Justin L Sonnenburg (Justin Sonnenburg, J L Sonnenburg)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Topics

Clostridium Difficile

Top Venues

Nature microbiology

Infection and immunity

Nature communications

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology (2024)
Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology 9 (1) (2024)
Shuo Han, Emma R Guiberson, Yuxin Li, Justin L Sonnenburg
High-throughput identification of gut microbiome-dependent metabolites. Nature protocols 19 (7) (2024)
Shuo Han, Emma R Guiberson, Yuxin Li, Justin L Sonnenburg
High-throughput identification of gut microbiome-dependent metabolites. Nature protocols 19 (7) (2024)
Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology 9 (1) (2024)
Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology 9 (1) (2024)
Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology 9 (1) (2024)
Handuo Shi, Daniel P Newton, Taylor H Nguyen, Sylvie Estrela, Juan Sanchez, Michael Tu, Po-Yi Ho, Qinglin Zeng, Brian C DeFelice, Justin L Sonnenburg, Kerwyn Casey Huang
Nutrient competition predicts gut microbiome restructuring under drug perturbations. bioRxiv : the preprint server for biology (2024)
Rebecca Neal Culver, Sean Paul Spencer, Arvie Violette, Evelyn Giselle Lemus Silva, Tadashi Takeuchi, Ceena D Nafarzadegan, Steven K Higginbottom, Dari Shalon, Justin L Sonnenburg, Kerwyn Casey Huang
Improved mouse models of the small intestine microbiota using region-specific sampling from humans. bioRxiv : the preprint server for biology (2024)
Shuo Han, Emma R Guiberson, Yuxin Li, Justin L Sonnenburg
High-throughput identification of gut microbiome-dependent metabolites. Nature protocols 19 (7) (2024)
Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology 9 (1) (2024)
Shuo Han, Emma R Guiberson, Yuxin Li, Justin L Sonnenburg
High-throughput identification of gut microbiome-dependent metabolites. Nature protocols (2024)
Rebecca Neal Culver, Sean Paul Spencer, Arvie Violette, Evelyn Giselle Lemus Silva, Tadashi Takeuchi, Ceena D Nafarzadegan, Steven K Higginbottom, Dari Shalon, Justin L Sonnenburg, Kerwyn Casey Huang
Improved mouse models of the small intestine microbiota using region-specific sampling from humans. bioRxiv : the preprint server for biology (2024)
Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology 9 (1) (2024)
Craig A Hill, Benjamin W Casterline, Ezequiel Valguarnera, Aaron L Hecht, Elizabeth Stanley Shepherd, Justin L Sonnenburg, Juliane Bubeck Wardenburg
Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut. Nature microbiology 9 (1) (2024)
Kali M Pruss, Haoqing Chen, Yuanyuan Liu, William Van Treuren, Steven K Higginbottom, John B Jarman, Curt R Fischer, Justin Mak, Beverly Wong, Tina M Cowan, Michael A Fischbach, Justin L Sonnenburg, Dylan Dodd
Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid. Nature communications 14 (1) (2023)
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Steven K Higginbottom, Matthew M Carter, Benjamin Schumann, Carolyn R Bertozzi, Victoria Anikst, Cody Martin, Elizabeth V Robilotti, Jo May Chow, Rachael H Buck, Lucy S Tompkins, Justin L Sonnenburg, Andrew J Hryckowian
Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates. Infection and immunity 91 (2) (2023)
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Steven K Higginbottom, Matthew M Carter, Benjamin Schumann, Carolyn R Bertozzi, Victoria Anikst, Cody Martin, Elizabeth V Robilotti, Jo May Chow, Rachael H Buck, Lucy S Tompkins, Justin L Sonnenburg, Andrew J Hryckowian
Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates. Infection and immunity 91 (2) (2023)
Kali M Pruss, Haoqing Chen, Yuanyuan Liu, William Van Treuren, Steven K Higginbottom, John B Jarman, Curt R Fischer, Justin Mak, Beverly Wong, Tina M Cowan, Michael A Fischbach, Justin L Sonnenburg, Dylan Dodd
Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid. Nature communications 14 (1) (2023)
