni, Dung Nguyen, Derrick C Wan, Ulrich Kneser, Michael Januszyk, Andreas Keller, Michael T Longaker, Geoffrey C Gurtner
Xenogeneic skin transplantation promotes angiogenesis and tissue regeneration through activated Trem2+ macrophages. Science advances 7 (49) (2021)
Georges P Schmartz, Anna Hartung, Pascal Hirsch, Fabian Kern, Tobias Fehlmann, Rolf Müller, Andreas Keller
PLSDB: advancing a comprehensive database of bacterial plasmids. Nucleic acids research (2021)
Nadja Grammes, Dominic Millenaar, Tobias Fehlmann, Fabian Kern, Michael Böhm, Felix Mahfoud, Andreas Keller
Research Output and International Cooperation Among Countries During the COVID-19 Pandemic: Scientometric Analysis. Journal of medical Internet research 22 (12) (2020)
Jeffrey Solomon, Fabian Kern, Tobias Fehlmann, Eckart Meese, Andreas Keller
HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data. Biomolecules 10 (11) (2020)
Andreas Keller, Tobias Fehlmann, Christina Backes, Fabian Kern, Randi Elin Gislefoss, Hilde Langseth, Trine B Haugen, Nicole Ludwig, Eckart Meese
Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis. RNA biology 17 (10) (2020)
Tobias Fehlmann, Daniela Berdnik, Nicholas Schaum, Oliver Hahn, Mustafa Kahraman, Yongping Li, Nadja Grammes, Lars Geffers, Christina Backes, Rudi Balling, Fabian Kern, Rejko Krüger, Frank Lammert, Nicole Ludwig, Benjamin Meder, Bastian Fromm, Walter Maetzler, Daniela Berg, Kathrin Brockmann, Christian Deuschle, Anna-Katharina von Thaler, Gerhard W Eschweiler, Sofiya Milman, Nir Barziliai, Matthias Christian Reichert, Tony Wyss-Coray, Eckart Meese, Andreas Keller
Common diseases alter the physiological age-related blood microRNA profile. Nature communications 11 (1) (2020)
Alina Isakova, Tobias Fehlmann, Andreas Keller, Stephen R Quake
A mouse tissue atlas of small noncoding RNA. Proceedings of the National Academy of Sciences of the United States of America 117 (41) (2020)
Mustafa Kahraman, Anne Röske, Thomas Laufer, Tobias Fehlmann, Christina Backes, Fabian Kern, Jochen Kohlhaas, Hannah Schrörs, Anna Saiz, Cassandra Zabler, Nicole Ludwig, Peter A Fasching, Reiner Strick, Matthias Rübner, Matthias W Beckmann, Eckart Meese, Andreas Keller, Michael G Schrauder
MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer. Scientific reports 8 (1) (2018)
Masood Abu-Halima, Sebastian Häusler, Christina Backes, Tobias Fehlmann, Claudia Staib, Sigrun Nestel, Irina Nazarenko, Eckart Meese, Andreas Keller
Micro-ribonucleic acids and extracellular vesicles repertoire in the spent culture media is altered in women undergoing In Vitro Fertilization. Scientific reports 7 (1) (2017)
Nicole Ludwig, Meike Becker, Timo Schumann, Timo Speer, Tobias Fehlmann, Andreas Keller, Eckart Meese
Bias in recent miRBase annotations potentially associated with RNA quality issues. Scientific reports 7 (1) (2017)