Jason Ernst (J Ernst)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 29

Top Topics

Transcription Factor

Pluripotent Stem Cells

Dna Methylation

Top Venues

Nature communications

NAR genomics and bioinformatics

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Caesar Z Li, Amin Haghani, Qi Yan, Ake T Lu, Joshua Zhang, Zhe Fei, Jason Ernst, Xiangdong William Yang, Vadim N Gladyshev, Todd R Robeck, Andreas S Chavez, Joseph A Cook, Jonathan L Dunnum, Kenneth Raj, Andrei Seluanov, Vera Gorbunova, Steve Horvath
Epigenetic predictors of species maximum life span and other life-history traits in mammals. Science advances 10 (23) (2024)
Caesar Z Li, Amin Haghani, Qi Yan, Ake T Lu, Joshua Zhang, Zhe Fei, Jason Ernst, Xiangdong William Yang, Vadim N Gladyshev, Todd R Robeck, Andreas S Chavez, Joseph A Cook, Jonathan L Dunnum, Kenneth Raj, Andrei Seluanov, Vera Gorbunova, Steve Horvath
Epigenetic predictors of species maximum life span and other life-history traits in mammals. Science advances 10 (23) (2024)
Ha Vu, Jason Ernst
Universal chromatin state annotation of the mouse genome. Genome biology 24 (1) (2023)
Ha Vu, Jason Ernst
Universal chromatin state annotation of the mouse genome. Genome biology 24 (1) (2023)
Ake T Lu, Z Fei, Amin Haghani, T R Robeck, Joseph Alan Zoller, Caesar Z Li, R Lowe, Q Yan, Joshua Zhang, H Vu, J Ablaeva, Victoria América Acosta-Rodríguez, Danielle M Adams, Javier Almunia, Ajoy Aloysius, R Ardehali, A Arneson, Charles Scott Baker, G Banks, K Belov, N C Bennett, P Black, Daniel T Blumstein, E K Bors, Charles E Breeze, R T Brooke, J L Brown, G G Carter, A Caulton, J M Cavin, L Chakrabarti, I Chatzistamou, H Chen, K Cheng, P Chiavellini, O W Choi, Shannon M Clarke, Lisa Noelle Cooper, Marie-Laurence Cossette, Joanna Day, J DeYoung, S DiRocco, C Dold, E E Ehmke, Candice K Emmons, Stephan Emmrich, E Erbay, C Erlacher-Reid, Chris G Faulkes, Steven H Ferguson, C J Finno, J E Flower, J M Gaillard, E Garde, L Gerber, Vadim N Gladyshev, Vera Gorbunova, Rodolfo G Goya, M J Grant, C B Green, E N Hales, M B Hanson, Daniel William Hart, M Haulena, K Herrick, A N Hogan, Carolyn J Hogg, Timothy Alexander Hore, Taosheng Huang, J C Izpisua Belmonte, Anna J Jasinska, Gareth Jones, E Jourdain, O Kashpur, H Katcher, E Katsumata, V Kaza, Hippokratis Kiaris, M S Kobor, Paweł Kordowitzki, William R Koski, Michael Krützen, S B Kwon, B Larison, S G Lee, M Lehmann, Jean-François Lemaitre, A J Levine, C Li, X Li, A R Lim, D T S Lin, D M Lindemann, T J Little, N Macoretta, D Maddox, C O Matkin, J A Mattison, M McClure, J Mergl, J J Meudt, G A Montano, Khyobeni Mozhui, J Munshi-South, Asieh Naderi, Martina Nagy, Pritika Narayan, P W Nathanielsz, N B Nguyen, C Niehrs, J K O'Brien, Perrie O'Tierney Ginn, D T Odom, Alexander G Ophir, S Osborn, Elaine A Ostrander, K M Parsons, K C Paul, M Pellegrini, Katharina J Peters, A B Pedersen, Jessica L Petersen, Darren W Pietersen, Gabriela M Pinho, Jocelyn