Andreas Keller

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 78

Top Topics

High Resolution Mass Spectrometry

Machine Learning

Gene Expression

Top Venues

Nucleic acids research

Scientific reports

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine (2024)
Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine 56 (4) (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research 52 (W1) (2024)
Annika Engel, Nicole Ludwig, Friederike Grandke, Viktoria Wagner, Fabian Kern, Tobias Fehlmann, Georges P Schmartz, Ernesto Aparicio-Puerta, Dominic Henn, Barbara Walch-Rückheim, Matthias Hannig, Stefan Rupf, Eckart Meese, Matthias W Laschke, Andreas Keller
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes. RNA biology 21 (1) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research 52 (W1) (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Annika Engel, Shusruto Rishik, Pascal Hirsch, Verena Keller, Tobias Fehlmann, Fabian Kern, Andreas Keller
SingmiR: a single-cell miRNA alignment and analysis tool. Nucleic acids research (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine 56 (4) (2024)
Pascal Hirsch, Leidy-Alejandra G Molano, Annika Engel, Jens Zentgraf, Sven Rahmann, Matthias Hannig, Rolf Müller, Fabian Kern, Andreas Keller, Georges P Schmartz
Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics. Nucleic acids research 52 (W1) (2024)
Pedro Guimarães, Andreas Keller, Michael Böhm, Lucas Lauder, Tobias Fehlmann, Luis M Ruilope, Ernest Vinyoles, Manuel Gorostidi, Julián Segura, Luis M Ruilope, Natalie Staplin, Bryan Williams, Alejandro de la Sierra, Felix Mahfoud
Artificial Intelligence-Derived Risk Prediction: A Novel Risk Calculator Using Office and Ambulatory Blood Pressure. Hypertension (Dallas, Tex. : 1979) (2024)
Tal Iram, Miguel A Garcia, Jérémy Amand, Achint Kaur, Micaiah Atkins, Manasi Iyer, Mable Lam, Nicholas Ambiel, Danielle M Jorgens, Andreas Keller, Tony Wyss-Coray, Fabian Kern, J Bradley Zuchero
SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Pascal Hirsch, Leidy-Alejandra G Molano, Annika Engel, Jens Zentgraf, Sven Rahmann, Matthias Hannig, Rolf Müller, Fabian Kern, Andreas Keller, Georges P Schmartz
Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics. Nucleic acids research (2024)
Pascal Hirsch, Leidy-Alejandra G Molano, Annika Engel, Jens Zentgraf, Sven Rahmann, Matthias Hannig, Rolf Müller, Fabian Kern, Andreas Keller, Georges P Schmartz
Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics. Nucleic acids research 52 (W1) (2024)
Martin Hart, Fabian Kern, Claudia Fecher-Trost, Lena Krammes, Ernesto Aparicio, Annika Engel, Pascal Hirsch, Viktoria Wagner, Verena Keller, Georges Pierre Schmartz, Stefanie Rheinheimer, Caroline Diener, Ulrike Fischer, Jens Mayer, Markus R Meyer, Veit Flockerzi, Andreas Keller, Eckart Meese
Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease. Experimental & molecular medicine 56 (4) (2024)
Pascal Hirsch, Azat M Tagirdzhanov, Aleksandra Kushnareva, Ilia Olkhovskii, Simon Graf, Georges P Schmartz, Julian D Hegemann, Kenan A J Bozhüyük, Daniel Krug, Andreas Keller, Alexey Gurevich
ABC-HuMi: the Atlas of Biosynthetic Gene Clusters in the Human Microbiome. Nucleic acids research (2023)
