Joshua D Campbell (Joshua Campbell)

ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 28

Top Venues

Nature communications

Science advances

Genome biology

bioRxiv : the preprint server for biology

Dana Farber Cancer Institute

Boston University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Dana Farber Cancer Institute

United States

Postdoctoral Fellow :: Medical Oncology

Broad Institute

United States

Affiliate :: Cancer Program

Education History

Boston University

United States

PHD :: Engineering

Anderson University

United States

BSC :: Biology, Computer Science, Mathematics

Publications

Irzam Sarfraz, Yichen Wang, Amulya Shastry, Wei Kheng Teh, Artem Sokolov, Brian R Herb, Heather H Creasy, Isaac Virshup, Ruben Dries, Kylee Degatano, Anup Mahurkar, Daniel J Schnell, Pedro Madrigal, Jason Hilton, Nils Gehlenborg, Timothy Tickle, Joshua D Campbell
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data. Genome biology 25 (1) (2024)
Adri Chakraborty, Alex Kim, Salam AlAbdullatif, Joshua D Campbell, Yuriy O Alekseyev, Ulas Kaplan, Vrinda Dambal, Giovanni Ligresti, Maria Trojanowska
Endothelial Erg Regulates Expression of Pulmonary Lymphatic Junctional and Inflammation Genes in Mouse Lungs Impacting Lymphatic Transport. Research square (2024)
Yanan Sun, Hajar Benmhammed, Salam Al Abdullatif, Alawi H Habara, Eric Fu, Jordan Brady, Christopher Williams, Adrian Ilinski, Anusha Sharma, Kiana Mahdaviani, Yuriy O Alekseyev, Joshua D Campbell, Martin H Steinberg, Shuaiying Cui
PGC-1α agonism induces fetal hemoglobin and exerts antisickling effects in sickle cell disease. Science advances 10 (31) (2024)
Irzam Sarfraz, Yichen Wang, Amulya Shastry, Wei Kheng Teh, Artem Sokolov, Brian R Herb, Heather H Creasy, Isaac Virshup, Ruben Dries, Kylee Degatano, Anup Mahurkar, Daniel J Schnell, Pedro Madrigal, Jason Hilton, Nils Gehlenborg, Timothy Tickle, Joshua D Campbell
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data. Genome biology 25 (1) (2024)
Yanan Sun, Hajar Benmhammed, Salam Al Abdullatif, Alawi H Habara, Eric Fu, Jordan Brady, Christopher Williams, Adrian Ilinski, Anusha Sharma, Kiana Mahdaviani, Yuriy O Alekseyev, Joshua D Campbell, Martin H Steinberg, Shuaiying Cui
PGC-1α agonism induces fetal hemoglobin and exerts antisickling effects in sickle cell disease. Science advances 10 (31) (2024)
Irzam Sarfraz, Yichen Wang, Amulya Shastry, Wei Kheng Teh, Artem Sokolov, Brian R Herb, Heather H Creasy, Isaac Virshup, Ruben Dries, Kylee Degatano, Anup Mahurkar, Daniel J Schnell, Pedro Madrigal, Jason Hilton, Nils Gehlenborg, Timothy Tickle, Joshua D Campbell
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data. Genome biology 25 (1) (2024)
Adri Chakraborty, Alex Kim, Salam AlAbdullatif, Joshua D Campbell, Yuriy O Alekseyev, Ulas Kaplan, Vrinda Dambal, Giovanni Ligresti, Maria Trojanowska
Endothelial Erg Regulates Expression of Pulmonary Lymphatic Junctional and Inflammation Genes in Mouse Lungs Impacting Lymphatic Transport. Research square (2024)
Yanan Sun, Hajar Benmhammed, Salam Al Abdullatif, Alawi H Habara, Eric Fu, Jordan Brady, Christopher Williams, Adrian Ilinski, Anusha Sharma, Kiana Mahdaviani, Yuriy O Alekseyev, Joshua D Campbell, Martin H Steinberg, Shuaiying Cui
PGC-1α agonism induces fetal hemoglobin and exerts antisickling effects in sickle cell disease. Science advances 10 (31) (2024)
Yuan Yin, Masanao Yajima, Joshua D Campbell
Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro. bioRxiv : the preprint server for biology (2023)
Yuan Yin, Masanao Yajima, Joshua D Campbell
Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro. bioRxiv : the preprint server for biology (2023)
