Jun Zhu

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Venues

Nature communications

Cancer research communications

Cancers

Nature medicine

Icahn School of Medicine at Mount Sinai

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Icahn School of Medicine at Mount Sinai

United States

Professor :: Genetics and Genomic Sciences

Sage Bionetworks

United States

Director :: Network Biology

Rosetta Inpharmatics/Merck & CO., INC

United States

Associate Scientific Director :: Genetics

Amgen Inc

United States

Computational Biologist :: Computational Biology

Publications

Koichi Ito, Ibuki Harada, Criseyda Martinez, Katsutoshi Sato, Eunjee Lee, Elisa Port, Jessica H Byerly, Anupma Nayak, Ekta Tripathi, Jun Zhu, Hanna Y Irie
MARCH2, a Novel Oncogene-regulated SNAIL E3 Ligase, Suppresses Triple-negative Breast Cancer Metastases. Cancer research communications 4 (3) (2024)
Matthew D Galsky, Siamak Daneshmand, Sudeh Izadmehr, Edgar G Kozlova, Kevin G Chan, Sara Lewis, Bassam El Achkar, Tanya B Dorff, Jeremy Paul Cetnar, Brock O Neil, Anishka D'Souza, Ronac Mamtani, Christos E Kyriakopoulos, Tomi Jun, Anisha Mahalya Gogerly-Moragoda, Rachel Brody, Hui Xie, Kai Nie, Geoffrey Kelly, Amir Horowitz, Yayoi Kinoshita, Ethan Ellis, Yohei Nose, Giorgio Ioannou, Rafael Cabal, Diane M Del Valle, G Kenneth Haines, Li Wang, Kent W Mouw, Robert M Samstein, Reza Mehrazin, Nina Bhardwaj, Menggang Yu, Qianqian Zhao, Seunghee Kim-Schulze, Robert P Sebra, Jun Zhu, Sacha Gnjatic, John Sfakianos, Sumanta Kumar Pal
Author Correction: Gemcitabine and cisplatin plus nivolumab as organ-sparing treatment for muscle-invasive bladder cancer: a phase 2 trial. Nature medicine (2024)
Koichi Ito, Ibuki Harada, Criseyda Martinez, Katsutoshi Sato, Eunjee Lee, Elisa Port, Jessica H Byerly, Anupma Nayak, Ekta Tripathi, Jun Zhu, Hanna Y Irie
MARCH2, a novel oncogene-regulated SNAIL E3 ligase, suppresses triple negative breast cancer metastases. Cancer research communications (2024)
Koichi Ito, Ibuki Harada, Criseyda Martinez, Katsutoshi Sato, Eunjee Lee, Elisa Port, Jessica H Byerly, Anupma Nayak, Ekta Tripathi, Jun Zhu, Hanna Y Irie
MARCH2, a Novel Oncogene-regulated SNAIL E3 Ligase, Suppresses Triple-negative Breast Cancer Metastases. Cancer research communications 4 (3) (2024)
Koichi Ito, Ibuki Harada, Criseyda Martinez, Katsutoshi Sato, Eunjee Lee, Elisa Port, Jessica H Byerly, Anupma Nayak, Ekta Tripathi, Jun Zhu, Hanna Y Irie
MARCH2, a Novel Oncogene-regulated SNAIL E3 Ligase, Suppresses Triple-negative Breast Cancer Metastases. Cancer research communications 4 (3) (2024)
Koichi Ito, Ibuki Harada, Criseyda Martinez, Katsutoshi Sato, Eunjee Lee, Elisa Port, Jessica H Byerly, Anupma Nayak, Ekta Tripathi, Jun Zhu, Hanna Y Irie
MARCH2, a Novel Oncogene-regulated SNAIL E3 Ligase, Suppresses Triple-negative Breast Cancer Metastases. Cancer research communications 4 (3) (2024)
