Stephen R Quake (S R Quake)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 70

Top Topics

Systemic Sclerosis

Toxoplasma Gondii

Top Venues

Science advances

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature (2024)
Cheng Wang, Yuejun Jessie Wang, Lihua Ying, Ronald J Wong, Cecele C Quaintance, Xiumei Hong, Norma Neff, Xiaobin Wang, Joseph R Biggio, Sam Mesiano, Stephen R Quake, Cristina M Alvira, David N Cornfield, David K Stevenson, Gary M Shaw, Jingjing Li
Integrative analysis of noncoding mutations identifies the druggable genome in preterm birth. Science advances 10 (3) (2024)
Shuai Wang, Chelsea DeLeon, Wenfei Sun, Stephen R Quake, Bryan L Roth, Thomas C Südhof
Alternative splicing of latrophilin-3 controls synapse formation. Nature 626 (7997) (2024)
Zhihui Liu, Wenfei Sun, Yi Han Ng, Hua Dong, Stephen R Quake, Thomas C Südhof
The cortical amygdala consolidates a socially transmitted long-term memory. Nature (2024)
Zhihui Liu, Wenfei Sun, Yi Han Ng, Hua Dong, Stephen R Quake, Thomas C Südhof
The cortical amygdala consolidates a socially transmitted long-term memory. Nature 632 (8024) (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature 627 (8003) (2024)
Shuai Wang, Chelsea DeLeon, Wenfei Sun, Stephen R Quake, Bryan L Roth, Thomas C Südhof
Alternative splicing of latrophilin-3 controls synapse formation. Nature (2024)
Zhihui Liu, Wenfei Sun, Yi Han Ng, Hua Dong, Stephen R Quake, Thomas C Südhof
The cortical amygdala consolidates a socially transmitted long-term memory. Nature 632 (8024) (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature 627 (8003) (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature (2024)
Shuai Wang, Chelsea DeLeon, Wenfei Sun, Stephen R Quake, Bryan L Roth, Thomas C Südhof
Alternative splicing of latrophilin-3 controls synapse formation. Nature 626 (7997) (2024)
Zhihui Liu, Wenfei Sun, Yi Han Ng, Hua Dong, Stephen R Quake, Thomas C Südhof
The cortical amygdala consolidates a socially transmitted long-term memory. Nature 632 (8024) (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature (2024)
Cheng Wang, Yuejun Jessie Wang, Lihua Ying, Ronald J Wong, Cecele C Quaintance, Xiumei Hong, Norma Neff, Xiaobin Wang, Joseph R Biggio, Sam Mesiano, Stephen R Quake, Cristina M Alvira, David N Cornfield, David K Stevenson, Gary M Shaw, Jingjing Li
Integrative analysis of noncoding mutations identifies the druggable genome in preterm birth. Science advances 10 (3) (2024)
Zhihui Liu, Wenfei Sun, Yi Han Ng, Hua Dong, Stephen R Quake, Thomas C Südhof
The cortical amygdala consolidates a socially transmitted long-term memory. Nature 632 (8024) (2024)
Shuai Wang, Chelsea DeLeon, Wenfei Sun, Stephen R Quake, Bryan L Roth, Thomas C Südhof
Alternative splicing of latrophilin-3 controls synapse formation. Nature 626 (7997) (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature 627 (8003) (2024)
Zhihui Liu, Wenfei Sun, Yi Han Ng, Hua Dong, Stephen R Quake, Thomas C Südhof
The cortical amygdala consolidates a socially transmitted long-term memory. Nature 632 (8024) (2024)
Cheng Wang, Yuejun Jessie Wang, Lihua Ying, Ronald J Wong, Cecele C Quaintance, Xiumei Hong, Norma Neff, Xiaobin Wang, Joseph R Biggio, Sam Mesiano, Stephen R Quake, Cristina M Alvira, David N Cornfield, David K Stevenson, Gary M Shaw, Jingjing Li
