Eran A Mukamel

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 25

Top Venues

Nature

Molecular psychiatry

Nature communications

bioRxiv : the preprint server for biology

University of California San Diego

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego Jul 01 2014

United States

Assistant Professor :: Cognitive Science

Education History

Stanford University

United States

PHD :: Physics

Publications

Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph Paul Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N Byrareddy, Linda Chang, Declan Clarke, Prashant S Emani, Dana Gabuzda, Kyle J Gaulton, Michelle G Giglio, Federico M Giorgi, Busra Gok, Chittibabu Guda, Eran Hadas, Brian R Herb, Wen Hu, Anita Huttner, Mohammad R Ishmam, Michelle M Jacobs, Jennifer Kelschenbach, Dong-Wook Kim, Cheyu Lee, Shuhui Liu, Xiaokun Liu, Bertha K Madras, Anup A Mahurkar, Deborah C Mash, Eran A Mukamel, Meng Niu, Richard M O'Connor, Chelsea M Pagan, Alina P S Pang, Piya Pillai, Vez Repunte-Canonigo, W Brad Ruzicka, Jay Stanley, Timothy L Tickle, Shang-Yi A Tsai, Allen Wang, Lauren Wills, Alyssa M Wilson, Susan N Wright, Siwei Xu, Junchen Yang, Maryam Zand, Le Zhang, Jing Zhang, Schahram Akbarian, Shilpa Buch, Christine S Cheng, Michael J Corley, Howard S Fox, Mark B Gerstein, Suryaram Gummuluru, Myriam Heiman, Ya-Chi Ho, Manolis Kellis, Paul J Kenny, Yuval Kluger, Teresa A Milner, David J Moore, Susan Morgello, Lishomwa C Ndhlovu, Tariq M Rana, Pietro Paolo Sanna, John S Satterlee, Nenad Sestan, Stephen A Spector, Serena Spudich, Hagen U Tilgner, David J Volsky, Owen R White, Dionna W Williams, Hongkui Zeng
The single-cell opioid responses in the context of HIV (SCORCH) consortium. Molecular psychiatry (2024)
Kevin G Johnston, Bereket T Berackey, Kristine M Tran, Alon Gelber, Zhaoxia Yu, Grant R MacGregor, Eran A Mukamel, Zhiqun Tan, Kim N Green, Xiangmin Xu
Single-cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2 R47H Alzheimer's risk gene mutation. Molecular psychiatry (2024)
Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph Paul Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N Byrareddy, Linda Chang, Declan Clarke, Prashant S Emani, Dana Gabuzda, Kyle J Gaulton, Michelle G Giglio, Federico M Giorgi, Busra Gok, Chittibabu Guda, Eran Hadas, Brian R Herb, Wen Hu, Anita Huttner, Mohammad R Ishmam, Michelle M Jacobs, Jennifer Kelschenbach, Dong-Wook Kim, Cheyu Lee, Shuhui Liu, Xiaokun Liu, Bertha K Madras, Anup A Mahurkar, Deborah C Mash, Eran A Mukamel, Meng Niu, Richard M O'Connor, Chelsea M Pagan, Alina P S Pang, Piya Pillai, Vez Repunte-Canonigo, W Brad Ruzicka, Jay Stanley, Timothy L Tickle, Shang-Yi A Tsai, Allen Wang, Lauren Wills, Alyssa M Wilson, Susan N Wright, Siwei Xu, Junchen Yang, Maryam Zand, Le Zhang, Jing Zhang, Schahram Akbarian, Shilpa Buch, Christine S Cheng, Michael J Corley, Howard S Fox, Mark B Gerstein, Suryaram Gummuluru, Myriam Heiman, Ya-Chi Ho, Manolis Kellis, Paul J Kenny, Yuval Kluger, Teresa A Milner, David J Moore, Susan Morgello, Lishomwa C Ndhlovu, Tariq M Rana, Pietro Paolo Sanna, John S Satterlee, Nenad Sestan, Stephen A Spector, Serena Spudich, Hagen U Tilgner, David J Volsky, Owen R White, Dionna W Williams, Hongkui Zeng
The single-cell opioid responses in the context of HIV (SCORCH) consortium. Molecular psychiatry (2024)
Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph Paul Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N Byrareddy, Linda Chang, Declan Clarke, Prashant S Emani, Dana Gabuzda, Kyle J Gaulton, Michelle G Giglio, Federico M Giorgi, Busra Gok, Chittibabu Guda, Eran Hadas, Brian R Herb, Wen Hu, Anita Huttner, Mohammad R Ishmam, Michelle M Jacobs, Jennifer Kelschenbach, Dong-Wook Kim, Cheyu Lee, Shuhui Liu, Xiaokun Liu, Bertha K Madras, Anup A Mahurkar, Deborah C Mash, Eran A Mukamel, Meng Niu, Richard M O'Connor, Chelsea M Pagan, Alina P S Pang, Piya Pillai, Vez Repunte-Canonigo, W Brad Ruzicka, Jay Stanley, Timothy L Tickle, Shang-Yi A Tsai, Allen Wang, Lauren Wills, Alyssa M Wilson, Susan N Wright, Siwei Xu, Junchen Yang, Maryam Zand, Le Zhang, Jing Zhang, Schahram Akbarian, Shilpa Buch, Christine S Cheng, Michael J Corley, Howard S Fox, Mark B Gerstein, Suryaram Gummuluru, Myriam Heiman, Ya-Chi Ho, Manolis Kellis, Paul J Kenny, Yuval Kluger, Teresa A Milner, David J Moore, Susan Morgello, Lishomwa C Ndhlovu, Tariq M Rana, Pietro Paolo Sanna, John S Satterlee, Nenad Sestan, Stephen A Spector, Serena Spudich, Hagen U Tilgner, David J Volsky, Owen R White, Dionna W Williams, Hongkui Zeng
The single-cell opioid responses in the context of HIV (SCORCH) consortium. Molecular psychiatry (2024)
Kevin G Johnston, Bereket T Berackey, Kristine M Tran, Alon Gelber, Zhaoxia Yu, Grant R MacGregor, Eran A Mukamel, Zhiqun Tan, Kim N Green, Xiangmin Xu
Single-cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2 R47H Alzheimer's risk gene mutation. Molecular psychiatry (2024)
Eran A Mukamel, Hanqing Liu, M Margarita Behrens, Joseph R Ecker
Cell type-specific enrichment of somatic aneuploidy in the mammalian brain. bioRxiv : the preprint server for biology (2023)
Jun-Hao Li, Manoj Kumar Jaiswal, Jo-Fan Chien, Alexey Kozlenkov, Jinyoung Jung, Ping Zhou, Mahammad Gardashli, Luc J Pregent, Erica Engelberg-Cook, Gourisankar Ghosh, Veronique V Belzil, Eran A Mukamel, Stella Dracheva
Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation. Nature communications 14 (1) (2023)
Eran A Mukamel, Hanqing Liu, M Margarita Behrens, Joseph R Ecker
Cell type-specific enrichment of somatic aneuploidy in the mammalian brain. bioRxiv : the preprint server for biology (2023)
Jingtian Zhou, Zhuzhu Zhang, May Wu, Hanqing Liu, Yan Pang, Anna Bartlett, Zihao Peng, Wubin Ding, Angeline Rivkin, Will N Lagos, Elora Williams, Cheng-Ta Lee, Paula Assakura Miyazaki, Andrew Aldridge, Qiurui Zeng, J L Angelo Salinda, Naomi Claffey, Michelle Liem, Conor Fitzpatrick, Lara Boggeman, Zizhen Yao, Kimberly A Smith, Bosiljka Tasic, Jordan Altshul, Mia A Kenworthy, Cynthia Valadon, Joseph R Nery, Rosa Gomez Castanon, Neelakshi S Patne, Minh Vu, Mohammad Rashid, Matthew Jacobs, Tony Ito, Julia Osteen, Nora Emerson, Jasper Lee, Silvia Cho, Jonathan A Rink, Hsiang-Hsuan Huang, António Pinto-Duarte, Bertha Dominguez, Jared B Smith, Carolyn O'Connor, Hongkui Zeng, Shengbo Chen, Kuo-Fen Lee, Eran A Mukamel, Xin Jin, M Margarita Behrens, Joseph R Ecker, Edward M Callaway
Brain-wide correspondence of neuronal epigenomics and distant projections. Nature 624 (7991) (2023)
Eran A Mukamel, Hanqing Liu, M Margarita Behrens, Joseph R Ecker
Cell type-specific enrichment of somatic aneuploidy in the mammalian brain. bioRxiv : the preprint server for biology (2023)
Eran A Mukamel, Hanqing Liu, M Margarita Behrens, Joseph R Ecker
Cell type-specific enrichment of somatic aneuploidy in the mammalian brain. bioRxiv : the preprint server for biology (2023)
Winston H Cuddleston, Jun-Hao Li, Xuanjia Fan, Alexey Kozenkov, Matthew Lalli, Shahrukh Khalique, Stella Dracheva, Eran A Mukamel, Michael S Breen
Cellular and genetic drivers of RNA editing variation in the human brain. Nature communications 13 (1) (2022)
