S Stephen Yi (Song Yi)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 37

Top Venues

Nature communications

Nature computational science

Science immunology

NAR cancer

University of Texas at Austin

University of Iowa (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Texas at Austin

United States

Assistant Professor :: Oden Institute for Computational Engineering & Sciences

University of Texas at Austin

United States

Assistant Professor :: Institute for Cellular and Molecular Biology

University of Texas at Austin

United States

Assistant Professor :: Biomedical Engineering

University of Texas at Austin

United States

Director of Bioinformatics :: Oncology

Education History

University of Iowa

United States

PHD

Publications

Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Qing Kong, Shiyu Xia, Xingxin Pan, Kaixiong Ye, Zhouyihan Li, Haoyan Li, Xiaoqiang Tang, Nidhi Sahni, S Stephen Yi, Xing Liu, Hao Wu, Michael B Elowitz, Judy Lieberman, Zhibin Zhang
Alternative splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis. Science immunology 8 (82) (2023)
David R Amici, Harun Cingoz, Milad J Alasady, Sammy Alhayek, Claire M Phoumyvong, Nidhi Sahni, S Stephen Yi, Marc L Mendillo
The HAPSTR2 retrogene buffers stress signaling and resilience in mammals. Nature communications 14 (1) (2023)
Xingxin Pan, Zeynep H Coban Akdemir, Ruixuan Gao, Xiaoqian Jiang, Gloria M Sheynkman, Erxi Wu, Jason H Huang, Nidhi Sahni, S Stephen Yi
AD-Syn-Net: systematic identification of Alzheimer's disease-associated mutation and co-mutation vulnerabilities via deep learning. Briefings in bioinformatics 24 (2) (2023)
Fushun Wang, Wei Wang, Simeng Gu, Dan Qi, Nathan A Smith, Weiguo Peng, Wei Dong, Jiajin Yuan, Binbin Zhao, Ying Mao, Peng Cao, Qing Richard Lu, Lee A Shapiro, S Stephen Yi, Erxi Wu, Jason H Huang
Distinct astrocytic modulatory roles in sensory transmission during sleep, wakefulness, and arousal states in freely moving mice. Nature communications 14 (1) (2023)
David R Amici, Harun Cingoz, Milad J Alasady, Sammy Alhayek, Claire M Phoumyvong, Nidhi Sahni, S Stephen Yi, Marc L Mendillo
The HAPSTR2 retrogene buffers stress signaling and resilience in mammals. Nature communications 14 (1) (2023)
Jessica Lacoste, Marzieh Haghighi, Shahan Haider, Zhen-Yuan Lin, Dmitri Segal, Chloe Reno, Wesley Wei Qian, Xueting Xiong, Hamdah Shafqat Abbasi, Pearl V Ryder, Rebecca A Senft, Beth A Cimini, Frederick P Roth, Michael S Calderwood, David Hill, Marc Vidal, S Stephen Yi, Nidhi Sahni, Jian Peng, Anne-Claude Gingras, Shantanu Singh, Anne E Carpenter, Mikko Taipale
Pervasive mislocalization of pathogenic coding variants underlying human disorders. bioRxiv : the preprint server for biology (2023)
David R Amici, Harun Cingoz, Milad J Alasady, Sammy Alhayek, Claire M Phoumyvong, Nidhi Sahni, S Stephen Yi, Marc L Mendillo
The HAPSTR2 retrogene buffers stress signaling and resilience in mammals. Nature communications 14 (1) (2023)
David R Amici, Harun Cingoz, Milad J Alasady, Sammy Alhayek, Claire M Phoumyvong, Nidhi Sahni, S Stephen Yi, Marc L Mendillo
The HAPSTR2 retrogene buffers stress signaling and resilience in mammals. Nature communications 14 (1) (2023)
Qing Kong, Shiyu Xia, Xingxin Pan, Kaixiong Ye, Zhouyihan Li, Haoyan Li, Xiaoqiang Tang, Nidhi Sahni, S Stephen Yi, Xing Liu, Hao Wu, Michael B Elowitz, Judy Lieberman, Zhibin Zhang
Alternative splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis. Science immunology 8 (82) (2023)
Swarnendu Tripathi, Hazheen K Shirnekhi, Scott D Gorman, Bappaditya Chandra, David W Baggett, Cheon-Gil Park, Ramiz Somjee, Benjamin Lang, Seyed Mohammad Hadi Hosseini, Brittany J Pioso, Yongsheng Li, Ilaria Iacobucci, Qingsong Gao, Michael N Edmonson, Stephen V Rice, Xin Zhou, John Bollinger, Diana M Mitrea, Michael R White, Daniel J McGrail, Daniel F Jarosz, S Stephen Yi, M Madan Babu, Charles G Mullighan, Jinghui Zhang, Nidhi Sahni, Richard W Kriwacki
Defining the condensate landscape of fusion oncoproteins. Nature communications 14 (1) (2023)