Jacqueline Rehner, Georges P Schmartz, Tabea Kramer, Verena Keller, Andreas Keller, Sören Leif Becker
The Effect of a Planetary Health Diet on the Human Gut Microbiome: A Descriptive Analysis. Nutrients 15 (8) (2023)
Jacqueline Rehner, Georges P Schmartz, Tabea Kramer, Verena Keller, Andreas Keller, Sören Leif Becker
The Effect of a Planetary Health Diet on the Human Gut Microbiome: A Descriptive Analysis. Nutrients 15 (8) (2023)
Viktoria Wagner, Fabian Kern, Oliver Hahn, Nicholas Schaum, Nicole Ludwig, Tobias Fehlmann, Annika Engel, Dominic Henn, Shusruto Rishik, Alina Isakova, Michelle Tan, Rene Sit, Norma Neff, Martin Hart, Eckart Meese, Steve Quake, Tony Wyss-Coray, Andreas Keller
Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues. Nature biotechnology (2023)
Caroline Diener, Martin Hart, Tim Kehl, Anouck Becker-Dorison, Tanja Tänzer, David Schub, Lena Krammes, Martina Sester, Andreas Keller, Marcus Unger, Barbara Walch-Rückheim, Hans-Peter Lenhof, Eckart Meese
Time-resolved RNA signatures of CD4+ T cells in Parkinson's disease. Cell death discovery 9 (1) (2023)
Dominic Henn, Dehua Zhao, Dharshan Sivaraj, Artem Trotsyuk, Clark Andrew Bonham, Katharina S Fischer, Tim Kehl, Tobias Fehlmann, Autumn H Greco, Hudson C Kussie, Sylvia E Moortgat Illouz, Jagannath Padmanabhan, Janos A Barrera, Ulrich Kneser, Hans-Peter Lenhof, Michael Januszyk, Benjamin Levi, Andreas Keller, Michael T Longaker, Kellen Chen, Lei S Qi, Geoffrey C Gurtner
Cas9-mediated knockout of Ndrg2 enhances the regenerative potential of dendritic cells for wound healing. Nature communications 14 (1) (2023)
Jacqueline Rehner, Georges P Schmartz, Tabea Kramer, Verena Keller, Andreas Keller, Sören Leif Becker
The Effect of a Planetary Health Diet on the Human Gut Microbiome: A Descriptive Analysis. Nutrients 15 (8) (2023)
Viktoria Wagner, Fabian Kern, Oliver Hahn, Nicholas Schaum, Nicole Ludwig, Tobias Fehlmann, Annika Engel, Dominic Henn, Shusruto Rishik, Alina Isakova, Michelle Tan, Rene Sit, Norma Neff, Martin Hart, Eckart Meese, Steve Quake, Tony Wyss-Coray, Andreas Keller
Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues. Nature biotechnology (2023)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges P Schmartz, Fabian Kern, Tobias Fehlmann, Andreas Keller
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations. Nucleic acids research (2023)
Fabian Kern, Thomas Kuhn, Nicole Ludwig, Martin Simon, Laura Gröger, Natalie Fabis, Ernesto Aparicio-Puerta, Abdulrahman Salhab, Tobias Fehlmann, Oliver Hahn, Annika Engel, Viktoria Wagner, Marcus A Koch, Katarzyna Winek, Hermona Soreq, Irina Nazarenko, Gregor Fuhrmann, Tony Wyss-Coray, Eckart Meese, Verena Keller, Matthias W Laschke, Andreas Keller
Ageing-associated small RNA cargo of extracellular vesicles. RNA biology 20 (1) (2023)
Jacqueline Rehner, Georges P Schmartz, Tabea Kramer, Verena Keller, Andreas Keller, Sören Leif Becker
The Effect of a Planetary Health Diet on the Human Gut Microbiome: A Descriptive Analysis. Nutrients 15 (8) (2023)
Caroline Diener, Martin Hart, Tim Kehl, Anouck Becker-Dorison, Tanja Tänzer, David Schub, Lena Krammes, Martina Sester, Andreas Keller, Marcus Unger, Barbara Walch-Rückheim, Hans-Peter Lenhof, Eckart Meese
Time-resolved RNA signatures of CD4+ T cells in Parkinson's disease. Cell death discovery 9 (1) (2023)