Matthew D Galsky, Siamak Daneshmand, Sudeh Izadmehr, Edgar G Kozlova, Kevin G Chan, Sara Lewis, Bassam El Achkar, Tanya B Dorff, Jeremy Paul Cetnar, Brock O Neil, Anishka D'Souza, Ronac Mamtani, Christos E Kyriakopoulos, Tomi Jun, Anisha Mahalya Gogerly-Moragoda, Rachel Brody, Hui Xie, Kai Nie, Geoffrey Kelly, Amir Horwitz, Yayoi Kinoshita, Ethan Ellis, Yohei Nose, Giorgio Ioannou, Rafael Cabal, G Kenneth Haines, Li Wang, Kent W Mouw, Robert M Samstein, Reza Mehrazin, Nina Bhardwaj, Menggang Yu, Qianqian Zhao, Seunghee Kim-Schulze, Robert P Sebra, Jun Zhu, Sacha Gnjatic, John Sfakianos, Sumanta Kumar Pal
Gemcitabine and cisplatin plus nivolumab as organ-sparing treatment for muscle-invasive bladder cancer: a phase 2 trial. Nature medicine (2023)
Seungyeul Yoo, Abhilasha Sinha, Dawei Yang, Nasser K Altorki, Radhika Tandon, Wenhui Wang, Deebly Chavez, Eunjee Lee, Ayushi S Patel, Takashi Sato, Ranran Kong, Bisen Ding, Eric E Schadt, Hideo Watanabe, Pierre P Massion, Alain C Borczuk, Jun Zhu, Charles A Powell
Integrative network analysis of early-stage lung adenocarcinoma identifies aurora kinase inhibition as interceptor of invasion and progression. Nature communications 13 (1) (2022)
Wenhui Wang, Yan Chen, Liang Wu, Yi Zhang, Seungyeul Yoo, Quan Chen, Shiping Liu, Yong Hou, Xiao-Ping Chen, Qian Chen, Jun Zhu
HBV genome-enriched single cell sequencing revealed heterogeneity in HBV-driven hepatocellular carcinoma (HCC). BMC medical genomics 15 (1) (2022)
Haocheng Yu, Stephanie Tuminello, Naomi Alpert, Maaike van Gerwen, Seungyeul Yoo, David J Mulholland, Stuart A Aaronson, Michael Donovan, William K Oh, Yixuan Gong, Li Wang, Jun Zhu, Emanuela Taioli
Global DNA methylation of WTC prostate cancer tissues show signature differences compared to non-exposed cases. Carcinogenesis 43 (6) (2022)
Abhilasha Sinha, Yong Zou, Ayushi S Patel, Seungyeul Yoo, Feng Jiang, Takashi Sato, Ranran Kong, Hideo Watanabe, Jun Zhu, Pierre P Massion, Alain C Borczuk, Charles A Powell
Early-Stage Lung Adenocarcinoma MDM2 Genomic Amplification Predicts Clinical Outcome and Response to Targeted Therapy. Cancers 14 (3) (2022)
Haocheng Yu, John P Sfakianos, Li Wang, Yang Hu, Jorge Daza, Matthew D Galsky, Harkirat S Sandhu, Olivier Elemento, Bishoy Morris Faltas, Adam M Farkas, Nina Bhardwaj, Jun Zhu, David J Mulholland
Tumor-Infiltrating Myeloid Cells Confer De Novo Resistance to PD-L1 Blockade through EMT-Stromal and Tgfβ-Dependent Mechanisms. Molecular cancer therapeutics 21 (11) (2022)
Maximillian S Westphal, Eunjee Lee, Eric E Schadt, Giselle S Sholler, Jun Zhu
Identification of Let-7 miRNA Activity as a Prognostic Biomarker of SHH Medulloblastoma. Cancers 14 (1) (2021)
Noam D Beckmann, Phillip H Comella, Esther Cheng, Lauren Lepow, Aviva G Beckmann, Scott R Tyler, Konstantinos Mouskas, Nicole W Simons, Gabriel E Hoffman, Nancy J Francoeur, Diane M Del Valle, Gurpawan Kang, Anh Do, Emily Moya, Lillian Wilkins, Jessica Le Berichel, Christie Chang, Robert Marvin, Sharlene Calorossi, Alona Lansky, Laura Walker, Nancy Yi, Alex Yu, Jonathan Chung, Matthew Hartnett, Melody Eaton, Sandra Hatem, Hajra Jamal, Alara Akyatan, Alexandra Tabachnikova, Lora E Liharska, Liam Cotter, Brian Fennessy, Akhil Vaid, Guillermo Barturen, Hardik Shah, Ying-Chih Wang, Shwetha Hara Sridhar, Juan Soto, Swaroop Bose, Kent