Joshua Xu

ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 22

Top Venues

Experimental biology and medicine (Maywood, N.J.)

Nature biotechnology

Scientific data

Genome biology

This page only lists publications with an associated author ORCID identifier.

Publications

Binsheng Gong, Dan Li, Paweł Piotr Łabaj, Bohu Pan, Natalia Novoradovskaya, Danielle Thierry-Mieg, Jean Thierry-Mieg, Guangchun Chen, Anne Bergstrom Lucas, Jennifer S LoCoco, Todd A Richmond, Elizabeth Tseng, Rebecca Kusko, Scott Happe, Timothy R Mercer, Carlos Pabón-Peña, Michael Salmans, Hagen U Tilgner, Wenzhong Xiao, Donald J Johann, Wendell D Jones, Weida Tong, Christopher E Mason, David P Kreil, Joshua Xu
Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing. Scientific data 11 (1) (2024)
Leihong Wu, Magnus Gray, Oanh Dang, Joshua Xu, Hong Fang, Weida Tong
RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling. Experimental biology and medicine (Maywood, N.J.) 248 (21) (2024)
Leihong Wu, Magnus Gray, Oanh Dang, Joshua Xu, Hong Fang, Weida Tong
RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling. Experimental biology and medicine (Maywood, N.J.) 248 (21) (2024)
Leihong Wu, Magnus Gray, Oanh Dang, Joshua Xu, Hong Fang, Weida Tong
RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling. Experimental biology and medicine (Maywood, N.J.) 248 (21) (2024)
Leihong Wu, Magnus Gray, Oanh Dang, Joshua Xu, Hong Fang, Weida Tong
RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling. Experimental biology and medicine (Maywood, N.J.) 248 (21) (2024)
Binsheng Gong, Dan Li, Paweł Piotr Łabaj, Bohu Pan, Natalia Novoradovskaya, Danielle Thierry-Mieg, Jean Thierry-Mieg, Guangchun Chen, Anne Bergstrom Lucas, Jennifer S LoCoco, Todd A Richmond, Elizabeth Tseng, Rebecca Kusko, Scott Happe, Timothy R Mercer, Carlos Pabón-Peña, Michael Salmans, Hagen U Tilgner, Wenzhong Xiao, Donald J Johann, Wendell D Jones, Weida Tong, Christopher E Mason, David P Kreil, Joshua Xu
Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing. Scientific data 11 (1) (2024)
Leihong Wu, Magnus Gray, Oanh Dang, Joshua Xu, Hong Fang, Weida Tong
RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling. Experimental biology and medicine (Maywood, N.J.) (2024)
Leihong Wu, Magnus Gray, Oanh Dang, Joshua Xu, Hong Fang, Weida Tong
RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling. Experimental biology and medicine (Maywood, N.J.) 248 (21) (2024)
Yuanting Zheng, Ya-Qing Liu, Jingcheng Yang, Lianhua Dong, Rui Zhang, Sha Tian, Ying Yu, Luyao Ren, Wanwan Hou, Feng Zhu, Yuanbang Mai, Jinxiong Han, Lijun Zhang, Hui Jiang, Ling Lin, Jingwei Lou, Ruiqiang Li, Jingchao Lin, Huafen Liu, Ziqing Kong, Depeng Wang, Fangping Dai, Ding Bao, Zehui Cao, Qiaochu Chen, Qing-Wang Chen, Xingdong Chen, Yuechen Gao, He Jiang, Bin Li, Bingying Li, Jing-Jing Li, Ruimei Liu, Tao Qing, Erfei Shang, Jun Shang, Shanyue Sun, Haiyan Wang, Xiaolin Wang, Naixin Zhang, Peipei Zhang, Ruolan Zhang, Sibo Zhu, Andreas Scherer, Jiucun Wang, Jing Wang, Yinbo Huo, Gang Liu, Chengming Cao, Li Shao, Joshua Xu, Huixiao Hong, Wenming Xiao, Xiaozhen Liang, Daru Lu, Li Jin, Weida Tong, Chen Ding, Jinming Li, Xiang Fang, Le-Ming Shi
Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials. Nature biotechnology (2023)
Dan Li, Dong Wang, Donald J Johann, Huixiao Hong, Joshua Xu
Assessments of tumor mutational burden estimation by targeted panel sequencing: A comprehensive simulation analysis. Experimental biology and medicine (Maywood, N.J.) (2023)
