Jae Kyoung Kim

ResearcherID Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 48

Top Venues

PLoS computational biology

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

NPJ systems biology and applications

Korea Advanced Institute of Science and Technology

University of Michigan (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Korea Advanced Institute of Science and Technology Sep 01 2018

South Korea

Associate Professor :: Department of Mathematical Sciences

Korea Advanced Institute of Science and Technology May 01 2015

South Korea

Assitant Professor :: Mathematical Sciences

The Ohio State University Sep 01 2013 - Aug 30 2015

United States

Postdoctoral Fellow :: Mathematical Biosciences Institute

Education History

University of Michigan Sep 01 2008 - Aug 31 2013

United States

PHD :: Applied and Interdisciplinary Mathematics

Publications

Seolah Shin, Seok Joo Chae, Seunggyu Lee, Jae Kyoung Kim
Beyond homogeneity: Assessing the validity of the Michaelis-Menten rate law in spatially heterogeneous environments. PLoS computational biology 20 (6) (2024)
Jong Hyuk Byun, Hye Seon Jeon, Hwi-Yeol Yun, Jae Kyoung Kim
Validity conditions of approximations for a target-mediated drug disposition model: A novel first-order approximation and its comparison to other approximations. PLoS computational biology 20 (4) (2024)
Yuta Otobe, Eui Min Jeong, Shunsuke Ito, Yuta Shinohara, Nobuhiro Kurabayashi, Atsu Aiba, Yoshitaka Fukada, Jae Kyoung Kim, Hikari Yoshitane
Phosphorylation of DNA-binding domains of CLOCK-BMAL1 complex for PER-dependent inhibition in circadian clock of mammalian cells. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Jong Hyuk Byun, Hye Seon Jeon, Hwi-Yeol Yun, Jae Kyoung Kim
Validity conditions of approximations for a target-mediated drug disposition model: A novel first-order approximation and its comparison to other approximations. PLoS computational biology 20 (4) (2024)
Hyun Kim, Won Chang, Seok Joo Chae, Jong-Eun Park, Minseok Seo, Jae Kyoung Kim
scLENS: data-driven signal detection for unbiased scRNA-seq data analysis. Nature communications 15 (1) (2024)
Yuta Otobe, Eui Min Jeong, Shunsuke Ito, Yuta Shinohara, Nobuhiro Kurabayashi, Atsu Aiba, Yoshitaka Fukada, Jae Kyoung Kim, Hikari Yoshitane
Phosphorylation of DNA-binding domains of CLOCK-BMAL1 complex for PER-dependent inhibition in circadian clock of mammalian cells. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Pan Li, Jae Kyoung Kim
Circadian regulation of sinoatrial nodal cell pacemaking function: Dissecting the roles of autonomic control, body temperature, and local circadian rhythmicity. PLoS computational biology 20 (2) (2024)
Pan Li, Jae Kyoung Kim
Circadian regulation of sinoatrial nodal cell pacemaking function: Dissecting the roles of autonomic control, body temperature, and local circadian rhythmicity. PLoS computational biology 20 (2) (2024)
Seolah Shin, Seok Joo Chae, Seunggyu Lee, Jae Kyoung Kim
Beyond homogeneity: Assessing the validity of the Michaelis-Menten rate law in spatially heterogeneous environments. PLoS computational biology 20 (6) (2024)
Hyun Kim, Won Chang, Seok Joo Chae, Jong-Eun Park, Minseok Seo, Jae Kyoung Kim
scLENS: data-driven signal detection for unbiased scRNA-seq data analysis. Nature communications 15 (1) (2024)
Eui Min Jeong, Jae Kyoung Kim
A robust ultrasensitive transcriptional switch in noisy cellular environments. NPJ systems biology and applications 10 (1) (2024)
Eui Min Jeong, Jae Kyoung Kim
A robust ultrasensitive transcriptional switch in noisy cellular environments. NPJ systems biology and applications 10 (1) (2024)
Seolah Shin, Seok Joo Chae, Seunggyu Lee, Jae Kyoung Kim
Beyond homogeneity: Assessing the validity of the Michaelis-Menten rate law in spatially heterogeneous environments. PLoS computational biology 20 (6) (2024)
Jong Hyuk Byun, Hye Seon Jeon, Hwi-Yeol Yun, Jae Kyoung Kim
Validity conditions of approximations for a target-mediated drug disposition model: A novel first-order approximation and its comparison to other approximations. PLoS computational biology 20 (4) (2024)