Plassais, Jesse R Poganik, N A Prado, P Reddy, Benjamin Rey, Beate R Ritz, Jooke Robbins, M Rodriguez, Jennifer Russell, E Rydkina, Lindsay L Sailer, Adam B Salmon, Akshay Sanghavi, K M Schachtschneider, Dennis Schmitt, T Schmitt, Lars Schomacher, Lawrence B Schook, Karen E Sears, A W Seifert, Andrei Seluanov, A B A Shafer, Dhanansayan Shanmuganayagam, A V Shindyapina, M Simmons, K Singh, I Sinha, J Slone, Russell Grant Snell, E Soltanmaohammadi, Matthew L Spangler, M C Spriggs, L Staggs, N Stedman, K J Steinman, D T Stewart, V J Sugrue, Balazs Szladovits, Joseph S Takahashi, M Takasugi, Emma C Teeling, Michael J Thompson, B Van Bonn, S C Vernes, Diego Villar, H V Vinters, M C Wallingford, N Wang, R K Wayne, Gerald S Wilkinson, C K Williams, R W Williams, Xiangdong William Yang, M Yao, Brent G Young, B Zhang, Z Zhang, Peng Zhao, Y Zhao, W Zhou, Jörg Zimmermann, Jason Ernst, Kenneth Raj, Steve Horvath
Universal DNA methylation age across mammalian tissues. Nature aging (2023)
Ha Vu, Jason Ernst
Universal chromatin state annotation of the mouse genome. Genome biology 24 (1) (2023)
Amin Haghani, Caesar Z Li, Todd R Robeck, Joshua Zhang, Ake T Lu, Julia Ablaeva, Victoria América Acosta-Rodríguez, Danielle M Adams, Abdulaziz N Alagaili, Javier Almunia, Ajoy Aloysius, Nabil M S Amor, Reza Ardehali, Adriana Arneson, Charles Scott Baker, Gareth T Banks, Katherine Belov, Nigel Charles Bennett, Peter Black, Daniel T Blumstein, Eleanor K Bors, Charles E Breeze, Robert T Brooke, Janine L Brown, Gerald G Carter, Alex Caulton, Julie M Cavin, Lisa Chakrabarti, Ioulia Chatzistamou, Andreas S Chavez, Hao Chen, Kaiyang Cheng, Priscila Chiavellini, Oi-Wa Choi, Shannon M Clarke, Joseph A Cook, Lisa N Cooper, Marie-Laurence Cossette, Joanna Day, Joseph DeYoung, Stacy Dirocco, Christopher Dold, Jonathan L Dunnum, Erin E Ehmke, Candice K Emmons, Stephan Emmrich, Ebru Erbay, Claire Erlacher-Reid, Chris G Faulkes, Zhe Fei, Steven H Ferguson, Carrie J Finno, Jennifer E Flower, Jean-Michel Gaillard, Eva Garde, Livia Gerber, Vadim N Gladyshev, Rodolfo G Goya, Matthew J Grant, Carla B Green, M Bradley Hanson, Daniel William Hart, Martin Haulena, Kelsey Herrick, Andrew N Hogan, Carolyn J Hogg, Timothy Alexander Hore, Taosheng Huang, Juan Carlos Izpisua Belmonte, Anna J Jasinska, Gareth Jones, Eve Jourdain, Olga Kashpur, Harold Katcher, Etsuko Katsumata, Vimala Kaza, Hippokratis Kiaris, Michael S Kobor, Paweł Kordowitzki, William R Koski, Michael Krützen, Soo Bin Kwon, Brenda Larison, Sang-Goo Lee, Marianne Lehmann, Jean-François Lemaitre, Andrew J Levine, Xinmin Li, Cun Li, Andrea R Lim, David Tse Shen Lin, Dana M Lindemann, Schuyler W Liphardt, Thomas J Little, Nicholas Macoretta, Dewey Maddox, Craig O Matkin, Julie A Mattison, Matthew McClure, June Mergl, Jennifer J Meudt, Gisele A Montano, Khyobeni Mozhui, Jason Munshi-South, William J Murphy, Asieh Naderi, Martina Nagy, Pritika Narayan, Peter W Nathanielsz, Ngoc