Ying Yu, Wanwan Hou, Ya-Qing Liu, Haiyan Wang, Lianhua Dong, Yuanbang Mai, Qing-Wang Chen, Zhihui Li, Shanyue Sun, Jingcheng Yang, Zehui Cao, Peipei Zhang, Yi Zi, Ruimei Liu, Jian Gao, Naixin Zhang, Jing-Jing Li, Luyao Ren, He Jiang, Jun Shang, Sibo Zhu, Xiaolin Wang, Tao Qing, Ding Bao, Bingying Li, Bin Li, Chen Suo, Yan Pi, Xia Wang, Fangping Dai, Andreas Scherer, Pirkko Mattila, Jinxiong Han, Lijun Zhang, Hui Jiang, Danielle Thierry-Mieg, Jean Thierry-Mieg, Wenming Xiao, Huixiao Hong, Weida Tong, Jing Wang, Jinming Li, Xiang Fang, Li Jin, Joshua Xu, Feng Qian, Rui Zhang, Le-Ming Shi, Yuanting Zheng
Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling. Nature biotechnology (2023)
Ying Yu, Wanwan Hou, Ya-Qing Liu, Haiyan Wang, Lianhua Dong, Yuanbang Mai, Qing-Wang Chen, Zhihui Li, Shanyue Sun, Jingcheng Yang, Zehui Cao, Peipei Zhang, Yi Zi, Ruimei Liu, Jian Gao, Naixin Zhang, Jing-Jing Li, Luyao Ren, He Jiang, Jun Shang, Sibo Zhu, Xiaolin Wang, Tao Qing, Ding Bao, Bingying Li, Bin Li, Chen Suo, Yan Pi, Xia Wang, Fangping Dai, Andreas Scherer, Pirkko Mattila, Jinxiong Han, Lijun Zhang, Hui Jiang, Danielle Thierry-Mieg, Jean Thierry-Mieg, Wenming Xiao, Huixiao Hong, Weida Tong, Jing Wang, Jinming Li, Xiang Fang, Li Jin, Joshua Xu, Feng Qian, Rui Zhang, Le-Ming Shi, Yuanting Zheng
Author Correction: Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling. Nature biotechnology (2023)
Yifan Zhang, Thomas M Blomquist, Rebecca Kusko, Daniel Stetson, Zhihong Zhang, Lihui Yin, Robert Sebra, Binsheng Gong, Jennifer S Lococo, Vinay K Mittal, Natalia Novoradovskaya, Ji-Youn Yeo, Nicole Dominiak, Jennifer Hipp, Amelia Raymond, Fujun Qiu, Hanane Arib, Melissa L Smith, Jay E Brock, Daniel H Farkas, Daniel J Craig, Erin L Crawford, Dan Li, Tom Morrison, Nikola Tom, Wenzhong Xiao, Mary Yang, Christopher E Mason, Todd A Richmond, Wendell Jones, Donald J Johann, Leming Shi, Weida Tong, James C Willey, Joshua Xu
Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples. Genome biology 23 (1) (2022)
Binsheng Gong, Rebecca Kusko, Wendell D Jones, Weida Tong, Joshua Xu
Ultra-deep multi-oncopanel sequencing of benchmarking samples with a wide range of variant allele frequencies. Scientific data 9 (1) (2022)
Binsheng Gong, Ira W Deveson, Timothy Mercer, Donald J Johann, Wendell Jones, Weida Tong, Joshua Xu
Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity. Scientific data 9 (1) (2022)
Binsheng Gong, Dan Li, Rebecca Kusko, Natalia Novoradovskaya, Yifan Zhang, Shangzi Wang, Carlos Pabón-Peña, Zhihong Zhang, Kevin Lai, Wanshi Cai, Jennifer S LoCoco, Eric Lader, Todd A Richmond, Vinay K Mittal, Liang-Chun Liu, Donald J Johann, James C Willey, Pierre R Bushel, Ying Yu, Chang Xu, Guangchun Chen, Daniel Burgess, Simon Cawley, Kristina Giorda, Nathan Haseley, Fujun Qiu, Katherine Wilkins, Hanane Arib, Claire Attwooll, Kevin Babson, Longlong Bao, Wenjun Bao, Anne Bergstrom Lucas, Hunter Best, Ambica Bhandari, Halil Bisgin, James Blackburn, Thomas M Blomquist, Lisa Boardman, Blake Burgher, Daniel J Butler, Chia-Jung Chang, Alka Chaubey, Tao Chen, Marco Chierici, Christopher R Chin, Devin Close, Jeffrey Conroy, Jessica Cooley Coleman, Daniel J Craig, Erin Crawford, Angela Del Pozo, Ira W Deveson, Daniel Duncan, Agda Karina Eterovic, Xiaohui Fan, Jonathan Foox, Cesare Furlanello, Abhisek Ghosal, Sean Glenn, Meijian Guan, Christine Haag, Xinyi Hang, Scott Happe, Brittany Hennigan, Jennifer Hipp, Huixiao Hong, Kyle Horvath, Jianhong Hu, Li-Yuan Hung, Mirna Jarosz, Jennifer Kerkhof, Benjamin Kipp, David Philip Kreil, Paweł Łabaj, Pablo Lapunzina, Peng Li, Quan-Zhen Li, Weihua Li, Zhiguang Li, Yu Liang, Shaoqing Liu, Zhichao Liu, Charles Ma, Narasimha Marella, Rubén Martín-Arenas, Dalila B Megherbi, Qingchang Meng, Piotr A Mieczkowski, Tom Morrison, Donna Muzny, Baitang Ning, Barbara L Parsons, Cloud P Paweletz, Mehdi Pirooznia, Wubin Qu, Amelia Raymond, Paul Rindler, Rebecca Ringler, Bekim Sadikovic, Andreas Scherer, Egbert Schulze, Robert