Zhe J Liu (Zhe Liu)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 33

Top Venues

Nature methods

Nature genetics

eLife

Nature communications

Howard Hughes Medical Institute

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Howard Hughes Medical Institute

United States

Group Leader :: Janelia Research Campus

Howard Hughes Medical Institute

United States

Fellow :: Janelia Research Campus

Education History

University of California Berkeley

United States

PHD :: MCB

Tsinghua University

China

MSC :: School of Medicine

Tsinghua University

China

BSC :: School of Life Sciences

Publications

Katie L Holland, Sarah E Plutkis, Timothy A Daugird, Abhishek Sau, Jonathan B Grimm, Brian P English, Qinsi Zheng, Sandeep Dave, Fariha Rahman, Liangqi Xie, Peng Dong, Ariana N Tkachuk, Timothy A Brown, Robert H Singer, Zhe J Liu, Catherine G Galbraith, Siegfried M Musser, Wesley R Legant, Luke D Lavis
A series of spontaneously blinking dyes for super-resolution microscopy. bioRxiv : the preprint server for biology (2024)
Peng Dong, Shu Zhang, Valentina Gandin, Liangqi Xie, Lihua Wang, Andrew L Lemire, Wenhong Li, Hideo Otsuna, Takashi Kawase, Arthur D Lander, Howard Y Chang, Zhe J Liu
Cohesin prevents cross-domain gene coactivation. Nature genetics 56 (8) (2024)
Liang-Zhong Yang, Yi-Hui Min, Yu-Xin Liu, Bao-Qing Gao, Xiao-Qi Liu, Youkui Huang, Haifeng Wang, Li Yang, Zhe J Liu, Ling-Ling Chen
CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells. Nature methods (2024)
Liang-Zhong Yang, Yi-Hui Min, Yu-Xin Liu, Bao-Qing Gao, Xiao-Qi Liu, Youkui Huang, Haifeng Wang, Li Yang, Zhe J Liu, Ling-Ling Chen
Author Correction: CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells. Nature methods (2024)
Timothy A Daugird, Yu Shi, Katie L Holland, Hosein Rostamian, Zhe J Liu, Luke D Lavis, Joseph Rodriguez, Brian D Strahl, Wesley R Legant
Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment. Nature communications 15 (1) (2024)
Liang-Zhong Yang, Yi-Hui Min, Yu-Xin Liu, Bao-Qing Gao, Xiao-Qi Liu, Youkui Huang, Haifeng Wang, Li Yang, Zhe J Liu, Ling-Ling Chen
CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells. Nature methods (2024)
Peng Dong, Shu Zhang, Valentina Gandin, Liangqi Xie, Lihua Wang, Andrew L Lemire, Wenhong Li, Hideo Otsuna, Takashi Kawase, Arthur D Lander, Howard Y Chang, Zhe J Liu
Cohesin prevents cross-domain gene coactivation. Nature genetics 56 (8) (2024)
Liang-Zhong Yang, Yi-Hui Min, Yu-Xin Liu, Bao-Qing Gao, Xiao-Qi Liu, Youkui Huang, Haifeng Wang, Li Yang, Zhe J Liu, Ling-Ling Chen
Author Correction: CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells. Nature methods (2024)
Katie L Holland, Sarah E Plutkis, Timothy A Daugird, Abhishek Sau, Jonathan B Grimm, Brian P English, Qinsi Zheng, Sandeep Dave, Fariha Rahman, Liangqi Xie, Peng Dong, Ariana N Tkachuk, Timothy A Brown, Robert H Singer, Zhe J Liu, Catherine G Galbraith, Siegfried M Musser, Wesley R Legant, Luke D Lavis
A series of spontaneously blinking dyes for super-resolution microscopy. bioRxiv : the preprint server for biology (2024)
Peng Dong, Shu Zhang, Valentina Gandin, Liangqi Xie, Lihua Wang, Andrew L Lemire, Wenhong Li, Hideo Otsuna, Takashi Kawase, Arthur D Lander, Howard Y Chang, Zhe J Liu
