Jose Juan Almagro Armenteros (José Juan Almagro Armenteros, Jose J Almagro Armenteros)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 7

Top Topics

Escherichia Coli

Autism Spectrum Disorder

Antibiotic Resistance Genes

Top Venues

Nature biotechnology

NAR genomics and bioinformatics

bioRxiv : the preprint server for biology

BMJ open respiratory research

This page only lists publications with an associated author ORCID identifier.

Publications

Alfred Ferrer Florensa, Jose Juan Almagro Armenteros, Henrik Nielsen, Frank Møller Aarestrup, Philip Thomas Lanken Conradsen Clausen
SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects. NAR genomics and bioinformatics 6 (3) (2024)
Alfred Ferrer Florensa, Jose Juan Almagro Armenteros, Henrik Nielsen, Frank Møller Aarestrup, Philip Thomas Lanken Conradsen Clausen
SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects. NAR genomics and bioinformatics 6 (3) (2024)
Minji Kang, Jose Juan Almagro Armenteros, Gunsagar Singh Gulati, Rachel Gleyzer, Susanna Avagyan, Erin L Brown, Wubing Zhang, Abul Usmani, Noah J Earland, Zhenqin Wu, James Y Zou, Ryan C Fields, David Y Chen, Aadel A Chaudhuri, Aaron M Newman
Mapping single-cell developmental potential in health and disease with interpretable deep learning. bioRxiv : the preprint server for biology (2024)
Vineet Thumuluri, Hannah-Marie Martiny, Jose Juan Almagro Armenteros, Jesper Salomon, Henrik Nielsen, Alexander Rosenberg Johansen
NetSolP: predicting protein solubility in Escherichia coli using language models. Bioinformatics (Oxford, England) 38 (4) (2022)
Felix G Teufel, Jose Juan Almagro Armenteros, Alexander Rosenberg Johansen, Magnús Halldór Gíslason, Silas Irby Pihl, Konstantinos D Tsirigos, Ole Winther, Soren Brunak, Gunnar von Heijne, Henrik Nielsen
SignalP 6.0 predicts all five types of signal peptides using protein language models. Nature biotechnology 40 (7) (2022)
Zitta Barrella Harboe, Sebastian Rask Hamm, Laura Pérez-Alós, Pradeesh Sivapalan, Helene Priemé, Torgny Wilcke, Peter Kjeldgaard, Saher Shaker, Alexander Svorre Jordan, Dina Leth Møller, Line Dam Heftdal, Johannes Roth Madsen, Rafael Bayarri-Olmos, Cecilie Bo Hansen, Mia Marie Pries-Heje, Rasmus Bo Hasselbalch, Kamille Fogh, Jose Juan Almagro Armenteros, Linda M Hilsted, Erik Sørensen, Birgitte Lindegaard, Andrea Browatzki, Tor Biering-Sorensen, Ruth Frikke-Schmidt, Sisse Rye Ostrowski, Kasper Karmark Iversen, Henning Bundgaard, Susanne Dam Nielsen, Peter Garred, Jens-Ulrik Stæhr Jensen
Antibody responses and risk factors associated with impaired immunological outcomes following two doses of BNT162b2 COVID-19 vaccination in patients with chronic pulmonary diseases. BMJ open respiratory research 9 (1) (2022)
Jakob Nybo Nissen, Joachim Johansen, Rosa Lundbye Allesøe, Casper Kaae Sønderby, Jose Juan Almagro Armenteros, Christopher Heje Grønbech, Lars Juhl Jensen, Henrik Bjørn Nielsen, Thomas Nordahl Petersen, Ole Winther, Simon Rasmussen
Improved metagenome binning and assembly using deep variational autoencoders. Nature biotechnology 39 (5) (2021)