Aaron Chevalier, Tao Guo, Natasha Q Gurevich, Jingwen Xu, Masanao Yajima, Joshua D Campbell
Characterization of highly active mutational signatures in tumors from a large Chinese population. medRxiv : the preprint server for health sciences (2023)
Jane Yanagawa, Linh M Tran, Ramin Salehi-Rad, Raymond J Lim, Camelia Dumitras, Eileen Fung, William Dean Wallace, Ashley Elizabeth Prosper, Gregory A Fishbein, Conor Shea, Rui Hong, Bitta Kahangi, John J Deng, Adam C Gower, Bin Liu, Joshua D Campbell, Sarah A Mazzilli, Jennifer E Beane-Ebel, Humam Kadara, Marc E Lenburg, Avrum E Spira, Denise R Aberle, Kostyantyn Krysan, Steven M Dubinett
Single-cell characterization of pulmonary nodules implicates suppression of immunosurveillance across early stages of lung adenocarcinoma. Cancer research (2023)
Yuan Yin, Masanao Yajima, Joshua D Campbell
Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro. bioRxiv : the preprint server for biology (2023)
Marc A Vittoria, Nathan Kingston, Kristyna Kotynkova, Eric Xia, Rui Hong, Lee Huang, Shayna McDonald, Andrew M Tilston-Lunel, Revati Darp, Joshua D Campbell, Deborah Lang, Xiaowei Xu, Yvonne J K Edwards, Xaralabos Varelas, Neil J Ganem
Inactivation of the Hippo tumor suppressor pathway promotes melanoma. Nature communications 13 (1) (2022)
Kim Vanuytsel, Carlos Villacorta-Martin, Jonathan Lindstrom-Vautrin, Zhe Wang, Wilfredo F Garcia-Beltran, Vladimir Vrbanac, Dylan Parsons, Evan C Lam, Taylor M Matte, Todd W Dowrey, Sara S Kumar, Mengze Li, Feiya Wang, Anthony K Yeung, Gustavo Mostoslavsky, Ruben Dries, Joshua D Campbell, Anna C Belkina, Alejandro B Balazs, George J Murphy
Multi-modal profiling of human fetal liver hematopoietic stem cells reveals the molecular signature of engraftment. Nature communications 13 (1) (2022)
Rui Hong, Yusuke Koga, Shruthi Bandyadka, Anastasia Leshchyk, Yichen Wang, Vidya Akavoor, Xinyun Cao, Irzam Sarfraz, Zhe Wang, Salam Alabdullatif, Frederick Jansen, Masanao Yajima, William Evan Johnson, Joshua D Campbell
Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data. Nature communications 13 (1) (2022)
Thabet Alhousami, Michael Diny, Faiza Ali, Jennifer Shin, Gaurav Kumar, Vikas Kumar, Joshua D Campbell, Vikki Noonan, Glenn J Hanna, Gerald V Denis, Stephano Monti, Maria A Kukuruzinska, Xaralabos Varelas, Manish V Bais
Inhibition of LSD1 Attenuates Oral Cancer Development and Promotes Therapeutic Efficacy of Immune Checkpoint Blockade and YAP/TAZ Inhibition. Molecular cancer research : MCR 20 (5) (2022)
Ali Lashkaripour, Christopher Rodriguez, Noushin Mehdipour, Rizki Mardian, David P McIntyre, Luis Ortiz, Joshua D Campbell, Douglas M Densmore
Machine learning enables design automation of microfluidic flow-focusing droplet generation. Nature communications 12 (1) (2021)
Aaron Chevalier, Shiyi Yang, Zainab Khurshid, Nathan Sahelijo, Tong Tong, Jonathan H Huggins, Masanao Yajima, Joshua D Campbell
The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the Discovery, Prediction, and Exploration of Mutational Signatures. Cancer research 81 (23) (2021)
Ryan J Quinton, Amanda DiDomizio, Marc A Vittoria, Kristýna Kotýnková, Carlos J Ticas, Sheena Patel, Yusuke Koga, Jasmine Vakhshoorzadeh, Nicole Hermance, Taruho S Kuroda, Neha Parulekar, Alison M Taylor, Amity L Manning, Joshua D Campbell, Neil J Ganem
Whole-genome doubling confers unique genetic vulnerabilities on tumour cells. Nature 590 (7846) (2021)
Jian Carrot-Zhang, Giovanny Soca-Chafre, Nick Patterson, Aaron R Thorner, Anwesha Nag, Jacqueline Watson, Giulio Genovese, July Rodriguez, Maya K Gelbard, Luis Corrales-Rodriguez, Yoichiro Mitsuishi, Gavin Ha, Joshua D Campbell, Geoffrey R Oxnard, Arrieta Oscar, Andres F Cardona, Alexander Gusev, Matthew Meyerson