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Steven K Higginbottom, Matthew M Carter, Benjamin Schumann, Carolyn R Bertozzi, Victoria Anikst, Cody Martin, Elizabeth V Robilotti, Jo May Chow, Rachael H Buck, Lucy S Tompkins, Justin L Sonnenburg, Andrew J Hryckowian
Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates. Infection and immunity 91 (2) (2023)
Kali M Pruss, Haoqing Chen, Yuanyuan Liu, William Van Treuren, Steven K Higginbottom, John B Jarman, Curt R Fischer, Justin Mak, Beverly Wong, Tina M Cowan, Michael A Fischbach, Justin L Sonnenburg, Dylan Dodd
Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid. Nature communications 14 (1) (2023)
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Steven K Higginbottom, Matthew M Carter, Benjamin Schumann, Carolyn R Bertozzi, Victoria Anikst, Cody Martin, Elizabeth V Robilotti, Jo May Chow, Rachael H Buck, Lucy S Tompkins, Justin L Sonnenburg, Andrew J Hryckowian
Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates. Infection and immunity (2023)
Kali M Pruss, Haoqing Chen, Yuanyuan Liu, William Van Treuren, Steven K Higginbottom, John B Jarman, Curt R Fischer, Justin Mak, Beverly Wong, Tina M Cowan, Michael A Fischbach, Justin L Sonnenburg, Dylan Dodd
Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid. Nature communications 14 (1) (2023)
Rebecca H Gellman, Matthew R Olm, Nicolas Terrapon, Fatima Enam, Steven K Higginbottom, Justin L Sonnenburg, Erica D Sonnenburg
Hadza Prevotella Require Diet-derived Microbiota Accessible Carbohydrates to Persist in Mice. bioRxiv : the preprint server for biology (2023)
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Steven K Higginbottom, Matthew M Carter, Benjamin Schumann, Carolyn R Bertozzi, Victoria Anikst, Cody Martin, Elizabeth V Robilotti, Jo May Chow, Rachael H Buck, Lucy S Tompkins, Justin L Sonnenburg, Andrew J Hryckowian
Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates. Infection and immunity 91 (2) (2023)
Kali M Pruss, Haoqing Chen, Yuanyuan Liu, William Van Treuren, Steven K Higginbottom, John B Jarman, Curt R Fischer, Justin Mak, Beverly Wong, Tina M Cowan, Michael A Fischbach, Justin L Sonnenburg, Dylan Dodd
Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid. Nature communications 14 (1) (2023)
Leah Guthrie, Justin L Sonnenburg, Michael A Fischbach, Timothy W Meyer
A Limited Effect of Chronic Renal Insufficiency on the Colon Microbiome. Journal of the American Society of Nephrology : JASN (2023)
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Steven K Higginbottom, Matthew M Carter, Benjamin Schumann, Carolyn R Bertozzi, Victoria Anikst, Cody Martin, Elizabeth V Robilotti, Jo May Chow, Rachael H Buck, Lucy S Tompkins, Justin L Sonnenburg, Andrew J Hryckowian
Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates. Infection and immunity 91 (2) (2023)
Kali M Pruss, Haoqing Chen, Yuanyuan Liu, William Van Treuren, Steven K Higginbottom, John B Jarman, Curt R Fischer, Justin Mak, Beverly Wong, Tina M Cowan, Michael A Fischbach, Justin L Sonnenburg, Dylan Dodd
Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid. Nature communications 14 (1) (2023)
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Steven K Higginbottom, Matthew M Carter, Benjamin Schumann, Carolyn R Bertozzi, Victoria Anikst, Cody Martin, Elizabeth V Robilotti, Jo May Chow, Rachael H Buck, Lucy S Tompkins, Justin L Sonnenburg, Andrew J Hryckowian
Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates. Infection and immunity 91 (2) (2023)
Kali M Pruss, Fatima Enam, Eric Battaglioli, Mary DeFeo, Oscar R Diaz, Steven K Higginbottom, Curt R Fischer, Andrew J Hryckowian, William Van Treuren, Dylan Dodd, Purna Kashyap, Justin L Sonnenburg
Oxidative ornithine metabolism supports non-inflammatory C. difficile colonization. Nature metabolism 4 (1) (2022)
Matthew R Olm, Dylan Dahan, Matthew M Carter, Bryan D Merrill, Feiqiao Brian Yu, Sunit Jain, Xiandong Meng, Surya Tripathi, Hannah Wastyk, Norma Neff, Susan P Holmes, Erica D Sonnenburg, Aashish R Jha, Justin L Sonnenburg
Robust variation in infant gut microbiome assembly across a spectrum of lifestyles. Science (New York, N.Y.) 376 (6598) (2022)
