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Johannes Söding (Johannes Soeding)

ORCID

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 19

Top Venues

NAR genomics and bioinformatics

Nature biotechnology

eLife

Nature communications

Max Planck Institute for Biophysical Chemistry

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Max Planck Institute for Biophysical Chemistry Jan 1o 2014

Germany

Group leader :: Quantitiative and computational biology

Publications

Venket Raghavan, Gregor Eichele, Otto Larink, Eli Levy Karin, Johannes Söding
RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton. NAR genomics and bioinformatics 5 (1) (2023)
Venket Raghavan, Gregor Eichele, Otto Larink, Eli Levy Karin, Johannes Söding
RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton. NAR genomics and bioinformatics 5 (1) (2023)
Simon H Stitzinger, Salma Sohrabi-Jahromi, Johannes Söding
Cooperativity boosts affinity and specificity of proteins with multiple RNA-binding domains. NAR genomics and bioinformatics 5 (2) (2023)
Sushmita Basu, Bi Zhao, Bálint Biró, Eshel Faraggi, Jörg Gsponer, Gang Hu, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Johannes Söding, Martin Steinegger, Duolin Wang, Kui Wang, Dong Xu, Jian Zhang, Lukasz Kurgan
DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options. Nucleic acids research (2023)
Michel van Kempen, Stephanie S Kim, Charlotte Tumescheit, Milot Mirdita, Jeongjae Lee, Cameron L M Gilchrist, Johannes Söding, Martin Steinegger
Fast and accurate protein structure search with Foldseek. Nature biotechnology (2023)
Anna V Luebben, Daniel Bender, Stefan Becker, Lisa M Crowther, Ilka Woiwode, Kay Hofmann, Johannes Söding, Henry Gerd Klemp, Cristina Bellotti, Andreas Stäuble, Tian Qiu, Rahul Singh Kathayat, Bryan C Dickinson, Jutta Gärtner, George M Sheldrick, Ralph Krätzner, Robert Steinfeld
Cln5 represents a new type of cysteine-based S -depalmitoylase linked to neurodegeneration. Science advances 8 (15) (2022)
Zhan Qi, Christophe Jung, Peter Bandilla, Claudia Ludwig, Mark Heron, Anja Sophie Kiesel, Mariam Museridze, Julia Philippou-Massier, Miroslav Nikolov, Alessio Renna Max Schnepf, Ulrich Unnerstall, Stefano Ceolin, Bettina Mühlig, Nicolas Gompel, Johannes Söding, Ulrike Gaul
Large-scale analysis of Drosophila core promoter function using synthetic promoters. Molecular systems biology 18 (2) (2022)
Saikat Banerjee, Franco L Simonetti, Kira E Detrois, Anubhav Kaphle, Raktim Mitra, Rahul Nagial, Johannes Söding
Tejaas: reverse regression increases power for detecting trans-eQTLs. Genome biology 22 (1) (2021)
Wanwan Ge, Markus Meier, Christian Roth, Johannes Söding
Bayesian Markov models improve the prediction of binding motifs beyond first order. NAR genomics and bioinformatics 3 (2) (2021)
Jinmi Choi, Kseniia Lysakovskaia, Grégoire Stik, Carina Demel, Johannes Söding, Tian V Tian, Thomas Graf, Patrick Cramer
Evidence for additive and synergistic action of mammalian enhancers during cell fate determination. eLife 10 (2021)
Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J Haunsberger, Johannes Söding
HH-suite3 for fast remote homology detection and deep protein annotation. BMC bioinformatics 20 (1) (2019)
Martin Steinegger, Milot Mirdita, Johannes Söding
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature methods 16 (7) (2019)
Tina Ukmar-Godec, Saskia Hutten, Matthew P Grieshop, Nasrollah Rezaei-Ghaleh, Maria-Sol Cima-Omori, Jacek Biernat, Eckhard Mandelkow, Johannes Söding, Dorothee Dormann, Markus Zweckstetter
Lysine/RNA-interactions drive and regulate biomolecular condensation. Nature communications 10 (1) (2019)
Saikat Banerjee, Lingyao Zeng, Heribert Schunkert, Johannes Söding
Bayesian multiple logistic regression for case-control GWAS. PLoS genetics 14 (12) (2018)
Chen Keasar, Liam J McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B K Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A Khoury, Chris Kieslich, David E Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popović, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanisław Ołdziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, null null, Silvia N Crivelli
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific reports 8 (1) (2018)
Martin Steinegger, Johannes Söding
Clustering huge protein sequence sets in linear time. Nature communications 9 (1) (2018)
Susann Vorberg, Stefan Seemayer, Johannes Söding
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS computational biology 14 (11) (2018)
Martin Steinegger, Johannes Söding
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature biotechnology 35 (11) (2017)
Vikram Alva, Johannes Söding, Andrei N Lupas
A vocabulary of ancient peptides at the origin of folded proteins. eLife 4 (2015)

Johannes Söding.css-eqlu8i{font-size:small;padding-left:4px;} (Johannes Soeding)

Publication Activity (10 Years)

Top Topics

Top Venues

Johannes Söding (Johannes Soeding)