B Nguyen, Christof Niehrs, Batsaikhan Nyamsuren, Justine K O'Brien, Perrie O'Tierney Ginn, Duncan T Odom, Alexander G Ophir, Steve Osborn, Elaine A Ostrander, Kim M Parsons, Kimberly C Paul, Amy B Pedersen, Matteo Pellegrini, Katharina J Peters, Jessica L Petersen, Darren W Pietersen, Gabriela M Pinho, Jocelyn Plassais, Jesse R Poganik, Natalia A Prado, Pradeep Reddy, Benjamin Rey, Beate R Ritz, Jooke Robbins, Magdalena Rodriguez, Jennifer Russell, Elena Rydkina, Lindsay L Sailer, Adam B Salmon, Akshay Sanghavi, Kyle M Schachtschneider, Dennis Schmitt, Todd L Schmitt, Lars Schomacher, Lawrence B Schook, Karen E Sears, Ashley W Seifert, Aaron B A Shafer, Anastasia V Shindyapina, Melanie Simmons, Kavita Singh, Ishani Sinha, Jesse Slone, Russell Grant Snell, Elham Soltanmohammadi, Matthew L Spangler, Maria Spriggs, Lydia Staggs, Nancy Stedman, Karen J Steinman, Donald T Stewart, Victoria J Sugrue, Balazs Szladovits, Joseph S Takahashi, Masaki Takasugi, Emma C Teeling, Michael J Thompson, Bill Van Bonn, Sonja C Vernes, Diego Villar, Harry V Vinters, Ha Vu, Mary C Wallingford, Nan Wang, Gerald S Wilkinson, Robert W Williams, Qi Yan, Mingjia Yao, Brent G Young, Bohan Zhang, Zhihui Zhang, Yang Zhao, Peng Zhao, Wanding Zhou, Joseph Alan Zoller, Jason Ernst, Andrei Seluanov, Vera Gorbunova, Xiangdong William Yang, Kenneth Raj, Steve Horvath
DNA methylation networks underlying mammalian traits. Science (New York, N.Y.) 381 (6658) (2023)
Ake T Lu, Z Fei, Amin Haghani, T R Robeck, Joseph Alan Zoller, Caesar Z Li, R Lowe, Q Yan, Joshua Zhang, H Vu, J Ablaeva, Victoria América Acosta-Rodríguez, Danielle M Adams, Javier Almunia, Ajoy Aloysius, R Ardehali, A Arneson, Charles Scott Baker, G Banks, K Belov, N C Bennett, P Black, Daniel T Blumstein, E K Bors, Charles E Breeze, R T Brooke, J L Brown, G G Carter, A Caulton, J M Cavin, L Chakrabarti, I Chatzistamou, H Chen, K Cheng, P Chiavellini, O W Choi, Shannon M Clarke, Lisa Noelle Cooper, Marie-Laurence Cossette, Joanna Day, J DeYoung, S DiRocco, C Dold, E E Ehmke, Candice K Emmons, Stephan Emmrich, E Erbay, C Erlacher-Reid, Chris G Faulkes, Steven H Ferguson, C J Finno, J E Flower, J M Gaillard, E Garde, L Gerber, Vadim N Gladyshev, Vera Gorbunova, Rodolfo G Goya, M J Grant, C B Green, E N Hales, M B Hanson, Daniel William Hart, M Haulena, K Herrick, A N Hogan, Carolyn J Hogg, Timothy Alexander Hore, Taosheng Huang, J C Izpisua Belmonte, Anna J Jasinska, Gareth Jones, E Jourdain, O Kashpur, H Katcher, E Katsumata, V Kaza, Hippokratis Kiaris, M S Kobor, Paweł Kordowitzki, William R Koski, Michael Krützen, S B Kwon, B Larison, S G Lee, M Lehmann, Jean-François Lemaitre, A J Levine, C Li, X Li, A R Lim, D T S Lin, D M Lindemann, T J Little, N Macoretta, D Maddox, C O Matkin, J A Mattison, M McClure, J Mergl, J J Meudt, G A Montano, Khyobeni Mozhui, J Munshi-South, Asieh Naderi, Martina Nagy, Pritika Narayan, P W Nathanielsz, N B Nguyen, C Niehrs, J K O'Brien, Perrie