Cohesin prevents cross-domain gene coactivation. Nature genetics 56 (8) (2024)
Katie L Holland, Sarah E Plutkis, Timothy A Daugird, Abhishek Sau, Jonathan B Grimm, Brian P English, Qinsi Zheng, Sandeep Dave, Fariha Rahman, Liangqi Xie, Peng Dong, Ariana N Tkachuk, Timothy A Brown, Robert H Singer, Zhe J Liu, Catherine G Galbraith, Siegfried M Musser, Wesley R Legant, Luke D Lavis
A series of spontaneously blinking dyes for super-resolution microscopy. bioRxiv : the preprint server for biology (2024)
Timothy A Daugird, Yu Shi, Katie L Holland, Hosein Rostamian, Zhe J Liu, Luke D Lavis, Joseph Rodriguez, Brian D Strahl, Wesley R Legant
Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment. Nature communications 15 (1) (2024)
Liang-Zhong Yang, Yi-Hui Min, Yu-Xin Liu, Bao-Qing Gao, Xiao-Qi Liu, Youkui Huang, Haifeng Wang, Li Yang, Zhe J Liu, Ling-Ling Chen
CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells. Nature methods (2024)
Liang-Zhong Yang, Yi-Hui Min, Yu-Xin Liu, Bao-Qing Gao, Xiao-Qi Liu, Youkui Huang, Haifeng Wang, Li Yang, Zhe J Liu, Ling-Ling Chen
CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells. Nature methods (2024)
Liang-Zhong Yang, Yi-Hui Min, Yu-Xin Liu, Bao-Qing Gao, Xiao-Qi Liu, Youkui Huang, Haifeng Wang, Li Yang, Zhe J Liu, Ling-Ling Chen
CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells. Nature methods (2024)
Victor C Wong, Patrick R Houlihan, Hui Liu, Deepika Walpita, Michael C DeSantis, Zhe J Liu, Erin K O'Shea
Plasticity-induced actin polymerization in the dendritic shaft regulates intracellular AMPA receptor trafficking. eLife 13 (2024)
Timothy A Daugird, Yu Shi, Katie L Holland, Hosein Rostamian, Zhe J Liu, Luke D Lavis, Joseph Rodriguez, Brian D Strahl, Wesley R Legant
Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment. Nature communications 15 (1) (2024)
Timothy A Daugird, Yu Shi, Katie L Holland, Hosein Rostamian, Zhe J Liu, Luke D Lavis, Joseph Rodriguez, Brian D Strahl, Wesley R Legant
Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment. Nature communications 15 (1) (2024)
Peng Dong, Shu Zhang, Valentina Gandin, Liangqi Xie, Lihua Wang, Andrew L Lemire, Wenhong Li, Hideo Otsuna, Takashi Kawase, Arthur D Lander, Howard Y Chang, Zhe J Liu
Cohesin prevents cross-domain gene coactivation. Nature genetics (2024)
Victor C Wong, Patrick R Houlihan, Hui Liu, Deepika Walpita, Michael C DeSantis, Zhe J Liu, Erin K O'Shea
Plasticity-induced actin polymerization in the dendritic shaft regulates intracellular AMPA receptor trafficking. eLife 13 (2024)
Liangqi Xie, Zhe J Liu
Single-cell imaging of genome organization and dynamics. Molecular systems biology 17 (7) (2022)
Liangqi Xie, Peng Dong, Yifeng Qi, Tsung-Han S Hsieh, Brian P English, SeolKyoung Jung, Xingqi Chen, Margherita De Marzio, Rafael Casellas, Howard Y Chang, Bin Zhang, Robert Tse Nan Tjian, Zhe J Liu
BRD2 compartmentalizes the accessible genome. Nature genetics 54 (4) (2022)
Joshua T Lange, John C Rose, Celine Y Chen, Yuriy Pichugin, Liangqi Xie, Jun Tang, King L Hung, Kathryn E Yost, Quanming Shi, Marcella L Erb, Utkrisht Rajkumar, Sihan Wu, Sabine Taschner-Mandl, Marie Bernkopf, Charles Swanton, Zhe J Liu, Weini Huang, Howard Y Chang, Vineet Bafna, Anton G Henssen, Benjamin Werner, Paul S Mischel