Integrative analysis of noncoding mutations identifies the druggable genome in preterm birth. Science advances 10 (3) (2024)
Wenfei Sun, Zhihui Liu, Xian Jiang, Michelle B Chen, Hua Dong, Jonathan Liu, Thomas C Südhof, Stephen R Quake
Spatial transcriptomics reveal neuron-astrocyte synergy in long-term memory. Nature 627 (8003) (2024)
Cheng Wang, Yuejun Jessie Wang, Lihua Ying, Ronald J Wong, Cecele C Quaintance, Xiumei Hong, Norma Neff, Xiaobin Wang, Joseph R Biggio, Sam Mesiano, Stephen R Quake, Cristina M Alvira, David N Cornfield, David K Stevenson, Gary M Shaw, Jingjing Li
Integrative analysis of noncoding mutations identifies the druggable genome in preterm birth. Science advances 10 (3) (2024)
Cheng Wang, Yuejun Jessie Wang, Lihua Ying, Ronald J Wong, Cecele C Quaintance, Xiumei Hong, Norma Neff, Xiaobin Wang, Joseph R Biggio, Sam Mesiano, Stephen R Quake, Cristina M Alvira, David N Cornfield, David K Stevenson, Gary M Shaw, Jingjing Li
Integrative analysis of noncoding mutations identifies the druggable genome in preterm birth. Science advances 10 (3) (2024)
Shuai Wang, Chelsea DeLeon, Wenfei Sun, Stephen R Quake, Bryan L Roth, Thomas C Südhof
Alternative splicing of latrophilin-3 controls synapse formation. Nature 626 (7997) (2024)
Trung H M Pham, Yuan Xue, Susan M Brewer, Bernstein E Kenneth, Stephen R Quake, Denise M Monack
Single-cell profiling identifies ACE + granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection. Science advances 9 (1) (2023)
Trung H M Pham, Yuan Xue, Susan M Brewer, Bernstein E Kenneth, Stephen R Quake, Denise M Monack
Single-cell profiling identifies ACE + granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection. Science advances 9 (1) (2023)
Trung H M Pham, Yuan Xue, Susan M Brewer, Bernstein E Kenneth, Stephen R Quake, Denise M Monack
Single-cell profiling identifies ACE + granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection. Science advances 9 (1) (2023)
Trung H M Pham, Yuan Xue, Susan M Brewer, Bernstein E Kenneth, Stephen R Quake, Denise M Monack
Single-cell profiling identifies ACE + granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection. Science advances 9 (1) (2023)
Trung H M Pham, Yuan Xue, Susan M Brewer, Bernstein E Kenneth, Stephen R Quake, Denise M Monack
Single-cell profiling identifies ACE + granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection. Science advances 9 (1) (2023)
Mira N Moufarrej, Stephen R Quake
An inexpensive semi-automated sample processing pipeline for cell-free RNA extraction. Nature protocols (2023)
Tzu-Chiao Lu, Maria Brbic, Ye-Jin Park, Tyler Jackson, Jiaye Chen, Sai Saroja Kolluru, Yanyan Qi, Nadja Sandra Katheder, Xiaoyu Tracy Cai, Seungjae Lee, Yen-Chung Chen, Niccole Auld, Chung-Yi Liang, Sophia H Ding, Doug Welsch, Samuel D'Souza, Angela Oliveira Pisco, Robert C Jones, Jure Leskovec, Eric C Lai, Hugo J Bellen, Liqun Luo, Heinrich Jasper, Stephen R Quake, Hongjie Li
Aging Fly Cell Atlas identifies exhaustive aging features at cellular resolution. Science (New York, N.Y.) 380 (6650) (2023)
Jun Xu, Yifang Liu, Hongjie Li, Alexander J Tarashansky, Colin H Kalicki, Ruei-Jiun Hung, Yanhui Hu, Aram Comjean, Sai Saroja Kolluru, Bo Wang, Stephen R Quake, Liqun Luo, Andrew P McMahon, Julian A T Dow, Norbert Perrimon
Transcriptional and functional motifs defining renal function revealed by single-nucleus RNA sequencing. Proceedings of the National Academy of Sciences of the United States of America 119 (25) (2022)
