Andrei Zinovyev

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Venues

Entropy (Basel, Switzerland)

PLoS computational biology

NPJ systems biology and applications

Nature communications

Institut Curie

Institute of Computational Modeling (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institut Curie Jan 01 2005

France

Scientific coordinator :: Bioinformatics

Institut des Hautes Études Scientifiques Dec 05 2001 - Dec 31 2004

France

Postdoctoral Researcher :: Mathematical Biology

Education History

Institute of Computational Modeling Sep 01 1999 - Nov 11 2001

Russia

PHD :: Non-equilibrium systems

Publications

Matthieu Najm, Matthieu Cornet, Luca Albergante, Andrei Zinovyev, Isabelle Sermet-Gaudelus, Véronique Stoven, Laurence Calzone, Loredana Martignetti
Representation and quantification of module activity from omics data with rROMA. NPJ systems biology and applications 10 (1) (2024)
Maryna Chepeleva, Tony Kaoma, Andrei Zinovyev, Reka Toth, Petr V Nazarov
consICA: an R package for robust reference-free deconvolution of multi-omics data. Bioinformatics advances 4 (1) (2024)
Matthieu Najm, Matthieu Cornet, Luca Albergante, Andrei Zinovyev, Isabelle Sermet-Gaudelus, Véronique Stoven, Laurence Calzone, Loredana Martignetti
Representation and quantification of module activity from omics data with rROMA. NPJ systems biology and applications 10 (1) (2024)
Gustavo Magaña-López, Laurence Calzone, Andrei Zinovyev, Loïc Paulevé
scBoolSeq: Linking scRNA-seq statistics and Boolean dynamics. PLoS computational biology 20 (7) (2024)
Gustavo Magaña-López, Laurence Calzone, Andrei Zinovyev, Loïc Paulevé
scBoolSeq: Linking scRNA-seq statistics and Boolean dynamics. PLoS computational biology 20 (7) (2024)
Maryna Chepeleva, Tony Kaoma, Andrei Zinovyev, Reka Toth, Petr V Nazarov
consICA: an R package for robust reference-free deconvolution of multi-omics data. Bioinformatics advances 4 (1) (2024)
Aziz Fouché, Loïc Chadoutaud, Olivier Delattre, Andrei Zinovyev
Transmorph : a unifying computational framework for modular single-cell RNA-seq data integration. NAR genomics and bioinformatics 5 (3) (2023)
Evgeny M Mirkes, Jonathan Bac, Aziz Fouché, Sergey V Stasenko, Andrei Zinovyev, Alexander N Gorban
Domain Adaptation Principal Component Analysis: Base Linear Method for Learning with Out-of-Distribution Data. Entropy (Basel, Switzerland) 25 (1) (2022)
Nicolas Captier, Jane Merlevede, Askhat Molkenov, Ainur Seisenova, Altynbek Zhubanchaliyev, Petr V Nazarov, Emmanuel Barillot, Ulykbek Kairov, Andrei Zinovyev
BIODICA: a computational environment for Independent Component Analysis of omics data. Bioinformatics (Oxford, England) 38 (10) (2022)
Evgeny M Mirkes, Jonathan Bac, Aziz Fouché, Sergey V Stasenko, Andrei Zinovyev, Alexander N Gorban
Domain Adaptation Principal Component Analysis: Base Linear Method for Learning with Out-of-Distribution Data. Entropy (Basel, Switzerland) 25 (1) (2022)
Nicolas Captier, Jane Merlevede, Askhat Molkenov, Ainur Seisenova, Altynbek Zhubanchaliyev, Petr V Nazarov, Emmanuel Barillot, Ulykbek Kairov, Andrei Zinovyev
BIODICA: a computational environment for Independent Component Analysis of omics data. Bioinformatics (Oxford, England) (2022)
Evgeny M Mirkes, Jonathan Bac, Aziz Fouché, Sergey V Stasenko, Andrei Zinovyev, Alexander N Gorban
Domain Adaptation Principal Component Analysis: Base Linear Method for Learning with Out-of-Distribution Data. Entropy (Basel, Switzerland) 25 (1) (2022)
Elise Amblard, Jonathan Bac, Alexander Chervov, Vassili Soumelis, Andrei Zinovyev
Hubness reduction improves clustering and trajectory inference in single-cell transcriptomic data. Bioinformatics (Oxford, England) (2021)
Jonathan Bac, Evgeny M Mirkes, Alexander N Gorban, Ivan Y Tyukin, Andrei Zinovyev
Scikit-Dimension: A Python Package for Intrinsic Dimension Estimation. Entropy (Basel, Switzerland) 23 (10) (2021)