O'Tierney Ginn, D T Odom, Alexander G Ophir, S Osborn, Elaine A Ostrander, K M Parsons, K C Paul, M Pellegrini, Katharina J Peters, A B Pedersen, Jessica L Petersen, Darren W Pietersen, Gabriela M Pinho, Jocelyn Plassais, Jesse R Poganik, N A Prado, P Reddy, Benjamin Rey, Beate R Ritz, Jooke Robbins, M Rodriguez, Jennifer Russell, E Rydkina, Lindsay L Sailer, Adam B Salmon, Akshay Sanghavi, K M Schachtschneider, Dennis Schmitt, T Schmitt, Lars Schomacher, Lawrence B Schook, Karen E Sears, A W Seifert, Andrei Seluanov, A B A Shafer, Dhanansayan Shanmuganayagam, A V Shindyapina, M Simmons, K Singh, I Sinha, J Slone, Russell Grant Snell, E Soltanmaohammadi, Matthew L Spangler, M C Spriggs, L Staggs, N Stedman, K J Steinman, D T Stewart, V J Sugrue, Balazs Szladovits, Joseph S Takahashi, M Takasugi, Emma C Teeling, Michael J Thompson, B Van Bonn, S C Vernes, Diego Villar, H V Vinters, M C Wallingford, N Wang, R K Wayne, Gerald S Wilkinson, C K Williams, R W Williams, Xiangdong William Yang, M Yao, Brent G Young, B Zhang, Z Zhang, Peng Zhao, Y Zhao, W Zhou, Jörg Zimmermann, Jason Ernst, Kenneth Raj, Steve Horvath
Author Correction: Universal DNA methylation age across mammalian tissues. Nature aging (2023)
Artur Jaroszewicz, Jason Ernst
ChromGene: gene-based modeling of epigenomic data. Genome biology 24 (1) (2023)
Ha Vu, Jason Ernst
Universal chromatin state annotation of the mouse genome. Genome biology 24 (1) (2023)
Tevfik Umut Dincer, Jason Ernst
Integrative epigenomic and functional characterization assay based annotation of regulatory activity across diverse human cell types. bioRxiv : the preprint server for biology (2023)
Ha Vu, Jason Ernst
Universal annotation of the human genome through integration of over a thousand epigenomic datasets. Genome biology 23 (1) (2022)
Adriana Arneson, Amin Haghani, Michael J Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu, Emily Maciejewski, Mingjia Yao, Caesar Z Li, Ake T Lu, Marco Morselli, Liudmilla Rubbi, Bret Barnes, Kasper D Hansen, Wanding Zhou, Charles E Breeze, Jason Ernst, Steve Horvath
A mammalian methylation array for profiling methylation levels at conserved sequences. Nature communications 13 (1) (2022)
Adriana Arneson, Brooke Felsheim, Jennifer Chien, Jason Ernst
Correction to 'ConsHMM Atlas: conservation state annotations for major genomes and human genetic variation'. NAR genomics and bioinformatics 3 (3) (2021)
Gianni Carraro, Justin Langerman, Shan Sabri, Zareeb Lorenzana, Arunima Purkayastha, Guangzhu Zhang, Bindu Konda, Cody J Aros, Ben A Calvert, Aleks Szymaniak, Emily W Nickerson, Michael Mulligan, Priyanka Bhatt, Junjie Lu, Preethi Vijayaraj, Changfu Yao, David W Shia, Andrew J Lund, Edo Israely, Tammy M Rickabaugh, Jason Ernst, Martin Mense, Scott H Randell, Eszter K Vladar, Amy L Ryan, Kathrin Plath, John E Mahoney, Barry R Stripp, Brigitte N Gomperts
Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition. Nature medicine 27 (5) (2021)