Genetic Ancestry Contributes to Somatic Mutations in Lung Cancers from Admixed Latin American Populations. Cancer discovery 11 (3) (2020)
Chinaemere Igwebuike, Julia Yaglom, Leah Huiting, Hui Feng, Joshua D Campbell, Zhiyong Wang, Andrea Havasi, David Pimentel, Michael Y Sherman, Steven C Borkan
Cross organelle stress response disruption promotes gentamicin-induced proteotoxicity. Cell death & disease 11 (4) (2020)
Shivanshu Awasthi, Anders E Berglund, Julieta Abraham-Miranda, Robert J Rounbehler, Kevin H Kensler, Amparo Serna, Adriana Vidal, Sungyong You, Michael R Freeman, Elai Davicioni, Yang Liu, R Jeffrey Karnes, Eric A Klein, Robert B Den, Bruce J Trock, Joshua D Campbell, David J Einstein, Raavi Gupta, Steven P Balk, Priti Lal, Jong Y Park, John L Cleveland, Timothy R Rebbeck, Stephen J Freedland, Kosj Yamoah
Comparative Genomics Reveals Distinct Immune-oncologic Pathways in African American Men with Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (1) (2020)
Yusuke Koga, Hanbing Song, Zachary R Chalmers, Justin Newberg, Eejung Kim, Jian Carrot-Zhang, Daphnee Piou, Paz Polak, Sarki A Abdulkadir, Elad Ziv, Matthew Meyerson, Garrett M Frampton, Joshua D Campbell, Franklin W Huang
Genomic Profiling of Prostate Cancers from Men with African and European Ancestry. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (17) (2020)
Shiyi Yang, Sean E Corbett, Yusuke Koga, Zhe Wang, W Evan Johnson, Masanao Yajima, Joshua D Campbell
Decontamination of ambient RNA in single-cell RNA-seq with DecontX. Genome biology 21 (1) (2020)
Jennifer E Beane-Ebel, Sarah A Mazzilli, Joshua D Campbell, Grant Duclos, Kostyantyn Krysan, Christopher Moy, Catalina Perdomo, Michael Schaffer, Gang Liu, Sherry Zhang, Hanqiao Liu, Jessica Vick, Samjot S Dhillon, Suso J Platero, Steven M Dubinett, Christopher Stevenson, Mary E Reid, Marc E Lenburg, Avrum E Spira
Molecular subtyping reveals immune alterations associated with progression of bronchial premalignant lesions. Nature communications 10 (1) (2019)
Grant E Duclos, Vitor H Teixeira, Patrick Autissier, Yaron B Gesthalter, Marjan A Reinders-Luinge, Robert Terrano, Yves M Dumas, Hanqiao Liu, Sarah A Mazzilli, Corry-Anke Brandsma, Maarten van den Berge, Samuel M Janes, Hidde J Haisma, Marc E Lenburg, Avrum Spira, Joshua D Campbell, Jennifer E Beane-Ebel
Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution. Science advances 5 (12) (2019)
Joshua D Campbell, Anton Alexandrov, Jaegil Kim, Jeremiah Wala, Alice H Berger, Chandra Sekhar Pedamallu, Sachet A Shukla, Guangwu Guo, Angela N Brooks, Bradley A Murray, Marcin Imielinski, Xin Hu, Shiyun Ling, Rehan Akbani, Mara Rosenberg, Carrie Cibulskis, Aruna Ramachandran, Eric A Collisson, David J Kwiatkowski, Michael S Lawrence, John N Weinstein, Roel G W Verhaak, Catherine J Wu, Peter S Hammerman, Andrew D Cherniack, Gad Getz, null null, Maxim N Artyomov, Robert Schreiber, Ramaswamy Govindan, Matthew L Meyerson
Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas. Nature genetics 48 (6) (2016)
Joshua D Campbell, Gang Liu, Lingqi Luo, Ji Xiao, Joseph Gerrein, Brenda Juan-Guardela, John Tedrow, Yuriy O Alekseyev, Ivana V Yang, Mick Correll, Mark Geraci, John Quackenbush, Frank Sciurba, David A Schwartz, Naftali Kaminski, W Evan Johnson, Stefano Monti, Avrum Spira, Jennifer Beane, Marc E Lenburg
Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data. RNA (New York, N.Y.) 21 (2) (2014)

Joshua D Campbell.css-eqlu8i{font-size:small;padding-left:4px;} (Joshua Campbell)

Publication Activity (10 Years)

Top Topics

Top Venues

Joshua D Campbell (Joshua Campbell)