Matthias Flotho, Jérémy Amand, Pascal Hirsch, Friederike Grandke, Tony Wyss-Coray, Andreas Keller, Fabian Kern
ZEBRA: a hierarchically integrated gene expression atlas of the murine and human brain at single-cell resolution. Nucleic acids research (2023)
Caroline Diener, Andreas Keller, Eckart Meese
The miRNA-target interactions: An underestimated intricacy. Nucleic acids research (2023)
Caroline Diener, Martin Hart, Tim Kehl, Anouck Becker-Dorison, Tanja Tänzer, David Schub, Lena Krammes, Martina Sester, Andreas Keller, Marcus Unger, Barbara Walch-Rückheim, Hans-Peter Lenhof, Eckart Meese
Time-resolved RNA signatures of CD4+ T cells in Parkinson's disease. Cell death discovery 9 (1) (2023)
Marion Müller, Rose Eghbalian, Jes-Niels Boeckel, Karen S Frese, Jan Haas, Elham Kayvanpour, Farbod Sedaghat-Hamedani, Maximilian K Lackner, Oguz F Tugrul, Thomas Ruppert, Rewati Tappu, Diana Martins Bordalo, Jasmin Marga Kneuer, Annika Piekarek, Sabine Herch, Sarah Schudy, Andreas Keller, Nadja Grammes, Cornelius Bischof, Anna Klinke, Margarida Cardoso-Moreira, Henrick Kaessmann, Hugo A Katus, Norbert Frey, Lars M Steinmetz, Benjamin Meder
NIMA-related kinase 9 regulates the phosphorylation of the essential myosin light chain in the heart. Nature communications 13 (1) (2022)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges P Schmartz, Tobias Fehlmann, Verena Keller, Annika Engel, Fabian Kern, Michael Hackenberg, Andreas Keller
isomiRdb: microRNA expression at isoform resolution. Nucleic acids research (2022)
Andrew C Yang, Ryan T Vest, Fabian Kern, Davis P Lee, Maayan Agam, Christina A Maat, Patricia M Losada, Michelle B Chen, Nicholas Schaum, Nathalie Khoury, Angus Toland, Kruti Calcuttawala, Heather Shin, Róbert Pálovics, Andrew Shin, Elizabeth Y Wang, Jian Luo, David Gate, Walter J Schulz-Schaeffer, Pauline Chu, Julie A Siegenthaler, M Windy McNerney, Andreas Keller, Tony Wyss-Coray
A human brain vascular atlas reveals diverse mediators of Alzheimer's risk. Nature 603 (7903) (2022)
Anne Hecksteden, Georges Pierre Schmartz, Yanni Egyptien, Karen Aus der Fünten, Andreas Keller, Tim Meyer
Forecasting football injuries by combining screening, monitoring and machine learning. Science & medicine in football (2022)
Simonas Juzenas, Matthias Hübenthal, Carl Mårten Lindqvist, Robert Kruse, Tim Alexander Steiert, Frauke Degenhardt, Dominik Schulte, Susanna Nikolaus, Sebastian Zeissig, Daniel Bergemalm, Sven Almer, Henrik Hjortswang, Francesca Bresso, null null, Nina Strüning, Juozas Kupcinskas, Andreas Keller, Wolfgang Lieb, Philip Rosenstiel, Stefan Schreiber, Mauro D'Amato, Jonas Halfvarson, Georg Hemmrich-Stanisak, Andre Franke
Detailed Transcriptional Landscape of Peripheral Blood Points to Increased Neutrophil Activation in Treatment-Naïve Inflammatory Bowel Disease. Journal of Crohn's & colitis 16 (7) (2022)
Róbert Pálovics, Andreas Keller, Nicholas Schaum, Weilun Tan, Tobias Fehlmann, Michael Borja, Fabian Kern, Liana Bonanno, Kruti Calcuttawala, James Webber, Aaron McGeever, null null, Jian Luo, Angela Oliveira Pisco, Jim Karkanias, Norma F Neff, Spyros Darmanis, Stephen R Quake, Tony Wyss-Coray
Molecular hallmarks of heterochronic parabiosis at single-cell resolution. Nature 603 (7900) (2022)