Soo Bin Kwon, Jason Ernst
Single-nucleotide conservation state annotation of the SARS-CoV-2 genome. Communications biology 4 (1) (2021)
Soo Bin Kwon, Jason Ernst
Learning a genome-wide score of human-mouse conservation at the functional genomics level. Nature communications 12 (1) (2021)
H C Palmer Rohan, Emma C Johnson, Hyejung Won, Renato Polimanti, Manav Kapoor, Apurva S Chitre, Molly A Bogue, Chelsie E Benca-Bachman, Clarissa C Parker, Anurag Verma, Timothy J Reynolds, Jason Ernst, Michael Bray, Soo Bin Kwon, Dongbing Lai, Bryan C Quach, Nathan C Gaddis, Laura M Saba, Hao Chen, Michael Hawrylycz, Shan Zhang, Yuan Zhou, Spencer Mahaffey, Christian Fischer, Sandra Sanchez-Roige, Anita Bandrowski, Qing Lu, Li Shen, Philipp P Henrich, Joshua C Gray, Laura J Bierut, Dana B Hancock, Howard J Edenberg, Eric O Johnson, Eric J Nestler, Peter B Barr, Pjotr Prins, Desmond J Smith, Schahram Akbarian, Thorgeir E Thorgeirsson, Dave Walton, Erich J Baker, Daniel A Jacobson, Abraham A Palmer, Michael F Miles, Elissa J Chesler, Jake Emerson, Arpana Agrawal, Maryann E Martone, Robert W Williams
Integration of evidence across human and model organism studies: A meeting report. Genes, brain, and behavior (2021)
Olivera Grujic, Tanya N Phung, Soo Bin Kwon, Adriana Arneson, Yuju Lee, Kirk E Lohmueller, Jason Ernst
Identification and characterization of constrained non-exonic bases lacking predictive epigenomic and transcription factor binding annotations. Nature communications 11 (1) (2020)
Seyedeh Maryam Zekavat, Sanni Ruotsalainen, Robert E Handsaker, Maris Alver, Jonathan M Bloom, Timothy Poterba, Cotton Seed, Jason Ernst, Mark Chaffin, Jesse M Engreitz, Gina M Peloso, Ani Manichaikul, Chaojie Yang, Kathleen A Ryan, Mao Fu, W Craig Johnson, Michael Tsai, Matthew Budoff, Ramachandran S Vasan, L Adrienne Cupples, Jerome I Rotter, Stephen S Rich, Wendy Post, Braxton D Mitchell, Adolfo Correa, Andres Metspalu, James G Wilson, Veikko Salomaa, Manolis Kellis, Mark J Daly, Benjamin M Neale, Steven McCarroll, Ida Surakka, Tõnu Esko, Andrea Ganna, Samuli Ripatti, Sekar Kathiresan, Pradeep Natarajan, null null
Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries. Nature communications 11 (1) (2020)
Adriana Arneson, Brooke Felsheim, Jennifer Chien, Jason Ernst
ConsHMM Atlas: conservation state annotations for major genomes and human genetic variation. NAR genomics and bioinformatics 2 (4) (2020)
Adriana Arneson, Jason Ernst
Systematic discovery of conservation states for single-nucleotide annotation of the human genome. Communications biology 2 (2019)
Seyedeh Maryam Zekavat, Sanni Ruotsalainen, Robert E Handsaker, Maris Alver, Jonathan M Bloom, Timothy Poterba, Cotton Seed, Jason Ernst, Mark Chaffin, Jesse M Engreitz, Gina M Peloso, Ani Manichaikul, Chaojie Yang, Kathleen A Ryan, Mao Fu, W Craig Johnson, Michael Tsai, Matthew Budoff, Ramachandran S Vasan, L Adrienne Cupples, Jerome I Rotter, Stephen S Rich, Wendy Post, Braxton D Mitchell, Adolfo Correa, Andres Metspalu, James G Wilson, Veikko Salomaa, Manolis Kellis, Mark J Daly, Benjamin M Neale, Steven McCarroll, Ida Surakka, Tõnu Esko, Andrea Ganna, Samuli Ripatti, Sekar Kathiresan, Pradeep Natarajan, null null
Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries. Nature communications 9 (1) (2018)
Konstantina-Ioanna Sereti, Ngoc B Nguyen, Paniz Kamran, Peng Zhao, Sara Ranjbarvaziri, Shuin Park, Shan Sabri, James L Engel, Kevin Sung, Rajan P Kulkarni, Yichen Ding, Tzung K Hsiai, Kathrin Plath, Jason Ernst, Debashis Sahoo, Hanna K A Mikkola, M Luisa Iruela-Arispe, Reza Ardehali
Analysis of cardiomyocyte clonal expansion during mouse heart development and injury. Nature communications 9 (1) (2018)
Gabriel B Ferguson, Ben Van Handel, Maxwell Bay, Petko Fiziev, Tonis Org, Siyoung Lee, Ruzanna Shkhyan, Nicholas W Banks, Mila Scheinberg, Ling Wu, Biagio Saitta, Joseph Elphingstone, A Noelle Larson, Scott M Riester, April D Pyle, Nicholas M Bernthal, Hanna Ka Mikkola, Jason Ernst, Andre J van Wijnen, Michael Bonaguidi, Denis Evseenko
Mapping molecular landmarks of human skeletal ontogeny and pluripotent stem cell-derived articular chondrocytes. Nature communications 9 (1) (2018)
Seyedeh Maryam Zekavat, Sanni Ruotsalainen, Robert E Handsaker, Maris Alver, Jonathan M Bloom, Timothy Poterba, Cotton Seed, Jason Ernst, Mark Chaffin, Jesse M Engreitz, Gina M Peloso, Ani Manichaikul, Chaojie Yang, Kathleen A Ryan, Mao Fu, W Craig Johnson, Michael Tsai, Matthew Budoff, Ramachandran S Vasan, L Adrienne Cupples, Jerome I Rotter, Stephen S Rich, Wendy Post, Braxton D Mitchell, Adolfo Correa, Andres Metspalu, James G Wilson, Veikko Salomaa, Manolis Kellis, Mark J Daly, Benjamin M Neale, Steven McCarroll, Ida Surakka, Tõnu Esko, Andrea Ganna, Samuli Ripatti, Sekar Kathiresan, Pradeep Natarajan, null null
Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries. Nature communications 9 (1) (2018)
Petko Fiziev, Jason Ernst
ChromTime: modeling spatio-temporal dynamics of chromatin marks. Genome biology 19 (1) (2018)
Pradeep Natarajan, Gina M Peloso, Seyedeh Maryam Zekavat, May Montasser, Andrea Ganna, Mark D Chaffin, Amit V Khera, Wei Zhou, Jonathan M Bloom, Jesse M Engreitz, Jason Ernst, Jeffrey R O'Connell, Sanni E Ruotsalainen, Maris Alver, Ani Manichaikul, W Craig Johnson, James A Perry, Timothy Poterba, Cotton Seed, Ida L Surakka, Tõnu Esko, Samuli Ripatti, Veikko V Salomaa, Adolfo Correa, Ramachandran S Vasan, Manolis Kellis, Benjamin M Neale, Eric S Lander, Goncalo Abecasis, Braxton Mitchell, Stephen S Rich, James G Wilson, L Adrienne Cupples, Jerome I Rotter, Cristen J Willer, Sekar Kathiresan, null null
Deep-coverage whole genome sequences and blood lipids among 16,324 individuals. Nature communications 9 (1) (2018)
Jason Ernst, Manolis Kellis
Chromatin-state discovery and genome annotation with ChromHMM. Nature protocols 12 (12) (2017)