Pan Li, Jae Kyoung Kim
Circadian regulation of sinoatrial nodal cell pacemaking function: Dissecting the roles of autonomic control, body temperature, and local circadian rhythmicity. PLoS computational biology 20 (2) (2024)
Pan Li, Jae Kyoung Kim
Circadian regulation of sinoatrial nodal cell pacemaking function: Dissecting the roles of autonomic control, body temperature, and local circadian rhythmicity. PLoS computational biology 20 (2) (2024)
Seolah Shin, Seok Joo Chae, Seunggyu Lee, Jae Kyoung Kim
Beyond homogeneity: Assessing the validity of the Michaelis-Menten rate law in spatially heterogeneous environments. PLoS computational biology 20 (6) (2024)
Yuta Otobe, Eui Min Jeong, Shunsuke Ito, Yuta Shinohara, Nobuhiro Kurabayashi, Atsu Aiba, Yoshitaka Fukada, Jae Kyoung Kim, Hikari Yoshitane
Phosphorylation of DNA-binding domains of CLOCK-BMAL1 complex for PER-dependent inhibition in circadian clock of mammalian cells. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Eui Min Jeong, Jae Kyoung Kim
A robust ultrasensitive transcriptional switch in noisy cellular environments. NPJ systems biology and applications 10 (1) (2024)
Jong Hyuk Byun, Hye Seon Jeon, Hwi-Yeol Yun, Jae Kyoung Kim
Validity conditions of approximations for a target-mediated drug disposition model: A novel first-order approximation and its comparison to other approximations. PLoS computational biology 20 (4) (2024)
Yuta Otobe, Eui Min Jeong, Shunsuke Ito, Yuta Shinohara, Nobuhiro Kurabayashi, Atsu Aiba, Yoshitaka Fukada, Jae Kyoung Kim, Hikari Yoshitane
Phosphorylation of DNA-binding domains of CLOCK-BMAL1 complex for PER-dependent inhibition in circadian clock of mammalian cells. Proceedings of the National Academy of Sciences of the United States of America 121 (23) (2024)
Se Ho Park, Seokmin Ha, Jae Kyoung Kim
A general model-based causal inference method overcomes the curse of synchrony and indirect effect. Nature communications 14 (1) (2023)
Minki P Lee, Kien Hoang, Sungkyu Park, Yun Min Song, Eun Yeon Joo, Won Chang, Jee Hyun Kim, Jae Kyoung Kim
Imputing missing sleep data from wearables with neural networks in real-world settings. Sleep (2023)
Yun Min Song, Su Jung Choi, Se Ho Park, Soo Jin Lee, Eun Yeon Joo, Jae Kyoung Kim
A real-time, personalized sleep intervention using mathematical modelling and wearable devices. Sleep (2023)
Bryan S Hernandez, Patrick Vincent N Lubenia, Matthew D Johnston, Jae Kyoung Kim
A framework for deriving analytic steady states of biochemical reaction networks. PLoS computational biology 19 (4) (2023)
Seokmin Ha, Su Jung Choi, Sujin Lee, Reinatt Hansel Wijaya, Jee Hyun Kim, Eun Yeon Joo, Jae Kyoung Kim
Predicting the Risk of Sleep Disorders Using a Machine Learning-Based Simple Questionnaire: Development and Validation Study. Journal of medical Internet research 25 (2023)
Eui Min Jeong, Miri Kwon, Eunjoo Cho, Sang Hyuk Lee, Hyun Kim, Eun Young Kim, Jae Kyoung Kim
Systematic modeling-driven experiments identify distinct molecular clockworks underlying hierarchically organized pacemaker neurons. Proceedings of the National Academy of Sciences of the United States of America 119 (8) (2022)
Yasuko O Abe, Hikari Yoshitane, Dae Wook Kim, Satoshi Kawakami, Michinori Koebis, Kazuki Nakao, Atsu Aiba, Jae Kyoung Kim, Yoshitaka Fukada
Rhythmic transcription of Bmal1 stabilizes the circadian timekeeping system in mammals. Nature communications 13 (1) (2022)
Dae Wook Kim, Hyukpyo Hong, Jae Kyoung Kim
Systematic inference identifies a major source of heterogeneity in cell signaling dynamics: The rate-limiting step number. Science advances 8 (11) (2022)
Ngoc-Anh Thi Vu, Yun Min Song, Quyen Thi Tran, Hwi-Yeol Yun, Sang Kyum Kim, Jung-Woo Chae, Jae Kyoung Kim
Beyond the Michaelis-Menten: Accurate Prediction of Drug Interactions through Cytochrome P450 3A4 Induction. Clinical pharmacology and therapeutics (2022)
Hyukpyo Hong, Ji Yun Noh, Hyojung Lee, Sunhwa Choi, Boseung Choi, Jae Kyoung Kim, Eui-Cheol Shin