Sebra, Rita Shaknovich, Qiang Shi, Tieliu Shi, Juan Carlos Silla-Castro, Melissa Smith, Mario Solís López, Ping Song, Daniel Stetson, Maya Strahl, Alan Stuart, Julianna Supplee, Philippe Szankasi, Haowen Tan, Lin-Ya Tang, Yonghui Tao, Shraddha Thakkar, Danielle Thierry-Mieg, Jean Thierry-Mieg, Venkat J Thodima, David Thomas, Boris Tichý, Nikola Tom, Elena Vallespin Garcia, Suman Verma, Kimbley Walker, Charles Wang, Junwen Wang, Yexun Wang, Zhining Wen, Valtteri Wirta, Leihong Wu, Chunlin Xiao, Wenzhong Xiao, Shibei Xu, Mary Yang, Jianming Ying, Shun H Yip, Guangliang Zhang, Sa Zhang, Meiru Zhao, Yuanting Zheng, Xiaoyan Zhou, Christopher E Mason, Timothy Mercer, Weida Tong, Leming Shi, Wendell Jones, Joshua Xu
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions. Genome biology 22 (1) (2021)
Ira W Deveson, Binsheng Gong, Kevin Lai, Jennifer S LoCoco, Todd A Richmond, Jeoffrey Schageman, Zhihong Zhang, Natalia Novoradovskaya, James C Willey, Wendell D Jones, Rebecca Kusko, Guangchun Chen, Bindu Swapna Madala, James Blackburn, Igor Stevanovski, Ambica Bhandari, Devin Close, Jeffrey Conroy, Michael Hubank, Narasimha Marella, Piotr A Mieczkowski, Fujun Qiu, Robert Sebra, Daniel Stetson, Lihyun Sun, Philippe Szankasi, Haowen Tan, Lin-Ya Tang, Hanane Arib, Hunter Best, Blake Burgher, Pierre R Bushel, Fergal Casey, Simon Cawley, Chia-Jung Chang, Jonathan Choi, Jorge Dinis, Daniel Duncan, Agda Karina Eterovic, Liang Feng, Abhisek Ghosal, Kristina Giorda, Sean Glenn, Scott Happe, Nathan Haseley, Kyle Horvath, Li-Yuan Hung, Mirna Jarosz, Garima Kushwaha, Dan Li, Quan-Zhen Li, Zhiguang Li, Liang-Chun Liu, Zhichao Liu, Charles Ma, Christopher E Mason, Dalila B Megherbi, Tom Morrison, Carlos Pabón-Peña, Mehdi Pirooznia, Paula Z Proszek, Amelia Raymond, Paul Rindler, Rebecca Ringler, Andreas Scherer, Rita Shaknovich, Tieliu Shi, Melissa Smith, Ping Song, Maya Strahl, Venkat J Thodima, Nikola Tom, Suman Verma, Jiashi Wang, Leihong Wu, Wenzhong Xiao, Chang Xu, Mary Yang, Guangliang Zhang, Sa Zhang, Yilin Zhang, Leming Shi, Weida Tong, Donald J Johann, Timothy R Mercer, Joshua Xu, null null
Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology. Nature biotechnology 39 (9) (2021)
Hong Fang, Stephen Harris, Zhichao Liu, Shraddha Thakkar, Junshuang Yang, Taylor Ingle, Joshua Xu, Lawrence Lesko, Lilliam Rosario, Weida Tong
FDALabel for drug repurposing studies and beyond. Nature biotechnology 38 (12) (2021)
Halil Bisgin, Tanmay Bera, Hongjian Ding, Howard G Semey, Leihong Wu, Zhichao Liu, Amy E Barnes, Darryl A Langley, Monica Pava-Ripoll, Himansu J Vyas, Weida Tong, Joshua Xu
Comparing SVM and ANN based Machine Learning Methods for Species Identification of Food Contaminating Beetles. Scientific reports 8 (1) (2018)
Zhichao Liu, Joshua Xu, Zhining Wen
Advancing Genomics for Drug Development and Safety Evaluation. International journal of genomics 2018 (2018)
Su Inn Park, Halil Bisgin, Hongjian Ding, Howard G Semey, Darryl A Langley, Weida Tong, Joshua Xu
Correction: Species Identification of Food Contaminating Beetles by Recognizing Patterns in Microscopic Images of Elytra Fragments. PloS one 11 (9) (2016)
Su Inn Park, Halil Bisgin, Hongjian Ding, Howard G Semey, Darryl A Langley, Weida Tong, Joshua Xu
Species Identification of Food Contaminating Beetles by Recognizing Patterns in Microscopic Images of Elytra Fragments. PloS one 11 (6) (2016)
Li Pang, Beverly Word, Joshua Xu, Honggang Wang, George Hammons, Shiew-Mei Huang, Beverly Lyn-Cook
ATP-Binding Cassette Genes Genotype and Expression: A Potential Association with Pancreatic Cancer Development and Chemoresistance? Gastroenterology research and practice 2014 (2014)

Joshua Xu.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Joshua Xu