Jean-Philippe Vert

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 15

Top Venues

Nature methods

Nature communications

Nature biotechnology

PLoS computational biology

Mines ParisTech

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Mines ParisTech Jan 01 2006

France

Director :: Centre for Computational Biology

Ecole normale supérieure Sep 01 2016 - Aug 05 2018

France

Professor :: Département de Mathématiques et Applications

Publications

Jean-Philippe Vert
How will generative AI disrupt data science in drug discovery? Nature biotechnology (2023)
Felipe Llinares-López, Quentin Berthet, Mathieu Blondel, Olivier Teboul, Jean-Philippe Vert
Deep embedding and alignment of protein sequences. Nature methods (2022)
Felipe Llinares-López, Quentin Berthet, Mathieu Blondel, Olivier Teboul, Jean-Philippe Vert
Deep embedding and alignment of protein sequences. Nature methods 20 (1) (2022)
Felipe Llinares-López, Quentin Berthet, Mathieu Blondel, Olivier Teboul, Jean-Philippe Vert
Deep embedding and alignment of protein sequences. Nature methods 20 (1) (2022)
Felipe Llinares-López, Quentin Berthet, Mathieu Blondel, Olivier Teboul, Jean-Philippe Vert
Deep embedding and alignment of protein sequences. Nature methods 20 (1) (2022)
Gunjan Baid, Daniel E Cook, Kishwar Shafin, Taedong Yun, Felipe Llinares-López, Quentin Berthet, Anastasiya Belyaeva, Armin Töpfer, Aaron M Wenger, William J Rowell, Howard Yang, Alexey Kolesnikov, Waleed Ammar, Jean-Philippe Vert, Ashish Vaswani, Cory Y McLean, Maria Nattestad, Pi-Chuan Chang, Andrew Carroll
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer. Nature biotechnology (2022)
Judith Abécassis, Fabien Reyal, Jean-Philippe Vert
CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data. Nature communications 12 (1) (2021)
Felix Raimundo, Celine Vallot, Jean-Philippe Vert
Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis. Genome biology 21 (1) (2020)
Lotfi Slim, Clément Chatelain, Chloé-Agathe Azencott, Jean-Philippe Vert
Novel methods for epistasis detection in genome-wide association studies. PloS one 15 (11) (2020)
Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data. Nature communications 10 (1) (2019)
Olivier Collier, Véronique Stoven, Jean-Philippe Vert
LOTUS: A single- and multitask machine learning algorithm for the prediction of cancer driver genes. PLoS computational biology 15 (9) (2019)
Judith Abécassis, Anne-Sophie Hamy, Cécile Laurent, Benjamin Sadacca, Hélène Bonsang-Kitzis, Fabien Reyal, Jean-Philippe Vert
Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data. PloS one 14 (11) (2019)
Evelien M Bunnik, Kate B Cook, Nelle Varoquaux, Gayani Batugedara, Jacques Prudhomme, Anthony Cort, Lirong Shi, Chiara Andolina, Leila S Ross, Declan Brady, David A Fidock, Francois H Nosten, Rita Tewari, Photini Sinnis, Ferhat Ay, Jean-Philippe Vert, William Stafford Noble, Karine G Le Roch
Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages. Nature communications 9 (1) (2018)
Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
A general and flexible method for signal extraction from single-cell RNA-seq data. Nature communications 9 (1) (2018)
Marine Le Morvan, Andrei Zinovyev, Jean-Philippe Vert
NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis. PLoS computational biology 13 (6) (2017)

Jean-Philippe Vert

Publication Activity (10 Years)

Top Topics

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