Kali M Pruss, Justin L Sonnenburg
C. difficile exploits a host metabolite produced during toxin-mediated disease. Nature 593 (7858) (2021)
Shuo Han, Will Van Treuren, Curt R Fischer, Bryan D Merrill, Brian C DeFelice, Juan M Sanchez, Steven K Higginbottom, Leah Guthrie, Lalla A Fall, Dylan Dodd, Michael A Fischbach, Justin L Sonnenburg
A metabolomics pipeline for the mechanistic interrogation of the gut microbiome. Nature 595 (7867) (2021)
Chun-Jun Guo, Breanna M Allen, Kamir J Hiam-Galvez, Dylan Dodd, Will Van Treuren, Steven K Higginbottom, Kazuki Nagashima, Curt R Fischer, Justin L Sonnenburg, Matthew H Spitzer, Michael A Fischbach
Depletion of microbiome-derived molecules in the host using Clostridium genetics. Science (New York, N.Y.) 366 (6471) (2020)
Justin L Sonnenburg, Erica D Sonnenburg
Vulnerability of the industrialized microbiota. Science (New York, N.Y.) 366 (6464) (2020)
Kirk Bergstrom, Xindi Shan, David Casero, Albert Batushansky, Venu Lagishetty, Jonathan Patrick Jacobs, Christopher Hoover, Yuji Kondo, Bojing Shao, Liang Gao, Wesley F Zandberg, Benjamin Noyovitz, J Michael McDaniel, Deanna L Gibson, Sepideh Pakpour, Negin Kazemian, Samuel McGee, Courtney W Houchen, Chinthalapally V Rao, Timothy M Griffin, Justin L Sonnenburg, Rodger P McEver, Jonathan Braun, Lijun Xia
Proximal colon-derived O-glycosylated mucus encapsulates and modulates the microbiota. Science (New York, N.Y.) 370 (6515) (2020)
Erica D Sonnenburg, Justin L Sonnenburg
The ancestral and industrialized gut microbiota and implications for human health. Nature reviews. Microbiology 17 (6) (2020)
Nathan T Porter, Andrew J Hryckowian, Bryan D Merrill, Jaime J Fuentes, Jackson O Gardner, Robert W P Glowacki, Shaleni Singh, Ryan D Crawford, Evan S Snitkin, Justin L Sonnenburg, Eric C Martens
Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron. Nature microbiology 5 (9) (2020)
K M Pruss, A Marcobal, A M Southwick, D Dahan, S A Smits, J A Ferreyra, S K Higginbottom, E D Sonnenburg, P C Kashyap, B Choudhury, L Bode, Justin L Sonnenburg
Mucin-derived O-glycans supplemented to diet mitigate diverse microbiota perturbations. The ISME journal 15 (2) (2020)
Carlos G Gonzalez, Hannah C Wastyk, Madeline Topf, Christopher D Gardner, Justin L Sonnenburg, Joshua E Elias
High-Throughput Stool Metaproteomics: Method and Application to Human Specimens. mSystems 5 (3) (2020)
Eric J Battaglioli, Vanessa L Hale, Jun Chen, Patricio R Jeraldo, Coral Ruiz-Mojica, Bradley A Schmidt, Vayu M Rekdal, Lisa M Till, Lutfi M Huq, Samuel A Smits, William J Moor, Yava L Jones-Hall, Thomas C Smyrk, Sahil Khanna, Darrell S Pardi, Madhusudan Grover, Robin Patel, Nicholas Chia, Heidi Nelson, Justin L Sonnenburg, Gianrico Farrugia, Purna C Kashyap
Clostridioides difficile uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea. Science translational medicine 10 (464) (2019)
Payal Joglekar, Hua Ding, Pablo Canales-Herrerias, Pankaj Jay Pasricha, Justin L Sonnenburg, Daniel A Peterson
Intestinal IgA Regulates Expression of a Fructan Polysaccharide Utilization Locus in Colonizing Gut Commensal Bacteroides thetaiotaomicron. mBio 10 (6) (2019)
Payal Joglekar, Erica D Sonnenburg, Steven K Higginbottom, Kristen A Earle, Carl Morland, Sarah Shapiro-Ward, David N Bolam, Justin L Sonnenburg
Genetic Variation of the SusC/SusD Homologs from a Polysaccharide Utilization Locus Underlies Divergent Fructan Specificities and Functional Adaptation in Bacteroides thetaiotaomicron Strains. mSphere 3 (3) (2018)
Andrew J Hryckowian, William Van Treuren, Samuel A Smits, Nicole M Davis, Jackson O Gardner, Donna M Bouley, Justin L Sonnenburg
Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model. Nature microbiology 3 (6) (2018)
Samuel A Smits, Jeff Leach, Erica D Sonnenburg, Carlos G Gonzalez, Joshua S Lichtman, Gregor Reid, Rob Knight, Alphaxard Manjurano, John Changalucha, Joshua E Elias, Maria Gloria Dominguez-Bello, Justin L Sonnenburg
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania. Science (New York, N.Y.) 357 (6353) (2017)