Ernesto Aparicio-Puerta, Cristina Gómez-Martin, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrian Garcia-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. Nucleic acids research (2022)
Georges P Schmartz, Pascal Hirsch, Jérémy Amand, Jan Dastbaz, Tobias Fehlmann, Fabian Kern, Rolf Müller, Andreas Keller
BusyBee Web: towards comprehensive and differential composition-based metagenomic binning. Nucleic acids research (2022)
Marie Minet, Masood Abu-Halima, Yiqing Du, Julia Doerr, Christina Isted, Nicole Ludwig, Andreas Keller, Eckart Meese, Ulrike Fischer
A Temporary Pause in the Replication Licensing Restriction Leads to Rereplication during Early Human Cell Differentiation. Cells 11 (6) (2022)
Marcus Miethke, Marco Pieroni, Tilmann Weber, Mark Brönstrup, Peter Hammann, Ludovic Halby, Paola B Arimondo, Philippe Glaser, Bertrand Aigle, Helge B Bode, Rui Moreira, Yanyan Li, Andriy Luzhetskyy, Marnix H Medema, Jean-Luc Pernodet, Marc Stadler, José Rubén Tormo, Olga Genilloud, Andrew W Truman, Kira J Weissman, Eriko Takano, Stefano Sabatini, Evi Stegmann, Heike Brötz-Oesterhelt, Wolfgang Wohlleben, Myriam Seemann, Martin Empting, Anna K H Hirsch, Brigitta Loretz, Claus-Michael Lehr, Alexander Titz, Jennifer Herrmann, Timo Jaeger, Silke Alt, Thomas Hesterkamp, Mathias Winterhalter, Andrea Schiefer, Kenneth M Pfarr, Achim Hoerauf, Heather Graz, Michael Graz, Mika Lindvall, Savithri Ramurthy, Anders Karlén, Maarten van Dongen, Hrvoje Petkovic, Andreas Keller, Frédéric Peyrane, Stefano Donadio, Laurent Fraisse, Laura J V Piddock, Ian H Gilbert, Heinz E Moser, Daniel Krug
Towards the sustainable discovery and development of new antibiotics. Nature reviews. Chemistry 5 (10) (2021)
Stefanie Warnat-Herresthal, Hartmut Schultze, Krishnaprasad Lingadahalli Shastry, Sathyanarayanan Manamohan, Saikat Mukherjee, Vishesh Garg, Ravi Sarveswara, Kristian Händler, Peter Pickkers, Nasir Ahmad Aziz, Sofia Ktena, Florian Tran, Michael Bitzer, Stephan Ossowski, Nicolas Casadei, Christian Herr, Daniel Petersheim, Uta Behrends, Fabian Kern, Tobias Fehlmann, Philipp Schommers, Clara Lehmann, Max Augustin, Jan Rybniker, Janine Altmüller, Neha Mishra, Joana P Bernardes, Benjamin Krämer, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Elena De Domenico, Christian Siever, Michael Kraut, Milind Desai, Bruno Monnet, Maria Saridaki, Charles Martin Siegel, Anna Drews, Melanie Nuesch-Germano, Heidi Theis, Jan Heyckendorf, Stefan Schreiber, Sarah Kim-Hellmuth, null null, Jacob Nattermann, Dirk Skowasch, Ingo Kurth, Andreas Keller, Robert Bals, Peter Nürnberg, Olaf Rieß, Philip Rosenstiel, Mihai M Netea, Fabian Joachim Theis, Sach Mukherjee, Michael Backes, Anna C Aschenbrenner, Thomas Ulas, null null, Monique M B Breteler, Evangelos J Giamarellos-Bourboulis, Matthijs Kox, Matthias Becker, Sorin Cheran, Michael S Woodacre, Eng Lim Goh, Joachim L Schultze
Swarm Learning for decentralized and confidential clinical machine learning. Nature 594 (7862) (2021)
Fabian Kern, Tobias Fehlmann, Ivo Violich, Eric Alsop, Elizabeth Hutchins, Mustafa Kahraman, Nadja L Grammes, Pedro Guimarães, Christina Backes, Kathleen L Poston, Kimberley J Billingsley, Rudi Balling, Lars Geffers, Rejko Krüger, Douglas Galasko, Brit Mollenhauer, Eckart Meese, Tony Wyss-Coray, David W Craig, Kendall Van Keuren-Jensen, Andreas Keller
Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson's disease progression. Nature aging 1 (3) (2021)
Sarah M Hücker, Tobias Fehlmann, Christian Werno, Kathrin Weidele, Florian Lüke, Anke Schlenska-Lange, Christoph A Klein, Andreas Keller, Stefan Kirsch
Single-cell microRNA sequencing method comparison and application to cell lines and circulating lung tumor cells. Nature communications 12 (1) (2021)
David W Craig, Elizabeth Hutchins, Ivo Violich, Eric Alsop, Raphael J Gibbs, Shawn Levy, Madison Robison, Nripesh Prasad, Tatiana Foroud, Karen L Crawford, Arthur W Toga, Timothy G Whitsett, Seungchan Kim, Kimberley J Billingsley, Alyssa Reimer, Samantha J Hutten, Mark Frasier, Fabian Kern, Tobias Fehlmann, Andreas Keller, Mark R Cookson, Kendall R Van Keuren-Jensen, null null
RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's disease. Nature aging 1 (8) (2021)
Tobias Fehlmann, Fabian Kern, Pascal Hirsch, Robin Steinhaus, Dominik Seelow, Andreas Keller
Aviator: a web service for monitoring the availability of web services. Nucleic acids research 49 (W1) (2021)
David W Craig, Elizabeth Hutchins, Ivo Violich, Eric Alsop, Raphael J Gibbs, Shawn Levy, Madison Robison, Nripesh Prasad, Tatiana Foroud, Karen L Crawford, Arthur W Toga, Timothy G Whitsett, Seungchan Kim, Kimberley J Billingsley, Alyssa Reimer, Samantha J Hutten, Mark Frasier, Fabian Kern, Tobias Fehlmann, Andreas Keller, Mark R Cookson, Kendall R Van Keuren-Jensen, null null
RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's disease. Nature aging 1 (8) (2021)
Omid Shirvani Samani, Johannes Scherr, Elham Kayvanpour, Jan Haas, David H Lehmann, Weng-Tein Gi, Karen S Frese, Rouven Nietsch, Tobias Fehlmann, Steffi Sandke, Tanja Weis, Andreas Keller, Hugo A Katus, Martin Halle, Norbert Frey, Benjamin Meder, Farbod Sedaghat-Hamedani
Marathon-Induced Cardiac Strain as Model for the Evaluation of Diagnostic microRNAs for Acute Myocardial Infarction. Journal of clinical medicine 11 (1) (2021)
Andrew C Yang, Fabian Kern, Patricia M Losada, Maayan R Agam, Christina A Maat, Georges P Schmartz, Tobias Fehlmann, Julian A Stein, Nicholas Schaum, Davis P Lee, Kruti Calcuttawala, Ryan T Vest, Daniela Berdnik, Nannan Lu, Oliver Hahn, David Gate, M Windy McNerney, Divya Channappa, Inma Cobos, Nicole Ludwig, Walter J Schulz-Schaeffer, Andreas Keller, Tony Wyss-Coray
Dysregulation of brain and choroid plexus cell types in severe COVID-19. Nature 595 (7868) (2021)
Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
miRTargetLink 2.0-interactive miRNA target gene and target pathway networks. Nucleic acids research 49 (W1) (2021)
Kellen Chen, Sun Hyung Kwon, Dominic Henn, Britta A Kuehlmann, Ruth Tevlin, Clark A Bonham, Michelle Griffin, Artem A Trotsyuk, Mimi R Borrelli, Chikage Noishiki, Jagannath Padmanabhan, Janos A Barrera, Zeshaan N Maan, Teruyuki Dohi, Chyna J Mays, Autumn H Greco, Dharshan Sivaraj, John Q Lin, Tobias Fehlmann, Alana M Mermin-Bunnell, Smiti Mittal, Michael S Hu, Alsu I Zamaleeva, Andreas Keller, Jayakumar Rajadas, Michael T Longaker, Michael Januszyk, Geoffrey C Gurtner
Disrupting biological sensors of force promotes tissue regeneration in large organisms. Nature communications 12 (1) (2021)