Qing Kong, Shiyu Xia, Xingxin Pan, Kaixiong Ye, Zhouyihan Li, Haoyan Li, Xiaoqiang Tang, Nidhi Sahni, S Stephen Yi, Xing Liu, Hao Wu, Michael B Elowitz, Judy Lieberman, Zhibin Zhang
Alternative splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis. Science immunology 8 (82) (2023)
Xingxin Pan, Zeynep H Coban Akdemir, Ruixuan Gao, Xiaoqian Jiang, Gloria M Sheynkman, Erxi Wu, Jason H Huang, Nidhi Sahni, S Stephen Yi
AD-Syn-Net: systematic identification of Alzheimer's disease-associated mutation and co-mutation vulnerabilities via deep learning. Briefings in bioinformatics (2023)
Xingxin Pan, Zeynep H Coban Akdemir, Ruixuan Gao, Xiaoqian Jiang, Gloria M Sheynkman, Erxi Wu, Jason H Huang, Nidhi Sahni, S Stephen Yi
AD-Syn-Net: systematic identification of Alzheimer's disease-associated mutation and co-mutation vulnerabilities via deep learning. Briefings in bioinformatics 24 (2) (2023)
David R Amici, Harun Cingoz, Milad J Alasady, Sammy Alhayek, Claire M Phoumyvong, Nidhi Sahni, S Stephen Yi, Marc L Mendillo
The HAPSTR2 retrogene buffers stress signaling and resilience in mammals. Nature communications 14 (1) (2023)
Qing Kong, Shiyu Xia, Xingxin Pan, Kaixiong Ye, Zhouyihan Li, Haoyan Li, Xiaoqiang Tang, Nidhi Sahni, S Stephen Yi, Xing Liu, Hao Wu, Michael B Elowitz, Judy Lieberman, Zhibin Zhang
Alternative splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis. Science immunology 8 (82) (2023)
Yuan Ma, Weijie Guo, Quanbing Mou, Xiangli Shao, Mingkuan Lyu, Valeria Garcia, Linggen Kong, Whitney Lewis, Carson Ward, Zhenglin Yang, Xingxin Pan, S Stephen Yi, Yi Lu
Spatial imaging of glycoRNA in single cells with ARPLA. Nature biotechnology (2023)
Jiakai Hou, Shaoheng Liang, Chunyu Xu, Yanjun Wei, Yunfei Wang, Yukun Tan, Nidhi Sahni, Daniel J McGrail, Chantale Bernatchez, Michael Davies, Yumei Li, Rui Chen, S Stephen Yi, Yiwen Chen, Cassian Yee, Ken Chen, Weiyi Peng
Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors. NAR cancer 4 (4) (2022)
Anupam K Chakravarty, Daniel J McGrail, Thomas M Lozanoski, Brandon S Dunn, David J H Shih, Kara M Cirillo, Sueda H Cetinkaya, Wenjin Jim Zheng, Gordon B Mills, S Stephen Yi, Daniel F Jarosz, Nidhi Sahni
Biomolecular Condensation: A New Phase in Cancer Research. Cancer discovery 12 (9) (2022)
Jiakai Hou, Shaoheng Liang, Chunyu Xu, Yanjun Wei, Yunfei Wang, Yukun Tan, Nidhi Sahni, Daniel J McGrail, Chantale Bernatchez, Michael Davies, Yumei Li, Rui Chen, S Stephen Yi, Yiwen Chen, Cassian Yee, Ken Chen, Weiyi Peng
Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors. NAR cancer 4 (4) (2022)
Jiakai Hou, Shaoheng Liang, Chunyu Xu, Yanjun Wei, Yunfei Wang, Yukun Tan, Nidhi Sahni, Daniel J McGrail, Chantale Bernatchez, Michael Davies, Yumei Li, Rui Chen, S Stephen Yi, Yiwen Chen, Cassian Yee, Ken Chen, Weiyi Peng
Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors. NAR cancer 4 (4) (2022)
Xu Hua, Yongsheng Li, Sairahul R Pentaparthi, Daniel J McGrail, Raymond Zou, Li Guo, Aditya Shrawat, Kara M Cirillo, Qing Li, Akshay V Bhat, Min Xu, Dan Qi, Ashok Singh, Francis McGrath, Steven B Andrews, Kyaw Lwin Aung, Jishnu Das, Yunyun Zhou, Alessia Lodi, Gordon B Mills, S Gail Eckhardt, Marc L Mendillo, Stefano Tiziani, Erxi Wu, Jason H Huang, Nidhi Sahni, S Stephen Yi
Landscape of microRNA regulatory network architecture and functional rerouting in cancer. Cancer research (2022)
Yongsheng Li, Brandon Burgman, Daniel J McGrail, Ming Sun, Dan Qi, Sachet A Shukla, Erxi Wu, Anna Capasso, Shiaw-Yih Lin, Catherine J Wu, S Gail Eckhardt, Gordon B Mills, Bo Li, Nidhi Sahni, S Stephen Yi
Integrated Genomic Characterization of the Human Immunome in Cancer. Cancer research 80 (21) (2020)
S Stephen Yi, Sidi Chen, Luoying Zhang, Nidhi Sahni
Signal Transduction and Regulation: Insights into Evolution. BioMed research international 2016 (2016)

S Stephen Yi.css-eqlu8i{font-size:small;padding-left:4px;} (Song Yi)

Publication Activity (10 Years)

Top Topics

Top Venues

S Stephen Yi (Song Yi)