Modeling Incorporating the Severity-Reducing Long-term Immunity: Higher Viral Transmission Paradoxically Reduces Severe COVID-19 During Endemic Transition. Immune network 22 (3) (2022)
Miao Lin Pay, Dae Wook Kim, David E Somers, Jae Kyoung Kim, Mathias Foo
Modelling of plant circadian clock for characterizing hypocotyl growth under different light quality conditions. In silico plants 4 (1) (2022)
Eui Min Jeong, Yun Min Song, Jae Kyoung Kim
Combined multiple transcriptional repression mechanisms generate ultrasensitivity and oscillations. Interface focus 12 (3) (2022)
Ngoc-Anh Thi Vu, Yun Min Song, Quyen Thi Tran, Hwi-Yeol Yun, Sang Kyum Kim, Jung-Woo Chae, Jae Kyoung Kim
Beyond the Michaelis-Menten: Accurate Prediction of Drug Interactions through Cytochrome P450 3A4 Induction. Clinical pharmacology and therapeutics (2022)
Hyukpyo Hong, Jinsu Kim, M Ali Al-Radhawi, Eduardo D Sontag, Jae Kyoung Kim
Derivation of stationary distributions of biochemical reaction networks via structure transformation. Communications biology 4 (1) (2021)
Yun Min Song, Hyukpyo Hong, Jae Kyoung Kim
Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities. PLoS computational biology 17 (10) (2021)
Hyun-Moon Back, Hwi-Yeol Yun, Sang Kyum Kim, Jae Kyoung Kim
Beyond the Michaelis-Menten: Accurate Prediction of In Vivo Hepatic Clearance for Drugs With Low KM. Clinical and translational science 13 (6) (2020)
Dae Wook Kim, Cheng Chang, Xian Chen, Angela C Doran, Francois Gaudreault, Travis Wager, George J DeMarco, Jae Kyoung Kim
Systems approach reveals photosensitivity and PER2 level as determinants of clock-modulator efficacy. Molecular systems biology 15 (7) (2020)
Stephen Beesley, Dae Wook Kim, Matthew D'Alessandro, Yuanhu Jin, Kwangjun Lee, Hyunjeong Joo, Yang Young, Robert J Tomko, John Faulkner, Joshua Gamsby, Jae Kyoung Kim, Choogon Lee
Wake-sleep cycles are severely disrupted by diseases affecting cytoplasmic homeostasis. Proceedings of the National Academy of Sciences of the United States of America 117 (45) (2020)
Jae Kyoung Kim, John J Tyson
Misuse of the Michaelis-Menten rate law for protein interaction networks and its remedy. PLoS computational biology 16 (10) (2020)
Shusaku Masuda, Rajesh Narasimamurthy, Hikari Yoshitane, Jae Kyoung Kim, Yoshitaka Fukada, David M Virshup
Mutation of a PER2 phosphodegron perturbs the circadian phosphoswitch. Proceedings of the National Academy of Sciences of the United States of America 117 (20) (2020)
Jae Kyoung Kim, Ye Chen, Andrew J Hirning, Razan N Alnahhas, Krešimir Josić, Matthew R Bennett
Long-range temporal coordination of gene expression in synthetic microbial consortia. Nature chemical biology 15 (11) (2019)
Hang-Hyun Jo, Yeon Jeong Kim, Jae Kyoung Kim, Mathias Foo, David E Somers, Pan-Jun Kim
Waveforms of molecular oscillations reveal circadian timekeeping mechanisms. Communications biology 1 (2018)
JingJing Liu, Xianlin Zou, Tetsuya Gotoh, Anne M Brown, Liang Jiang, Esther L Wisdom, Jae Kyoung Kim, Carla V Finkielstein
Distinct control of PERIOD2 degradation and circadian rhythms by the oncoprotein and ubiquitin ligase MDM2. Science signaling 11 (556) (2018)
Rajesh Narasimamurthy, Sabrina R Hunt, Yining Lu, Jean-Michel Fustin, Hitoshi Okamura, Carrie L Partch, Daniel B Forger, Jae Kyoung Kim, David M Virshup
CK1δ/ε protein kinase primes the PER2 circadian phosphoswitch. Proceedings of the National Academy of Sciences of the United States of America 115 (23) (2018)
Boseung Choi, Grzegorz A Rempala, Jae Kyoung Kim
Beyond the Michaelis-Menten equation: Accurate and efficient estimation of enzyme kinetic parameters. Scientific reports 7 (1) (2017)
Jae Kyoung Kim, Eduardo D Sontag
Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation. PLoS computational biology 13 (6) (2017)
Tetsuya Gotoh, Jae Kyoung Kim, Jingjing Liu, Marian Vila-Caballer, Philip E Stauffer, John J Tyson, Carla V Finkielstein
Model-driven experimental approach reveals the complex regulatory distribution of p53 by the circadian factor Period 2. Proceedings of the National Academy of Sciences of the United States of America 113 (47) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jae Kyoung Kim