Marcus Miethke, Marco Pieroni, Tilmann Weber, Mark Brönstrup, Peter Hammann, Ludovic Halby, Paola B Arimondo, Philippe Glaser, Bertrand Aigle, Helge B Bode, Rui Moreira, Yanyan Li, Andriy Luzhetskyy, Marnix H Medema, Jean-Luc Pernodet, Marc Stadler, José Rubén Tormo, Olga Genilloud, Andrew W Truman, Kira J Weissman, Eriko Takano, Stefano Sabatini, Evi Stegmann, Heike Brötz-Oesterhelt, Wolfgang Wohlleben, Myriam Seemann, Martin Empting, Anna K H Hirsch, Brigitta Loretz, Claus-Michael Lehr, Alexander Titz, Jennifer Herrmann, Timo Jaeger, Silke Alt, Thomas Hesterkamp, Mathias Winterhalter, Andrea Schiefer, Kenneth M Pfarr, Achim Hoerauf, Heather Graz, Michael Graz, Mika Lindvall, Savithri Ramurthy, Anders Karlén, Maarten van Dongen, Hrvoje Petkovic, Andreas Keller, Frédéric Peyrane, Stefano Donadio, Laurent Fraisse, Laura J V Piddock, Ian H Gilbert, Heinz E Moser, Daniel Krug
Towards the sustainable discovery and development of new antibiotics. Nature reviews. Chemistry 5 (10) (2021)
Fabian Kern, Tobias Fehlmann, Ivo Violich, Eric Alsop, Elizabeth Hutchins, Mustafa Kahraman, Nadja L Grammes, Pedro Guimarães, Christina Backes, Kathleen L Poston, Kimberley J Billingsley, Rudi Balling, Lars Geffers, Rejko Krüger, Douglas Galasko, Brit Mollenhauer, Eckart Meese, Tony Wyss-Coray, David W Craig, Kendall Van Keuren-Jensen, Andreas Keller
Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson's disease progression. Nature aging 1 (3) (2021)
Tobias Fehlmann, Fabian Kern, Omar Laham, Christina Backes, Jeffrey Solomon, Pascal Hirsch, Carsten Volz, Rolf Müller, Andreas Keller
miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale. Nucleic acids research 49 (W1) (2021)
Andreas Keller, Laura Gröger, Thomas Tschernig, Jeffrey Solomon, Omar Laham, Nicholas Schaum, Viktoria Wagner, Fabian Kern, Georges Pierre Schmartz, Yongping Li, Adam Borcherding, Carola Meier, Tony Wyss-Coray, Eckart Meese, Tobias Fehlmann, Nicole Ludwig
miRNATissueAtlas2: an update to the human miRNA tissue atlas. Nucleic acids research (2021)
Marcus Miethke, Marco Pieroni, Tilmann Weber, Mark Brönstrup, Peter Hammann, Ludovic Halby, Paola B Arimondo, Philippe Glaser, Bertrand Aigle, Helge B Bode, Rui Moreira, Yanyan Li, Andriy Luzhetskyy, Marnix H Medema, Jean-Luc Pernodet, Marc Stadler, José Rubén Tormo, Olga Genilloud, Andrew W Truman, Kira J Weissman, Eriko Takano, Stefano Sabatini, Evi Stegmann, Heike Brötz-Oesterhelt, Wolfgang Wohlleben, Myriam Seemann, Martin Empting, Anna K H Hirsch, Brigitta Loretz, Claus-Michael Lehr, Alexander Titz, Jennifer Herrmann, Timo Jaeger, Silke Alt, Thomas Hesterkamp, Mathias Winterhalter, Andrea Schiefer, Kenneth M Pfarr, Achim Hoerauf, Heather Graz, Michael Graz, Mika Lindvall, Savithri Ramurthy, Anders Karlén, Maarten van Dongen, Hrvoje Petkovic, Andreas Keller, Frédéric Peyrane, Stefano Donadio, Laurent Fraisse, Laura J V Piddock, Ian H Gilbert, Heinz E Moser, Daniel Krug
Towards the sustainable discovery and development of new antibiotics. Nature reviews. Chemistry (2021)
Georges P Schmartz, Anna Hartung, Pascal Hirsch, Fabian Kern, Tobias Fehlmann, Rolf Müller, Andreas Keller
PLSDB: advancing a comprehensive database of bacterial plasmids. Nucleic acids research (2021)
