Jeff Nivala

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 20

Top Venues

Nature

Nature communications

Nature biotechnology

Science (New York, N.Y.)

University of Washington

University of California Santa Cruz (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Washington Sep 01 2017

United States

Principal Scientist :: Computer Science and Engineering

Education History

University of California Santa Cruz Sep 01 2010 - Dec 01 2014

United States

PHD :: Biochemistry

University of Washington Sep 01 2006 - Jun 01 2010

United States

BSC :: Bioengineering

Publications

Keisuke Motone, Daphne Kontogiorgos-Heintz, Jasmine Wee, Kyoko Kurihara, Sangbeom Yang, Gwendolin Roote, Oren E Fox, Yishu Fang, Melissa Queen, Mattias Tolhurst, Nicolas Cardozo, Miten Jain, Jeff Nivala
Multi-pass, single-molecule nanopore reading of long protein strands. Nature (2024)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature (2023)
Ashley Stephenson, Jeff Nivala
Barcoding biomarkers with nanopore sequencing. Nature nanotechnology (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Keisuke Motone, Jeff Nivala
Not if but when nanopore protein sequencing meets single-cell proteomics. Nature methods 20 (3) (2023)
Keisuke Motone, Daphne Kontogiorgos-Heintz, Jasmine Wee, Kyoko Kurihara, Sangbeom Yang, Gwendolin Roote, Yishu Fang, Nicolas Cardozo, Jeff Nivala
Multi-pass, single-molecule nanopore reading of long protein strands with single-amino acid sensitivity. bioRxiv : the preprint server for biology (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Florian Praetorius, Philip J Y Leung, Maxx H Tessmer, Adam Broerman, Cullen Demakis, Acacia F Dishman, Arvind S Pillai, Abbas Idris, David C Juergens, Justas Dauparas, Xinting Li, Paul M Levine, Mila Lamb, Ryanne K Ballard, Stacey R Gerben, Hannah Nguyen, Alex Kang, Banumathi Sankaran, Asim K Bera, Brian F Volkman, Jeff Nivala, Stefan Stoll, Julien S Baker
Design of stimulus-responsive two-state hinge proteins. Science (New York, N.Y.) 381 (6659) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Karen Zhang, Yuan-Jyue Chen, Delaney S Wilde, Kathryn Doroschak, Karin Strauss, Luis Ceze, Georg Seelig, Jeff Nivala
A nanopore interface for higher bandwidth DNA computing. Nature communications 13 (1) (2022)
Linda C Meiser, Bichlien H Nguyen, Yuan-Jyue Chen, Jeff Nivala, Karin Strauss, Luis Ceze, Robert N Grass
Synthetic DNA applications in information technology. Nature communications 13 (1) (2022)
Nicolas Cardozo, Karen Zhang, Kathryn Doroschak, Aerilynn Nguyen, Zoheb Siddiqui, Nicholas Bogard, Karin Strauss, Luis Ceze, Jeff Nivala
Multiplexed direct detection of barcoded protein reporters on a nanopore array. Nature biotechnology (2021)
Kathryn Doroschak, Karen Zhang, Melissa Queen, Aishwarya Mandyam, Karin Strauss, Luis Ceze, Jeff Nivala
Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures. Nature communications 11 (1) (2020)
Luis Ceze, Jeff Nivala, Karin Strauss
Molecular digital data storage using DNA. Nature reviews. Genetics 20 (8) (2019)
Jeff Nivala, Seth L Shipman, George M Church
Spontaneous CRISPR loci generation in vivo by non-canonical spacer integration. Nature microbiology 3 (3) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jeff Nivala