James A Cotton

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 19

Top Venues

PLoS neglected tropical diseases

Nature communications

PLoS genetics

eLife

This page only lists publications with an associated author ORCID identifier.

Publications

Senne Heeren, Ilse Maes, Mandy Sanders, Lon-Fye Lye, Vanessa Adaui, Jorge Arevalo, Alejandro Llanos-Cuentas, Lineth Garcia, Philippe Lemey, Stephen M Beverley, James A Cotton, Jean-Claude Dujardin, Frederik Van den Broeck
Diversity and dissemination of viruses in pathogenic protozoa. Nature communications 14 (1) (2023)
Senne Heeren, Ilse Maes, Mandy Sanders, Lon-Fye Lye, Vanessa Adaui, Jorge Arevalo, Alejandro Llanos-Cuentas, Lineth Garcia, Philippe Lemey, Stephen M Beverley, James A Cotton, Jean-Claude Dujardin, Frederik Van den Broeck
Diversity and dissemination of viruses in pathogenic protozoa. Nature communications 14 (1) (2023)
Senne Heeren, Ilse Maes, Mandy Sanders, Lon-Fye Lye, Vanessa Adaui, Jorge Arevalo, Alejandro Llanos-Cuentas, Lineth Garcia, Philippe Lemey, Stephen M Beverley, James A Cotton, Jean-Claude Dujardin, Frederik Van den Broeck
Diversity and dissemination of viruses in pathogenic protozoa. Nature communications 14 (1) (2023)
Tushabe John Vianney, Duncan J Berger, Stephen R Doyle, Geetha Sankaranarayanan, Joel Serubanja, Prossy Kabuubi Nakawungu, Fred Besigye, Richard E Sanya, Nancy Holroyd, Fiona Allan, Emily L Webb, Alison M Elliott, Matthew Berriman, James A Cotton
Genome-wide analysis of Schistosoma mansoni reveals limited population structure and possible praziquantel drug selection pressure within Ugandan hot-spot communities. PLoS neglected tropical diseases 16 (8) (2022)
Adam J Roberts, Han B Ong, Simon Clare, Cordelia Brandt, Katherine Harcourt, Susanne U Franssen, James A Cotton, Nicole Müller-Sienerth, Gavin J Wright
Systematic identification of genes encoding cell surface and secreted proteins that are essential for in vitro growth and infection in Leishmania donovani. PLoS pathogens 18 (2) (2022)
Rodrigo de Paula Baptista, Yiran Li, Adam Sateriale, Karen L Brooks, Alan Tracey, Mandy J Sanders, Brendan Robert E Ansell, Aaron R Jex, Garrett W Cooper, Ethan D Smith, Rui Xiao, Jennifer E Dumaine, Peter Georgeson, Bernard J Pope, Matthew Berriman, Boris Striepen, James A Cotton, Jessica C Kissinger
Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome research (2021)
Duncan J Berger, Thomas Crellen, Poppy H L Lamberton, Fiona Allan, Alan Tracey, Jennifer D Noonan, Narcis B Kabatereine, Edridah M Tukahebwa, Moses Adriko, Nancy Holroyd, Joanne P Webster, Matthew Berriman, James A Cotton
Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration. Nature communications 12 (1) (2021)
Tomas Skalicky, João Marcelo P Alves, Anderson C Morais, Jana Režnarová, Anzhelika Butenko, Julius Lukeš, Myrna G Serrano, Gregory A Buck, Marta M G Teixeira, Erney P Camargo, Mandy Sanders, James A Cotton, Vyacheslav Yurchenko, Alexei Yu Kostygov
Endosymbiont Capture, a Repeated Process of Endosymbiont Transfer with Replacement in Trypanosomatids Angomonas spp. Pathogens (Basel, Switzerland) 10 (6) (2021)
Jessica V Ribado, Nancy J Li, Elizabeth A Thiele, Hil M Lyons, James A Cotton, Adam Weiss, Philippe Tchindebet Ouakou, Tchonfienet Moundai, Hubert Zirimwabagabo, Sarah Anne J Guagliardo, Guillaume Chabot-Couture, Joshua L Proctor
Linked surveillance and genetic data uncovers programmatically relevant geographic scale of Guinea worm transmission in Chad. PLoS neglected tropical diseases 15 (7) (2021)
Frederik Van den Broeck, Nicholas J Savill, Hideo Imamura, Mandy Sanders, Ilse Maes, Sinclair Cooper, David Mateus, Marlene Jara, Vanessa Adaui, Jorge Arévalo, Alejandro Llanos-Cuentas, Lineth Garcia, Elisa Cupolillo, Michael A Miles, Matthew Berriman, Achim Schnaufer, James A Cotton, Jean-Claude Dujardin
Ecological divergence and hybridization of Neotropical Leishmania parasites. Proceedings of the National Academy of Sciences of the United States of America 117 (40) (2020)