Jan Haas, Karen S Frese, Farbod Sedaghat-Hamedani, Elham Kayvanpour, Rewati Tappu, Rouven Nietsch, Oguz Firat Tugrul, Michael Wisdom, Carsten Dietrich, Ali Amr, Tanja Weis, Torsten Niederdränk, Michael P Murphy, Thomas Krieg, Marcus Dörr, Linus Völker, Jens Fielitz, Norbert Frey, Stephan B Felix, Andreas Keller, Hugo A Katus, Benjamin Meder
Energy Metabolites as Biomarkers in Ischemic and Dilated Cardiomyopathy. International journal of molecular sciences 22 (4) (2021)
Nadja Grammes, Dominic Millenaar, Tobias Fehlmann, Fabian Kern, Michael Böhm, Felix Mahfoud, Andreas Keller
Research Output and International Cooperation Among Countries During the COVID-19 Pandemic: Scientometric Analysis. Journal of medical Internet research 22 (12) (2020)
Nicholas Schaum, Daniela Berdnik, Oliver Hahn, Róbert Pálovics, Shayan Hosseinzadeh, Song E Lee, Rene Sit, Davis P Lee, Patricia Morán Losada, Macy E Zardeneta, Tobias Fehlmann, James T Webber, Aaron McGeever, Kruti Calcuttawala, Hui Zhang, Daniela Berdnik, Vidhu Mathur, Weilun Tan, Alexander Zee, Michelle Tan, null null, Angela Oliveira Pisco, Jim Karkanias, Norma F Neff, Andreas Keller, Spyros Darmanis, Stephen R Quake, Tony Wyss-Coray
Ageing hallmarks exhibit organ-specific temporal signatures. Nature 583 (7817) (2020)
Jeffrey Solomon, Fabian Kern, Tobias Fehlmann, Eckart Meese, Andreas Keller
HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data. Biomolecules 10 (11) (2020)
Andreas Keller, Tobias Fehlmann, Christina Backes, Fabian Kern, Randi Elin Gislefoss, Hilde Langseth, Trine B Haugen, Nicole Ludwig, Eckart Meese
Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis. RNA biology 17 (10) (2020)
Tobias Fehlmann, Daniela Berdnik, Nicholas Schaum, Oliver Hahn, Mustafa Kahraman, Yongping Li, Nadja Grammes, Lars Geffers, Christina Backes, Rudi Balling, Fabian Kern, Rejko Krüger, Frank Lammert, Nicole Ludwig, Benjamin Meder, Bastian Fromm, Walter Maetzler, Daniela Berg, Kathrin Brockmann, Christian Deuschle, Anna-Katharina von Thaler, Gerhard W Eschweiler, Sofiya Milman, Nir Barziliai, Matthias Christian Reichert, Tony Wyss-Coray, Eckart Meese, Andreas Keller
Common diseases alter the physiological age-related blood microRNA profile. Nature communications 11 (1) (2020)
Alina Isakova, Tobias Fehlmann, Andreas Keller, Stephen R Quake
A mouse tissue atlas of small noncoding RNA. Proceedings of the National Academy of Sciences of the United States of America 117 (41) (2020)
Daniela Berdnik, David Gate, Nicholas Schaum, Tibor Nanasi, Song Eun Lee, Hanadie Yousef, Patricia Moran Losada, Daniela Berdnik, Andreas Keller, Joe Verghese, Sanish Sathyan, Claudio Franceschi, Sofiya Milman, Nir Barzilai, Tony Wyss-Coray
Undulating changes in human plasma proteome profiles across the lifespan. Nature medicine 25 (12) (2019)
Sascha K Manier, Andreas Keller, Jan Schäper, Markus R Meyer
Untargeted metabolomics by high resolution mass spectrometry coupled to normal and reversed phase liquid chromatography as a tool to study the in vitro biotransformation of new psychoactive substances. Scientific reports 9 (1) (2019)
Jan Haas, Stefan Mester, Alan Lai, Karen S Frese, Farbod Sedaghat-Hamedani, Elham Kayvanpour, Tobias Rausch, Rouven Nietsch, Jes-Niels Boeckel, Avisha Carstensen, Mirko Völkers, Carsten Dietrich, Dietmar Pils, Ali Amr, Daniel B Holzer, Diana Martins Bordalo, Daniel Oehler, Tanja Weis, Derliz Mereles, Sebastian Buss, Eva Riechert, Emil Wirsz, Maximilian Wuerstle, Jan O Korbel, Andreas Keller, Hugo A Katus, Andreas E Posch, Benjamin Meder