Felicia Reinitz, Elizabeth Y Chen, Benedetta Nicolis di Robilant, Bayarsaikhan Chuluun, Jane Antony, Robert C Jones, Neha Gubbi, Karen Lee, William Hai Dang Ho, Sai Saroja Kolluru, Dalong Qian, Maddalena Adorno, Katja Piltti, Aileen J Anderson, Michelle Monje, H Craig Heller, Stephen R Quake, Michael F Clarke
Inhibiting USP16 rescues stem cell aging and memory in an Alzheimer's model. eLife 11 (2022)
Mira N Moufarrej, Sevahn K Vorperian, Ronald J Wong, Ana A Campos, Cecele C Quaintance, Rene V Sit, Michelle Tan, Angela M Detweiler, Honey Mekonen, Norma F Neff, Courtney Baruch-Gravett, James A Litch, Maurice L Druzin, Virginia D Winn, Gary M Shaw, David K Stevenson, Stephen R Quake
Early prediction of preeclampsia in pregnancy with cell-free RNA. Nature 602 (7898) (2022)
Róbert Pálovics, Andreas Keller, Nicholas Schaum, Weilun Tan, Tobias Fehlmann, Michael Borja, Fabian Kern, Liana Bonanno, Kruti Calcuttawala, James Webber, Aaron McGeever, null null, Jian Luo, Angela Oliveira Pisco, Jim Karkanias, Norma F Neff, Spyros Darmanis, Stephen R Quake, Tony Wyss-Coray
Molecular hallmarks of heterochronic parabiosis at single-cell resolution. Nature 603 (7900) (2022)
Christin S Kuo, Spyros Darmanis, Alex Diaz de Arce, Yin Liu, Nicole Almanzar, Timothy Ting-Hsuan Wu, Stephen R Quake, Mark A Krasnow
Neuroendocrinology of the lung revealed by single-cell RNA sequencing. eLife 11 (2022)
Hongjie Li, Jasper Janssens, Maxime De Waegeneer, Sai Saroja Kolluru, Kristofer Davie, Vincent Gardeux, Wouter Saelens, Fabrice P A David, Maria Brbic, Katina I Spanier, Jure Leskovec, Colleen N McLaughlin, Qijing Xie, Robert C Jones, Katja Brueckner, Jiwon Shim, Sudhir Gopal Tattikota, Frank Schnorrer, Katja Rust, Rebecca P Kim-Yip, Zita Carvalho-Santos, Carlos Ribeiro, Soumitra Pal, Sharvani Mahadevaraju, Teresa M Przytycka, Aaron M Allen, Stephen F Goodwin, Cameron W Berry, Margaret T Fuller, Helen White-Cooper, Erika L Matunis, Stephen DiNardo, Anthony Galenza, Lucy Erin O'Brien, Julian A T Dow, null null, Heinrich Jasper, Brian Oliver, Norbert Perrimon, Bart Deplancke, Stephen R Quake, Liqun Luo, Stein Aerts, Devika Agarwal, Yasir Ahmed-Braimah, Michelle Arbeitman, Majd M Ariss, Jordan Augsburger, Kumar Ayush, Catherine C Baker, Torsten Banisch, Katja Birker, Rolf Bodmer, Benjamin Bolival, Susanna E Brantley, Julie A Brill, Nora C Brown, Norene A Buehner, Xiaoyu Tracy Cai, Rita Cardoso-Figueiredo, Fernando Casares, Amy Chang, Thomas R Clandinin, Sheela Crasta, Claude Desplan, Angela M Detweiler, Darshan B Dhakan, Erika Donà, Stefanie Engert, Swann Floc'hlay, Nancy George, Amanda J González-Segarra, Andrew K Groves, Samantha Gumbin, Yanmeng Guo, Devon E Harris, Yael Heifetz, Stephen L Holtz, Felix Horns, Bruno Hudry, Ruei-Jiun Hung, Yuh Nung Jan, Jacob S Jaszczak, Gregory S X E Jefferis, Jim Karkanias, Timothy L Karr, Nadja Sandra Katheder, James Kezos, Anna A Kim, Seung K Kim, Lutz Kockel, Nikolaos Konstantinides, Thomas B Kornberg, Henry M Krause, Andrew Thomas Labott, Meghan Laturney, Ruth Lehmann, Sarah Leinwand, Jiefu Li, Joshua Shing Shun Li, Kai Li, Ke Li, Liying Li, Tun Li, Maria Litovchenko, Han-Hsuan Liu, Yifang Liu, Tzu-Chiao Lu, Jonathan Manning, Anjeli Mase, Mikaela Matera-Vatnick, Neuza Reis Matias, Caitlin E McDonough-Goldstein, Aaron McGeever, Alex