Handuo Shi

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 12

Top Topics

Pluripotent Stem Cells

Escherichia Coli

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Handuo Shi, Daniel P Newton, Taylor H Nguyen, Sylvie Estrela, Juan Sanchez, Michael Tu, Po-Yi Ho, Qinglin Zeng, Brian C DeFelice, Justin L Sonnenburg, Kerwyn Casey Huang
Nutrient competition predicts gut microbiome restructuring under drug perturbations. bioRxiv : the preprint server for biology (2024)
Dari Shalon, Rebecca Neal Culver, Jessica A Grembi, Jacob Folz, Peter V Treit, Handuo Shi, Florian A Schober, Les Dethlefsen, Xiandong Meng, Eitan Yaffe, Andrés Aranda-Díaz, Philipp E Geyer, Johannes B Mueller-Reif, Sean Paul Spencer, Andrew D Patterson, George Triadafilopoulos, Susan P Holmes, Matthias Mann, Oliver Fiehn, David A Relman, Kerwyn Casey Huang
Profiling the human intestinal environment under physiological conditions. Nature (2023)
Dari Shalon, Rebecca Neal Culver, Jessica A Grembi, Jacob Folz, Peter V Treit, Handuo Shi, Florian A Schober, Les Dethlefsen, Xiandong Meng, Eitan Yaffe, Andrés Aranda-Díaz, Philipp E Geyer, Johannes B Mueller-Reif, Sean Paul Spencer, Andrew D Patterson, George Triadafilopoulos, Susan P Holmes, Matthias Mann, Oliver Fiehn, David A Relman, Kerwyn Casey Huang
Profiling the human intestinal environment under physiological conditions. Nature (2023)
Dari Shalon, Rebecca Neal Culver, Jessica A Grembi, Jacob Folz, Peter V Treit, Handuo Shi, Florian A Schober, Les Dethlefsen, Xiandong Meng, Eitan Yaffe, Andrés Aranda-Díaz, Philipp E Geyer, Johannes B Mueller-Reif, Sean Paul Spencer, Andrew D Patterson, George Triadafilopoulos, Susan P Holmes, Matthias Mann, Oliver Fiehn, David A Relman, Kerwyn Casey Huang
Profiling the human intestinal environment under physiological conditions. Nature 617 (7961) (2023)
Natasha K Dudek, Jesus G Galaz-Montoya, Handuo Shi, Megan Mayer, Cristina Danita, Arianna I Celis, Tobias Viehboeck, Gong-Her Wu, Barry Behr, Silvia Bulgheresi, Kerwyn Casey Huang, Wah Chiu, David A Relman
Previously uncharacterized rectangular bacterial structures in the dolphin mouth. Nature communications 14 (1) (2023)
Dari Shalon, Rebecca Neal Culver, Jessica A Grembi, Jacob Folz, Peter V Treit, Handuo Shi, Florian A Schober, Les Dethlefsen, Xiandong Meng, Eitan Yaffe, Andrés Aranda-Díaz, Philipp E Geyer, Johannes B Mueller-Reif, Sean Paul Spencer, Andrew D Patterson, George Triadafilopoulos, Susan P Holmes, Matthias Mann, Oliver Fiehn, David A Relman, Kerwyn Casey Huang
Profiling the human intestinal environment under physiological conditions. Nature 617 (7961) (2023)
Dari Shalon, Rebecca Neal Culver, Jessica A Grembi, Jacob Folz, Peter V Treit, Handuo Shi, Florian A Schober, Les Dethlefsen, Xiandong Meng, Eitan Yaffe, Andrés Aranda-Díaz, Philipp E Geyer, Johannes B Mueller-Reif, Sean Paul Spencer, Andrew D Patterson, George Triadafilopoulos, Susan P Holmes, Matthias Mann, Oliver Fiehn, David A Relman, Kerwyn Casey Huang
Profiling the human intestinal environment under physiological conditions. Nature 617 (7961) (2023)
Handuo Shi, Corey S Westfall, Jesse Kao, Pascal D Odermatt, Sarah E Anderson, Spencer Cesar, Montana Sievert, Jeremy Philippe Moore, Carlos G Gonzalez, Lichao Zhang, Joshua E Elias, Fred Chang, Kerwyn Casey Huang, Petra Anne Levin
Starvation induces shrinkage of the bacterial cytoplasm. Proceedings of the National Academy of Sciences of the United States of America 118 (24) (2021)
Handuo Shi, Yan Hu, Pascal D Odermatt, Carlos G Gonzalez, Lichao Zhang, Joshua E Elias, Fred Chang, Kerwyn Casey Huang
Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments. Nature communications 12 (1) (2021)
Melanie R Silvis, Manohary Rajendram, Handuo Shi, Hendrik Osadnik, Andrew N Gray, Spencer Cesar, Jason M Peters, Cameron C Hearne, Parth Kumar, Horia Todor, Kerwyn Casey Huang, Carol A Gross
Morphological and Transcriptional Responses to CRISPRi Knockdown of Essential Genes in Escherichia coli. mBio 12 (5) (2021)
Esha Atolia, Spencer Cesar, Heidi A Arjes, Manohary Rajendram, Handuo Shi, Benjamin D Knapp, Somya Khare, Andrés Aranda-Díaz, Richard E Lenski, Kerwyn Casey Huang
Environmental and Physiological Factors Affecting High-Throughput Measurements of Bacterial Growth. mBio 11 (5) (2020)
Jacqueline Grimm, Handuo Shi, Wei Wang, Angela M Mitchell, Ned S Wingreen, Kerwyn Casey Huang, Thomas J Silhavy
The inner membrane protein YhdP modulates the rate of anterograde phospholipid flow in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 117 (43) (2020)