Jun-Hao Li, António Pinto-Duarte, Mark Zander, Michael S Cuoco, Chi-Yu Lai, Julia K Osteen, Lingjing Fang, Chongyuan Luo, Jacinta D Lucero, Rosa Gomez-Castanon, Joseph R Nery, Isai Silva-Garcia, Yan Pang, Terrence J Sejnowski, Susan B Powell, Joseph R Ecker, Eran A Mukamel, M Margarita Behrens
Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3. eLife 11 (2022)
Rongxin Fang, Sebastian Preissl, Yang Li, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K Shiau, Xinzhu Zhou, Fangming Xie, Eran A Mukamel, Kai Zhang, Yanxiao Zhang, M Margarita Behrens, Joseph R Ecker, Bing Ren
Comprehensive analysis of single cell ATAC-seq data with SnapATAC. Nature communications 12 (1) (2021)
Zhuzhu Zhang, Jingtian Zhou, Pengcheng Tan, Yan Pang, Angeline C Rivkin, Megan A Kirchgessner, Elora Williams, Cheng-Ta Lee, Hanqing Liu, Alexis D Franklin, Paula Assakura Miyazaki, Anna Bartlett, Andrew I Aldridge, Minh Vu, Lara Boggeman, Conor Fitzpatrick, Joseph R Nery, Rosa G Castanon, Mohammad Rashid, Matthew W Jacobs, Tony Ito-Cole, Carolyn O'Connor, António Pinto-Duarte, Bertha Dominguez, Jared B Smith, Sheng-Yong Niu, Kuo-Fen Lee, Xin Jin, Eran A Mukamel, M Margarita Behrens, Joseph R Ecker, Edward M Callaway
Epigenomic diversity of cortical projection neurons in the mouse brain. Nature 598 (7879) (2021)
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian, Brian E Kalmbach, Megan Crow, Rebecca D Hodge, Fenna M Krienen, Staci A Sorensen, Jeroen Eggermont, Zizhen Yao, Brian D Aevermann, Andrew I Aldridge, Anna Bartlett, Darren Bertagnolli, Tamara Casper, Rosa G Castanon, Kirsten Crichton, Tanya L Daigle, Rachel Dalley, Nick Dee, Nikolai C Dembrow, Dinh Diep, Song-Lin Ding, Weixiu Dong, Rongxin Fang, Stephan Fischer, Melissa Goldman, Jeff Goldy, Lucas T Gray, Brian R Herb, Xiaomeng Hou, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Baldur van Lew, Yang Eric Li, Christine S Liu, Hanqing Liu, Jacinta D Lucero, Anup A Mahurkar, Delissa McMillen, Jeremy A Miller, Marmar Moussa, Joseph R Nery, Philip R Nicovich, Sheng-Yong Niu, Joshua Orvis, Julia K Osteen, Scott Owen, Carter R Palmer, Trangthanh H Pham, Nongluk Plongthongkum, Olivier Poirion, Nora M Reed, Christine Rimorin, Angeline Rivkin, William J Romanow, Adriana E Sedeño-Cortés, Kimberly Siletti, Saroja Somasundaram, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Xinxin Wang, Fangming Xie, Anna Marie Yanny, Renee Zhang, Seth A Ament, M Margarita Behrens, Hector Corrada Bravo, Jerold Chun, Alexander Dobin, Jesse Gillis, Ronna Hertzano, Patrick R Hof, Thomas Höllt, Gregory D Horwitz, C Dirk Keene, Peter V Kharchenko, Andrew L Ko, Boudewijn P F Lelieveldt, Chongyuan Luo, Eran A Mukamel, António Pinto-Duarte, Sebastian Preissl, Aviv Regev, Bing Ren, Richard H Scheuermann, Kimberly A Smith, William J Spain, Owen R White, Christof Koch, Michael J Hawrylycz, Bosiljka Tasic, Evan Z Macosko, Steven A McCarroll, Jonathan T Ting, Hongkui Zeng, Kun Zhang, Guoping Feng, Joseph R Ecker, Sten Linnarsson, Ed S Lein
Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature 598 (7879) (2021)
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S Adkins, Andrew I Aldridge, Seth A Ament, Anna Bartlett, M Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Hector Roux de Bezieux, Tommaso Biancalani, Ali Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather H Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L Dougherty, Wayne I Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle G Giglio, Jeff Goldy, Michael J Hawrylycz, Brian R Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D Lucero, Chongyuan Luo, Anup A Mahurkar, Delissa McMillen, Naeem M Nadaf, Joseph R Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia K Osteen, Trangthanh H Pham, António Pinto-Duarte, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C Rivkin, Kimberly A Smith, Kelly Street, Josef Sulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles R Vanderburg, Cindy T J van Velthoven, Xinxin Wang, Owen R White, Z Josh Huang, Peter V Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D Welch, Jesse Gillis, Evan Z Macosko, Bing Ren, Joseph R Ecker, Hongkui Zeng, Eran A Mukamel
