Davide Risso

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 21

Top Venues

bioRxiv : the preprint server for biology

eLife

PLoS computational biology

Nature communications

University of Padova

Universita degli Studi di Padova (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Padova Oct 01 2018

Italy

Assistant Professor :: Department of Statistical Sciences

Weill Cornell Medicine Oct 01 2018 - Sep 30 2019

United States

Adjunct Assistant Professor :: Healtchare Policy and Research

Weill Cornell Medical College Feb 01 2017 - Sep 15 2018

United States

Assistant Professor :: Healthcare Policy and Research

University of California Berkeley Apr 04 2012 - Dec 31 2016

United States

Post Doc :: Department of Statistics

Education History

Universita degli Studi di Padova Jan 01 2009 - Feb 20 2012

Italy

PHD :: Department of Statistical Sciences

Publications

Kaitlyn Ford, Elena Zuin, Dario Righelli, Elizabeth Medina, Hannah Schoch, Kristan Singletary, Christine M Muheim, Marcos G Frank, Stephanie C Hicks, Davide Risso, Lucia Peixoto
A Global Transcriptional Atlas of the Effect of Sleep Deprivation in the Mouse Frontal Cortex. bioRxiv : the preprint server for biology (2023)
Lieven Clement, Hsin-Jung Chou, Divya Kunda, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit, John Ngai, Whitney E Heavner
A Latent Activated Olfactory Stem Cell State Revealed by Single Cell Transcriptomic and Epigenomic Profiling. bioRxiv : the preprint server for biology (2023)
Stefania Pirrotta, Laura Masatti, Anna Corr, Fabiola Pedrini, Giovanni Esposito, Paolo Martini, Davide Risso, Chiara Romualdi, Enrica Calura
signifinder enables the identification of tumor cell states and cancer expression signatures in bulk, single-cell and spatial transcriptomic data. bioRxiv : the preprint server for biology (2023)
Jeroen Gilis, Laura Perin, Milan Malfait, Lieven Clement, Alemu Takele Assefa, Bie Verbist, Davide Risso, Lieven Clement
Differential detection workflows for multi-sample single-cell RNA-seq data. bioRxiv : the preprint server for biology (2023)
Jeroen Gilis, Laura Perin, Milan Malfait, Lieven Clement, Alemu Takele Assefa, Bie Verbist, Davide Risso, Lieven Clement
Differential detection workflows for multi-sample single-cell RNA-seq data. bioRxiv : the preprint server for biology (2023)
Jeroen Gilis, Laura Perin, Milan Malfait, Lieven Clement, Alemu Takele Assefa, Bie Verbist, Davide Risso, Lieven Clement
Differential detection workflows for multi-sample single-cell RNA-seq data. bioRxiv : the preprint server for biology (2023)
Jeroen Gilis, Laura Perin, Milan Malfait, Lieven Clement, Alemu Takele Assefa, Bie Verbist, Davide Risso, Lieven Clement
Differential detection workflows for multi-sample single-cell RNA-seq data. bioRxiv : the preprint server for biology (2023)
Dario Righelli, Lukas M Weber, Helena Lucia Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T L Lun, Stephanie C Hicks, Davide Risso
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. Bioinformatics (Oxford, England) 38 (11) (2022)
Federico Agostinis, Chiara Romualdi, Gabriele Sales, Davide Risso
NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data. Bioinformatics (Oxford, England) 38 (9) (2022)
Stephanie C Hicks, Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso
mbkmeans: Fast clustering for single cell data using mini-batch k-means. PLoS computational biology 17 (1) (2021)
Matteo Calgaro, Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo
Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data. Genome biology 21 (1) (2020)
David H Brann, Tatsuya Tsukahara, Caleb Weinreb, Marcela Lipovsek, Koen Van den Berge, Boying Gong, Rebecca K Chance, Iain C Macaulay, Hsin-Jung Chou, Russell B Fletcher, Diya Das, Kelly Street, Hector Roux de Bezieux, Yoon-Gi Choi, Davide Risso, Sandrine Dudoit, Elizabeth Purdom, Jonathan S Mill, Ralph Abi Hachem, Hiroaki Matsunami, Darren W Logan, Bradley J Goldstein, Matthew S Grubb, John Ngai, Sandeep Robert Datta
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Science advances 6 (31) (2020)
Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data. Nature communications 10 (1) (2019)
Alexander Naka, Julia Veit, Ben Shababo, Rebecca K Chance, Davide Risso, David Stafford, Benjamin Snyder, Andrew Egladyous, Desiree Chu, Savitha Sridharan, Daniel P Mossing, Liam Paninski, John Ngai, Hillel Adesnik
Complementary networks of cortical somatostatin interneurons enforce layer specific control. eLife 8 (2019)
Ashley M Ingiosi, Hannah Schoch, Taylor Wintler, Kristan G Singletary, Dario Righelli, Leandro G Roser, Elizabeth Medina, Davide Risso, Marcos G Frank, Lucia Peixoto
Shank3 modulates sleep and expression of circadian transcription factors. eLife 8 (2019)
Davide Risso, Liam Purvis, Russell B Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. PLoS computational biology 14 (9) (2018)
John N Koberstein, Shane G Poplawski, Mathieu E Wimmer, Giulia Porcari, Charlly Kao, Bruce Gomes, Davide Risso, Hakon Hakonarson, Nancy R Zhang, Robert T Schultz, Ted Abel, Lucia Peixoto
Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism. Science signaling 11 (513) (2018)
Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
A general and flexible method for signal extraction from single-cell RNA-seq data. Nature communications 9 (1) (2018)
Daniel J Kramer, Davide Risso, Polina Kosillo, John Ngai, Helen S Bateup
Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability. eNeuro 5 (3) (2018)
Yong Jin Choi, Chao-Po Lin, Davide Risso, Sean Chen, Thomas Aquinas Kim, Meng How Tan, Jin Billy Li, Yalei Wu, Caifu Chen, Zhenyu Xuan, Todd S Macfarlan, Weiqun Peng, Kevin C Kent Lloyd, Sang Yong Kim, Terence P Speed, Lin He
Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells. Science (New York, N.Y.) 355 (6325) (2017)
Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference. F1000Research 6 (2017)
Davide Risso, John Ngai, Terence P Speed, Sandrine Dudoit
Normalization of RNA-seq data using factor analysis of control genes or samples. Nature biotechnology 32 (9) (2014)

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Publication Activity (10 Years)

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Davide Risso