D McLachlan, Paola Moreno-Roman, Norma Neff, Megan Neville, Sang Ngo, Tanja Nielsen, Caitlin E O'Brien, David Osumi-Sutherland, Mehmet Neset Özel, Irene Papatheodorou, Maja Petkovic, Clare Pilgrim, Angela Oliveira Pisco, Carolina Reisenman, Erin Nicole Sanders, Gilberto Dos Santos, Kristin Scott, Aparna Sherlekar, Philip Shiu, David Sims, Rene V Sit, Maija Slaidina, Harold E Smith, Gabriella Sterne, Yu-Han Su, Daniel Sutton, Marco Tamayo, Michelle Tan, Ibrahim Tastekin, Christoph Treiber, David Vacek, Georg Vogler, Scott Waddell, Wanpeng Wang, Rachel I Wilson, Mariana F Wolfner, Yiu-Cheung E Wong, Anthony Xie, Jun Xu, Shinya Yamamoto, Jia Yan, Zepeng Yao, Kazuki Yoda, Ruijun Zhu, Robert P Zinzen
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly. Science (New York, N.Y.) 375 (6584) (2022)
Sevahn K Vorperian, Mira N Moufarrej, null null, Stephen R Quake
Cell types of origin of the cell-free transcriptome. Nature biotechnology 40 (6) (2022)
Morten Rasmussen, Mitsu Reddy, Rory Nolan, Joan Camunas-Soler, Arkady Khodursky, Nikolai M Scheller, David E Cantonwine, Line Engelbrechtsen, Jia Dai Mi, Arup Dutta, Tiffany Brundage, Farooq Siddiqui, Mainou Thao, Elaine P S Gee, Johnny La, Courtney Baruch-Gravett, Mark K Santillan, Saikat Deb, Shaali M Ame, Said M Ali, Melanie Adkins, Mark A DePristo, Manfred Lee, Eugeni Namsaraev, Dorte Jensen Gybel-Brask, Lillian Skibsted, James A Litch, Donna A Santillan, Sunil Sazawal, Rachel M Tribe, James M Roberts, Maneesh Jain, Estrid Høgdall, Claudia Holzman, Stephen R Quake, Michal A Elovitz, Thomas F McElrath
RNA profiles reveal signatures of future health and disease in pregnancy. Nature 601 (7893) (2022)
Alina Isakova, Norma F Neff, Stephen R Quake
Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states. Proceedings of the National Academy of Sciences of the United States of America 118 (51) (2022)
Felipe Vilella, W Wang, I Moreno, B Roson, Stephen R Quake, Carlos Simon
Single-cell RNA sequencing of SARS-CoV-2 cell entry factors in the preconceptional human endometrium. Human reproduction (Oxford, England) 36 (10) (2021)
Justus M Kebschull, Ethan B Richman, Noam Ringach, Drew Friedmann, Eddy Albarran, Sai Saroja Kolluru, Robert C Jones, William E Allen, Ying Wang, Seung Woo Cho, Huaijun Zhou, Jun B Ding, Howard Y Chang, Karl Deisseroth, Stephen R Quake, Liqun Luo
Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set. Science (New York, N.Y.) 370 (6523) (2021)
Colleen N McLaughlin, Maria Brbic, Qijing Xie, Tongchao Li, Felix Horns, Sai Saroja Kolluru, Justus M Kebschull, David Vacek, Anthony Xie, Jiefu Li, Robert C Jones, Jure Leskovec, Stephen R Quake, Liqun Luo, Hongjie Li
Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila. eLife 10 (2021)
Qijing Xie, Maria Brbic, Felix Horns, Sai Saroja Kolluru, Robert C Jones, Jiefu Li, Anay R Reddy, Anthony Xie, Sayeh Kohani, Zhuoran Li, Colleen N McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J Luginbuhl, Jure Leskovec, Stephen R Quake, Liqun Luo, Hongjie Li
Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons. eLife 10 (2021)
Daniel T Pederick, Jan H Lui, Ellen C Gingrich, Chuanyun Xu, Mark J Wagner, Yuanyuan Liu, Zhigang He, Stephen R Quake, Liqun Luo
Reciprocal repulsions instruct the precise assembly of parallel hippocampal networks. Science (New York, N.Y.) 372 (6546) (2021)