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature 598 (7879) (2021)
Yang Eric Li, Sebastian Preissl, Xiaomeng Hou, Ziyang Zhang, Kai Zhang, Yunjiang Qiu, Olivier B Poirion, Bin Li, Joshua Chiou, Hanqing Liu, António Pinto-Duarte, Naoki Kubo, Xiaoyu Yang, Rongxin Fang, Xinxin Wang, Jee Yun Han, Jacinta Lucero, Yiming Yan, Michael Miller, Samantha Kuan, David Gorkin, Kyle J Gaulton, Yin Shen, Michael Nunn, Eran A Mukamel, M Margarita Behrens, Joseph R Ecker, Bing Ren
An atlas of gene regulatory elements in adult mouse cerebrum. Nature 598 (7879) (2021)
Hanqing Liu, Jingtian Zhou, Wei Tian, Chongyuan Luo, Anna Bartlett, Andrew I Aldridge, Jacinta Lucero, Julia K Osteen, Joseph R Nery, Huaming Chen, Angeline Rivkin, Rosa G Castanon, Ben Clock, Yang Eric Li, Xiaomeng Hou, Olivier B Poirion, Sebastian Preissl, António Pinto-Duarte, Carolyn O'Connor, Lara Boggeman, Conor Fitzpatrick, Michael Nunn, Eran A Mukamel, Zhuzhu Zhang, Edward M Callaway, Bing Ren, Jesse R Dixon, M Margarita Behrens, Joseph R Ecker
DNA methylation atlas of the mouse brain at single-cell resolution. Nature 598 (7879) (2021)
Alexey Kozlenkov, Marit W Vermunt, Pasha Apontes, Junhao Li, Ke Hao, Chet C Sherwood, Patrick R Hof, John J Ely, Michael Wegner, Eran A Mukamel, Menno P Creyghton, Eugene V Koonin, Stella Dracheva
Evolution of regulatory signatures in primate cortical neurons at cell-type resolution. Proceedings of the National Academy of Sciences of the United States of America 117 (45) (2020)
Laura D Lewis, Giovanni Piantoni, Robert A Peterfreund, Emad N Eskandar, Priscilla Grace Harrell, Oluwaseun Akeju, Linda S Aglio, Sydney S Cash, Emery N Brown, Eran A Mukamel, Patrick L Purdon
A transient cortical state with sleep-like sensory responses precedes emergence from general anesthesia in humans. eLife 7 (2018)
Tie-Yuan Zhang, Christopher L Keown, Xianglan Wen, Junhao Li, Dulcie A Vousden, Christoph Anacker, Urvashi Bhattacharyya, Richard Ryan, Josie Diorio, Nicholas O'Toole, Jason P Lerch, Eran A Mukamel, Michael J Meaney
Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus. Nature communications 9 (1) (2018)
Alexey Kozlenkov, Jun-Hao Li, Pasha Apontes, Yasmin L Hurd, William M Byne, Eugene V Koonin, Michael Wegner, Eran A Mukamel, Stella Dracheva
A unique role for DNA (hydroxy)methylation in epigenetic regulation of human inhibitory neurons. Science advances 4 (9) (2018)
Chongyuan Luo, Christopher L Keown, Laurie Kurihara, Jingtian Zhou, Yupeng He, Jun-Hao Li, Rosa Gomez Castanon, Jacinta Lucero, Joseph R Nery, Justin P Sandoval, Brian Bui, Terrence J Sejnowski, Timothy T Harkins, Eran A Mukamel, M Margarita Behrens, Joseph R Ecker
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex. Science (New York, N.Y.) 357 (6351) (2017)
Christopher L Keown, Joel B Berletch, Rosa Castanon, Joseph R Nery, Christine M Disteche, Joseph R Ecker, Eran A Mukamel
Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain. Proceedings of the National Academy of Sciences of the United States of America 114 (14) (2017)

Eran A Mukamel

Publication Activity (10 Years)

Top Topics

Top Venues