Yann Kieffer, Hocine R Hocine, Geraldine Gentric, Floriane Pelon, Charles Bernard, Brigitte Bourachot, Sonia Lameiras, Luca Albergante, Claire Bonneau, Alice Guyard, Karin Tarte, Andrei Zinovyev, Sylvain Baulande, Gerard Zalcman, Anne Vincent-Salomon, Fatima Mechta-Grigoriou
Single-Cell Analysis Reveals Fibroblast Clusters Linked to Immunotherapy Resistance in Cancer. Cancer discovery 10 (9) (2020)
Luca Albergante, Evgeny M Mirkes, Jonathan Bac, Huidong Chen, Alexis Martin, Louis Faure, Emmanuel Barillot, Luca Pinello, Alexander N Gorban, Andrei Zinovyev
Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph. Entropy (Basel, Switzerland) 22 (3) (2020)
Antonio Colaprico, Catharina Olsen, Matthew H Bailey, Gabriel J Odom, Thilde Terkelsen, Tiago C Silva, André Vidas Olsen, Laura Cantini, Andrei Zinovyev, Emmanuel Barillot, Houtan Noushmehr, Gloria Bertoli, Isabella Castiglioni, Claudia Cava, Gianluca Bontempi, Xi Steven Chen, Elena Papaleo
Interpreting pathways to discover cancer driver genes with Moonlight. Nature communications 11 (1) (2020)
Jean-Marie Ravel, L Cristobal Monraz Gomez, Nicolas Sompairac, Laurence Calzone, Elena M Tchevkina, Guido Kroemer, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein
Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases. Cancers 12 (4) (2020)
Alexander Chervov, Jonathan Bac, Andrei Zinovyev
Minimum Spanning vs. Principal Trees for Structured Approximations of Multi-Dimensional Datasets. Entropy (Basel, Switzerland) 22 (11) (2020)
Maria Kondratova, Emmanuel Barillot, Andrei Zinovyev, Laurence Calzone
Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response. Cancers 12 (12) (2020)
Andrei Zinovyev, Urszula Czerwinska, Laura Cantini, Emmanuel Barillot, Klaus M Frahm, Dima L Shepelyansky
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network. PLoS computational biology 16 (2) (2020)
Alessandro Greco, Jon Sanchez Valle, Vera Pancaldi, Anaïs Baudot, Emmanuel Barillot, Michele Caselle, Alfonso Valencia, Andrei Zinovyev, Laura Cantini
Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization. International journal of molecular sciences 20 (13) (2019)
Maria Kondratova, Urszula Czerwinska, Nicolas Sompairac, Sebastian D Amigorena, Vassili Soumelis, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein
A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures. Nature communications 10 (1) (2019)
Huidong Chen, Luca Albergante, Jonathan Y Hsu, Caleb A Lareau, Giosue' Lo Bosco, Jihong Guan, Shuigeng Zhou, Alexander N Gorban, Daniel E Bauer, Martin J Aryee, David M Langenau, Andrei Zinovyev, Jason D Buenrostro, Guo-Cheng Yuan, Luca Pinello
Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM. Nature communications 10 (1) (2019)
José Lages, Dima L Shepelyansky, Andrei Zinovyev
Inferring hidden causal relations between pathway members using reduced Google matrix of directed biological networks. PloS one 13 (1) (2018)
Alexander Mazein, Marek Ostaszewski, Inna Kuperstein, Steven Watterson, Nicolas Le Novère, Diane Lefaudeux, Bertrand De Meulder, Johann Pellet, Irina Balaur, Mansoor Saqi, Maria Manuela Nogueira, Feng Q He, Andrew Parton, Nathanaël Lemonnier, Piotr Gawron, Stephan Gebel, Pierre Hainaut, Markus Ollert, Ugur Dogrusoz, Emmanuel Barillot, Andrei Zinovyev, Reinhard Schneider, Rudi Balling, Charles Auffray
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms. NPJ systems biology and applications 4 (2018)
Ulykbek Kairov, Laura Cantini, Alessandro Greco, Askhat Molkenov, Urszula Czerwinska, Emmanuel Barillot, Andrei Zinovyev
Determining the optimal number of independent components for reproducible transcriptomic data analysis. BMC genomics 18 (1) (2017)
Marine Le Morvan, Andrei Zinovyev, Jean-Philippe Vert
NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis. PLoS computational biology 13 (6) (2017)

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Publication Activity (10 Years)

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Andrei Zinovyev