Zhiyuan Yao, Fabio Zanini, Sathish Kumar, Marwah Karim, Sirle Saul, Nishank Bhalla, Nuttada Panpradist, Avery Muniz, Aarthi Narayanan, Stephen R Quake, Shirit Einav
The transcriptional landscape of Venezuelan equine encephalitis virus (TC-83) infection. PLoS neglected tropical diseases 15 (3) (2021)
Xiaoyu Tracy Cai, Hongjie Li, Martin Borch Jensen, Elie Maksoud, Jovencio Borneo, Yuxin Liang, Stephen R Quake, Liqun Luo, Pejmun Haghighi, Heinrich Jasper
Gut cytokines modulate olfaction through metabolic reprogramming of glia. Nature 596 (7870) (2021)
Pengyang Li, Dania Nanes Sarfati, Yuan Xue, Xi Yu, Alexander J Tarashansky, Stephen R Quake, Bo Wang
Single-cell analysis of Schistosoma mansoni identifies a conserved genetic program controlling germline stem cell fate. Nature communications 12 (1) (2021)
Yuan Xue, Terence C Theisen, Suchita Rastogi, Abel Ferrel, Stephen R Quake, John C Boothroyd
A single-parasite transcriptional atlas of Toxoplasma Gondii reveals novel control of antigen expression. eLife 9 (2020)
Nicholas Schaum, Daniela Berdnik, Oliver Hahn, Róbert Pálovics, Shayan Hosseinzadeh, Song E Lee, Rene Sit, Davis P Lee, Patricia Morán Losada, Macy E Zardeneta, Tobias Fehlmann, James T Webber, Aaron McGeever, Kruti Calcuttawala, Hui Zhang, Daniela Berdnik, Vidhu Mathur, Weilun Tan, Alexander Zee, Michelle Tan, null null, Angela Oliveira Pisco, Jim Karkanias, Norma F Neff, Andreas Keller, Spyros Darmanis, Stephen R Quake, Tony Wyss-Coray
Ageing hallmarks exhibit organ-specific temporal signatures. Nature 583 (7817) (2020)
Wanxin Wang, Felipe Vilella, Pilar Alama, Inmaculada Moreno, Marco Mignardi, Alina Isakova, Wenying Pan, Carlos Simon, Stephen R Quake
Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle. Nature medicine 26 (10) (2020)
Michelle B Chen, Xian Jiang, Stephen R Quake, Thomas C Südhof
Persistent transcriptional programmes are associated with remote memory. Nature 587 (7834) (2020)
Kyle J Travaglini, Ahmad N Nabhan, Lolita Penland, Rahul Sinha, Astrid Gillich, Rene V Sit, Stephen Chang, Stephanie D Conley, Yasuo Mori, Jun Seita, Gerald J Berry, Joseph B Shrager, Ross J Metzger, Christin S Kuo, Norma F Neff, Irving L Weissman, Stephen R Quake, Mark A Krasnow
A molecular cell atlas of the human lung from single-cell RNA sequencing. Nature 587 (7835) (2020)
Racquel Domingo-Gonzalez, Fabio Zanini, Xibing Che, Min Liu, Robert C Jones, Michael A Swift, Stephen R Quake, David N Cornfield, Cristina M Alvira
Diverse homeostatic and immunomodulatory roles of immune cells in the developing mouse lung at single cell resolution. eLife 9 (2020)
Alina Isakova, Tobias Fehlmann, Andreas Keller, Stephen R Quake
A mouse tissue atlas of small noncoding RNA. Proceedings of the National Academy of Sciences of the United States of America 117 (41) (2020)
Elizabeth R Jerison, Stephen R Quake
Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivo. eLife 9 (2020)
Shusuke Toden, Jiali Zhuang, Alexander D Acosta, Amy P Karns, Neeraj S Salathia, James B Brewer, Donna M Wilcock, Jonathan Aballi, Mike Nerenberg, Stephen R Quake, Arkaitz Ibarra
Noninvasive characterization of Alzheimer's disease by circulating, cell-free messenger RNA next-generation sequencing. Science advances 6 (50) (2020)
Gulfem D Guler, Yuhong Ning, Chin-Jen Ku, Tierney Phillips, Erin McCarthy, Christopher K Ellison, Anna Bergamaschi, Francois Collin, Paul Lloyd, Aaron Scott, Michael Antoine, Wendy Wang, Kim Chau, Alan Ashworth, Stephen R Quake, Samuel Levy
Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA. Nature communications 11 (1) (2020)
Andrew C Yang, Marc Y Stevens, Michelle B Chen, Davis P Lee, Daniel Stähli, David Gate, Kevin Contrepois, Winnie Chen, Tal Iram, Lichao Zhang, Ryan T Vest, Aisling Chaney, Benoit Lehallier, Niclas E Olsson, Haley du Bois, Ryan Hsieh, Haley C Cropper, Daniela Berdnik, Lulin Li, Elizabeth Y Wang, Gavin M Traber, Carolyn R Bertozzi, Jian Luo, Michael Paul Snyder, Joshua E Elias, Stephen R Quake, Michelle L James, Tony Wyss-Coray
Physiological blood-brain transport is impaired with age by a shift in transcytosis. Nature 583 (7816) (2020)
Derek Croote, Spyros Darmanis, Kari Christine Nadeau, Stephen R Quake
High-affinity allergen-specific human antibodies cloned from single IgE B cell transcriptomes. Science (New York, N.Y.) 362 (6420) (2019)
Jing Ren, Alina Isakova, Drew Friedmann, Jiawei Zeng, Sophie M Grutzner, Albert Pun, Grace Q Zhao, Sai Saroja Kolluru, Ruiyu Wang, Rui Lin, Pengcheng Li, Anan Li, Jennifer L Raymond, Qingming Luo, Minmin Luo, Stephen R Quake, Liqun Luo
Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei. eLife 8 (2019)
Jonathan Deaton, Feiqiao Brian Yu, Stephen R Quake
Mini-Metagenomics and Nucleotide Composition Aid the Identification and Host Association of Novel Bacteriophage Sequences. Advanced biosystems 3 (11) (2019)
Stephanie Tzouanas Schmidt, Feiqiao Brian Yu, Paul C Blainey, Andrew P May, Stephen R Quake
Nucleic acid cleavage with a hyperthermophilic Cas9 from an uncultured Ignavibacterium. Proceedings of the National Academy of Sciences of the United States of America 116 (46) (2019)
Natasha D Durham, Aditi Agrawal, Eric Waltari, Derek Croote, Fabio Zanini, Mallorie Fouch, Edgar Davidson, Olivia Smith, Esteban Carabajal, John E Pak, Benjamin J Doranz, Makeda Robinson, Ana M Sanz, Ludwig L Albornoz, Fernando Rosso, Shirit Einav, Stephen R Quake, Krista M McCutcheon, Leslie Goo
Broadly neutralizing human antibodies against dengue virus identified by single B cell transcriptomics. eLife 8 (2019)
Alexander J Tarashansky, Yuan Xue, Pengyang Li, Stephen R Quake, Bo Wang
Self-assembling manifolds in single-cell RNA sequencing data. eLife 8 (2019)
Bojk A Berghuis, Feiqiao Brian Yu, Frederik Schulz, Paul C Blainey, Tanja Woyke, Stephen R Quake
Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens. Proceedings of the National Academy of Sciences of the United States of America 116 (11) (2019)
Thuy T M Ngo, Mira N Moufarrej, Marie-Louise H Rasmussen, Joan Camunas-Soler, Wenying Pan, Jennifer Okamoto, Norma F Neff, Keli Liu, Ronald J Wong, Katheryne L Downes, Robert Tibshirani, Gary M Shaw, Line Skotte, David K Stevenson, Joseph R Biggio, Michal A Elovitz, Mads Melbye, Stephen R Quake
Noninvasive blood tests for fetal development predict gestational age and preterm delivery. Science (New York, N.Y.) 360 (6393) (2018)
Charles F A de Bourcy, Cornelia L Dekker, Mark M Davis, Mark Robert Nicolls, Stephen R Quake
Dynamics of the human antibody repertoire after B cell depletion in systemic sclerosis. Science immunology 2 (15) (2018)
Feiqiao Brian Yu, Paul C Blainey, Frederik Schulz, Tanja Woyke, Mark A Horowitz, Stephen R Quake
Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples. eLife 6 (2017)