Genomic structural variations lead to dysregulation of important coding and non-coding RNA species in dilated cardiomyopathy. EMBO molecular medicine 10 (1) (2019)
Mustafa Kahraman, Anne Röske, Thomas Laufer, Tobias Fehlmann, Christina Backes, Fabian Kern, Jochen Kohlhaas, Hannah Schrörs, Anna Saiz, Cassandra Zabler, Nicole Ludwig, Peter A Fasching, Reiner Strick, Matthias Rübner, Matthias W Beckmann, Eckart Meese, Andreas Keller, Michael G Schrauder
MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer. Scientific reports 8 (1) (2018)
Trine B Haugen, Sinan Uğur Umu, Andreas Keller, Eckart Meese, Giske Ursin, Steinar Tretli, Robert Lyle, Hilde Langseth
Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity. Scientific reports 8 (1) (2018)
Stefan Rupf, Cédric Christian Laczny, Valentina Galata, Christina Backes, Andreas Keller, Natalia Umanskaya, Arzu Erol, Sascha Tierling, Christina Lo Porto, Jörn Walter, Jasmin Kirsch, Matthias Hannig, Christian Hannig
Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model. Scientific reports 8 (1) (2018)
Caroline Diener, Martin Hart, Dalia Alansary, Vanessa Poth, Barbara Walch-Rückheim, Jennifer Menegatti, Friedrich Grässer, Tobias Fehlmann, Stefanie Rheinheimer, Barbara A Niemeyer, Hans-Peter Lenhof, Andreas Keller, Eckart Meese
Modulation of intracellular calcium signaling by microRNA-34a-5p. Cell death & disease 9 (10) (2018)
Masood Abu-Halima, Sebastian Häusler, Christina Backes, Tobias Fehlmann, Claudia Staib, Sigrun Nestel, Irina Nazarenko, Eckart Meese, Andreas Keller
Micro-ribonucleic acids and extracellular vesicles repertoire in the spent culture media is altered in women undergoing In Vitro Fertilization. Scientific reports 7 (1) (2017)
Nicole Ludwig, Meike Becker, Timo Schumann, Timo Speer, Tobias Fehlmann, Andreas Keller, Eckart Meese
Bias in recent miRBase annotations potentially associated with RNA quality issues. Scientific reports 7 (1) (2017)
Christina Backes, Tim Kehl, Daniel Stöckel, Tobias Fehlmann, Lara Schneider, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
miRPathDB: a new dictionary on microRNAs and target pathways. Nucleic acids research 45 (D1) (2016)
Anne Hecksteden, Petra Leidinger, Christina Backes, Stefanie Rheinheimer, Mark Pfeiffer, Alexander Ferrauti, Michael Kellmann, Farbod Sedaghat-Hamedani, Benjamin Meder, Eckart Meese, Tim Meyer, Andreas Keller
Erratum to: miRNAs and sports: tracking training status and potentially confounding diagnoses. Journal of translational medicine 14 (1) (2016)
Anne Hecksteden, Petra Leidinger, Christina Backes, Stefanie Rheinheimer, Mark Pfeiffer, Alexander Ferrauti, Michael Kellmann, Farbod Sedaghat-Hamedani, Benjamin Meder, Eckart Meese, Tim Meyer, Andreas Keller
miRNAs and sports: tracking training status and potentially confounding diagnoses. Journal of translational medicine 14 (1) (2016)
Christina Backes, Benjamin Meder, Alan Lai, Monika Stoll, Frank Rühle, Hugo A Katus, Andreas Keller
Pathway-based variant enrichment analysis on the example of dilated cardiomyopathy. Human genetics 135 (1) (2015)