The evolutionary dynamics of extrachromosomal DNA in human cancers. Nature genetics 54 (10) (2022)
Hui Liu, Hong-Gang Wang, Geoffrey S Pitt, Zhe J Liu
Direct Observation of Compartment-Specific Localization and Dynamics of Voltage-Gated Sodium Channels. The Journal of neuroscience : the official journal of the Society for Neuroscience (2022)
King L Hung, Kathryn E Yost, Liangqi Xie, Quanming Shi, Konstantin Helmsauer, Jens Luebeck, Robert Schöpflin, Joshua T Lange, Rocio Chamorro González, Natasha E Weiser, Celine Y Chen, Maria E Stefanova, Ivy Tsz-Lo Wong, Sihan Wu, Siavash R Dehkordi, Connor V Duffy, Katerina Kraft, Jun Tang, Julia A Belk, John C Rose, M Ryan Corces, Jeffrey M Granja, Rui Li, Utkrisht Rajkumar, Jordan Friedlein, Anindya Bagchi, Ansuman T Satpathy, Robert Tjian, Stefan Mundlos, Vineet Bafna, Anton G Henssen, Paul S Mischel, Zhe J Liu, Howard Y Chang
ecDNA hubs drive cooperative intermolecular oncogene expression. Nature (2021)
Liangqi Xie, Peng Dong, Xingqi Chen, Tsung-Han S Hsieh, Sambashiva Banala, Margherita De Marzio, Brian P English, Yifeng Qi, Seol Kyoung Jung, Kyong-Rim Kieffer-Kwon, Wesley R Legant, Anders S Hansen, Anton Schulmann, Rafael Casellas, Bin Zhang, Eric Betzig, Luke D Lavis, Howard Y Chang, Robert Tse Nan Tjian, Zhe J Liu
3D ATAC-PALM: super-resolution imaging of the accessible genome. Nature methods 17 (4) (2020)
Jonathan B Grimm, Ariana N Tkachuk, Liangqi Xie, Heejun Choi, Boaz Mohar, Natalie Falco, Kathy Schaefer, Ronak Patel, Qinsi Zheng, Zhe J Liu, Jennifer Lippincott-Schwartz, Timothy A Brown, Luke D Lavis
A general method to optimize and functionalize red-shifted rhodamine dyes. Nature methods 17 (8) (2020)
Hiroshi Ochiai, Tetsutaro Hayashi, Mana Umeda, Mika Yoshimura, Akihito Harada, Yukiko Shimizu, Kenta Nakano, Noriko Saitoh, Zhe J Liu, Takashi Yamamoto, Tadashi Okamura, Yasuyuki Ohkawa, Hitoshi Kurumizaka, Itoshi Nikaido
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. Science advances 6 (25) (2020)
Francesco M Piccolo, Zhe J Liu, Peng Dong, Ching-Lung Hsu, Elitsa I Stoyanova, Anjana Rao, Robert Tse Nan Tjian, Nathaniel Heintz
MeCP2 nuclear dynamics in live neurons results from low and high affinity chromatin interactions. eLife 8 (2019)
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu, Jihong Zheng, Jonathan B Grimm, Ronak Patel, Johannes Friedrich, Brett D Mensh, Liam Paninski, John J Macklin, Gabe J Murphy, Kaspar Podgorski, Bei-Jung Lin, Tsai-Wen Chen, Glenn C Turner, Zhe J Liu, Minoru Koyama, Karel Svoboda, Misha B Ahrens, Luke D Lavis, Eric R Schreiter
Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science (New York, N.Y.) 365 (6454) (2019)
Zhe J Liu, Robert Tse Nan Tjian
Visualizing transcription factor dynamics in living cells. The Journal of cell biology 217 (4) (2018)
Peng Dong, Zhe J Liu
Shaping development by stochasticity and dynamics in gene regulation. Open biology 7 (5) (2018)
Li Li, Hui Liu, Peng Dong, Dong Li, Wesley R Legant, Jonathan B Grimm, Luke D Lavis, Eric Betzig, Robert Tjian, Zhe J Liu
Real-time imaging of Huntingtin aggregates diverting target search and gene transcription. eLife 5 (2016)

Zhe J Liu.css-eqlu8i{font-size:small;padding-left:4px;} (Zhe Liu)

Publication Activity (10 Years)

Top Topics

Top Venues

Zhe J Liu (Zhe Liu)