Caroline Durrant, Elizabeth A Thiele, Nancy Holroyd, Stephen R Doyle, Guillaume Sallé, Alan Tracey, Geetha Sankaranarayanan, Magda E Lotkowska, Hayley M Bennett, Thomas Huckvale, Zahra Abdellah, Ouakou Tchindebet, Mesfin Wossen, Makoy Samuel Yibi Logora, Cheick Oumar Coulibaly, Adam Weiss, Albrecht I Schulte-Hostedde, Jeremy M Foster, Christopher A Cleveland, Michael J Yabsley, Ernesto Ruiz-Tiben, Matthew Berriman, Mark L Eberhard, James A Cotton
Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis. PLoS neglected tropical diseases 14 (11) (2020)
James A Cotton, Caroline Durrant, Susanne U Franssen, Tesfaye Gelanew, Asrat Hailu, David Mateus, Mandy J Sanders, Matthew Berriman, Petr Volf, Michael A Miles, Matthew Yeo
Genomic analysis of natural intra-specific hybrids among Ethiopian isolates of Leishmania donovani. PLoS neglected tropical diseases 14 (4) (2020)
Susanne U Franssen, Caroline Durrant, Olivia Stark, Bettina Moser, Tim Downing, Hideo Imamura, Jean-Claude Dujardin, Mandy J Sanders, Isabel Mauricio, Michael A Miles, Lionel F Schnur, Charles L Jaffe, Abedelmajeed Nasereddin, Henk Schallig, Matthew Yeo, Tapan Bhattacharyya, Mohammad Z Alam, Matthew Berriman, Thierry Wirth, Gabriele Schönian, James A Cotton
Global genome diversity of the Leishmania donovani complex. eLife 9 (2020)
Megan A Sloan, Karen Brooks, Thomas D Otto, Mandy J Sanders, James A Cotton, Petros Ligoxygakis
Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania. PLoS genetics 15 (11) (2019)
Malgorzata A Domagalska, Hideo Imamura, Mandy Sanders, Frederik Van den Broeck, Narayan Raj Bhattarai, Manu Vanaerschot, Ilse Maes, Erika D'Haenens, Keshav Rai, Suman Rijal, Matthew Berriman, James A Cotton, Jean-Claude Dujardin
Genomes of Leishmania parasites directly sequenced from patients with visceral leishmaniasis in the Indian subcontinent. PLoS neglected tropical diseases 13 (12) (2019)
Ehud Inbar, Jahangheer Shaik, Stefano A Iantorno, Audrey Romano, Chukwunonso O Nzelu, Katherine Owens, Mandy J Sanders, Deborah Dobson, James A Cotton, Michael E Grigg, Stephen M Beverley, David L Sacks
Whole genome sequencing of experimental hybrids supports meiosis-like sexual recombination in Leishmania. PLoS genetics 15 (5) (2019)
Vicky L Hunt, Isheng J Tsai, Avril Coghlan, Adam J Reid, Nancy Holroyd, Bernardo J Foth, Alan Tracey, James A Cotton, Eleanor J Stanley, Helen Beasley, Hayley M Bennett, Karen Brooks, Bhavana Harsha, Rei Kajitani, Arpita Kulkarni, Dorothee Harbecke, Eiji Nagayasu, Sarah Nichol, Yoshitoshi Ogura, Michael A Quail, Nadine Randle, Dong Xia, Norbert W Brattig, Hanns Soblik, Diogo M Ribeiro, Alejandro Sanchez-Flores, Tetsuya Hayashi, Takehiko Itoh, Dee R Denver, Warwick Grant, Jonathan D Stoltzfus, James B Lok, Haruhiko Murayama, Jonathan Wastling, Adrian Streit, Taisei Kikuchi, Mark Viney, Matthew Berriman
The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature genetics 48 (3) (2016)
James A Cotton, Sasisekhar Bennuru, Alexandra Grote, Bhavana Harsha, Alan Tracey, Robin Beech, Stephen R Doyle, Matthew Dunn, Julie C Dunning Hotopp, Nancy Holroyd, Taisei Kikuchi, Olivia Lambert, Amruta Mhashilkar, Prudence Mutowo, Nirvana Nursimulu, Jose M C Ribeiro, Matthew B Rogers, Eleanor Stanley, Lakshmipuram S Swapna, Isheng Jason Tsai, Thomas R Unnasch, Denis Voronin, John Parkinson, Thomas B Nutman, Elodie Ghedin, Matthew Berriman, Sara Lustigman
The genome of Onchocerca volvulus, agent of river blindness. Nature microbiology 2 (2016)
Hideo Imamura, Tim Downing, Frederik Van den Broeck, Mandy J Sanders, Suman Rijal, Shyam Sundar, An Mannaert, Manu Vanaerschot, Maya Berg, Géraldine De Muylder, Franck Dumetz, Bart Cuypers, Ilse Maes, Malgorzata Domagalska, Saskia Decuypere, Keshav Rai, Surendra Uranw, Narayan Raj Bhattarai, Basudha Khanal, Vijay Kumar Prajapati, Smriti Sharma, Olivia Stark, Gabriele Schönian, Harry P de Koning, Luca Settimo, Benoit Vanhollebeke, Syamal Roy, Bart Ostyn, Marleen Boelaert, Louis Maes, Matthew Berriman, Jean-Claude Dujardin, James A Cotton
Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. eLife 5 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

James A Cotton