Johannes Friedrich

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 9

Top Topics

Drosophila Melanogaster

Top Venues

PLoS computational biology

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Changjia Cai, Cynthia Dong, Johannes Friedrich, Marton Rozsa, Eftychios A Pnevmatikakis, Andrea Giovannucci
FIOLA: an accelerated pipeline for fluorescence imaging online analysis. Nature methods 20 (9) (2023)
Johannes Friedrich, Andrea Giovannucci, Eftychios A Pnevmatikakis
Online analysis of microendoscopic 1-photon calcium imaging data streams. PLoS computational biology 17 (1) (2021)
Changjia Cai, Johannes Friedrich, Amrita Singh, M Hossein Eybposh, Eftychios A Pnevmatikakis, Kaspar Podgorski, Andrea Giovannucci
VolPy: Automated and scalable analysis pipelines for voltage imaging datasets. PLoS computational biology 17 (4) (2021)
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou, Baljit S Khakh, David W Tank, Dmitri B Chklovskii, Eftychios A Pnevmatikakis
CaImAn an open source tool for scalable calcium imaging data analysis. eLife 8 (2019)
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu, Jihong Zheng, Jonathan B Grimm, Ronak Patel, Johannes Friedrich, Brett D Mensh, Liam Paninski, John J Macklin, Gabe J Murphy, Kaspar Podgorski, Bei-Jung Lin, Tsai-Wen Chen, Glenn C Turner, Zhe J Liu, Minoru Koyama, Karel Svoboda, Misha B Ahrens, Luke D Lavis, Eric R Schreiter
Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science (New York, N.Y.) 365 (6454) (2019)
Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen, Mazen A Kheirbek, Bernardo L Sabatini, Robert E Kass, Liam Paninski
Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data. eLife 7 (2018)
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H Macke, Srinivas C Turaga, Patrick J Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D Harris, Ben Bolte, Timothy A Machado, Dario Ringach, Jasmine Stone, Luke E Rogerson, Nicolas J Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas Savas Tolias, Matthias Bethge
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLoS computational biology 14 (5) (2018)
Johannes Friedrich, Weijian Yang, Daniel Soudry, Yu Mu, Misha B Ahrens, Rafael Yuste, Darcy S Peterka, Liam Paninski
Multi-scale approaches for high-speed imaging and analysis of large neural populations. PLoS computational biology 13 (8) (2017)
Johannes Friedrich, Pengcheng Zhou, Liam Paninski
Fast online deconvolution of calcium imaging data. PLoS computational biology 13 (3) (2017)