Madrid, Ethan Ellis, Elyze Merzier, Konstantinos Vlachos, Nataly Fishman, Manying Tin, Melissa Smith, Hui Xie, Manishkumar Patel, Kai Nie, Kimberly Argueta, Jocelyn Harris, Neha Karekar, Craig Batchelor, Jose Lacunza, Mahlet Yishak, Kevin Tuballes, Ieisha Scott, Arvind Kumar, Suraj K Jaladanki, Charuta Agashe, Ryan C Thompson, Evan Clark, Bojan Losic, Lauren Peters, null null, Panagiotis Roussos, Jun Zhu, Wenhui Wang, Andrew Kasarskis, Benjamin Scott Glicksberg, Girish Nadkarni, Dusan Bogunovic, Cordelia Elaiho, Sandeep Gangadharan, George Ofori-Amanfo, Kasey Alesso-Carra, Kenan Onel, Karen M Wilson, Carmen A Argmann, Supinda Bunyavanich, Marta Eugenia Alarcón-Riquelme, Thomas U Marron, Adeeb Rahman, Seunghee Kim-Schulze, Sacha Gnjatic, Bruce D Gelb, Miriam Merad, Robert Sebra, Eric E Schadt, Alexander W Charney
Downregulation of exhausted cytotoxic T cells in gene expression networks of multisystem inflammatory syndrome in children. Nature communications 12 (1) (2021)
Ariella T Cohain, William T Barrington, Daniel M Jordan, Noam D Beckmann, Carmen A Argmann, Sander M Houten, Alexander W Charney, Raili Ermel, Katyayani Sukhavasi, Oscar Franzen, Simon Koplev, Carl Whatling, Gillian M Belbin, Jialiang Yang, Ke Hao, Eimear E Kenny, Zhidong Tu, Jun Zhu, Li-Ming Gan, Ron Do, Chiara Giannarelli, Jason C Kovacic, Arno Ruusalepp, Aldons J Lusis, Johan L M Bjorkegren, Eric E Schadt
An integrative multiomic network model links lipid metabolism to glucose regulation in coronary artery disease. Nature communications 12 (1) (2021)
Wenhui Wang, Li Wang, Junjun She, Jun Zhu
Examining heterogeneity of stromal cells in tumor microenvironment based on pan-cancer single-cell RNA sequencing data. Cancer biology & medicine (2021)
Young Jae Woo, Panos Roussos, Vahram Haroutunian, Pavel Katsel, Samuel Gandy, Eric E Schadt, Jun Zhu, null null
Comparison of brain connectomes by MRI and genomics and its implication in Alzheimer's disease. BMC medicine 18 (1) (2020)
Li Wang, Robert P Sebra, John P Sfakianos, Kimaada Allette, Wenhui Wang, Seungyeul Yoo, Nina Bhardwaj, Eric E Schadt, Xin Yao, Matthew D Galsky, Jun Zhu
A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles. Genome medicine 12 (1) (2020)
Noam D Beckmann, Wei-Jye Lin, Minghui Wang, Ariella T Cohain, Alexander W Charney, Pei Wang, Weiping Ma, Ying-Chih Wang, Cheng Jiang, Mickael Audrain, Phillip H Comella, Amanda K Fakira, Siddharth P Hariharan, Gillian M Belbin, Kiran Girdhar, Allan L Levey, Nicholas T Seyfried, Eric B Dammer, Duc Duong, James J Lah, Jean-Vianney Haure-Mirande, Ben Shackleton, Tomas Fanutza, Robert Blitzer, Eimear Kenny, Jun Zhu, Vahram Haroutunian, Pavel Katsel, Sam Gandy, Zhidong Tu, Michelle E Ehrlich, Bin Zhang, Stephen R J Salton, Eric E Schadt
Multiscale causal networks identify VGF as a key regulator of Alzheimer's disease. Nature communications 11 (1) (2020)
Yu Liu, Haocheng Yu, Seungyeul Yoo, Eunjee Lee, Alessandro Laganà, Samir Parekh, Eric E Schadt, Li Wang, Jun Zhu
A Network Analysis of Multiple Myeloma Related Gene Signatures. Cancers 11 (10) (2019)
Juliane Hitzel, Eunjee Lee, Yi Zhang, Sofia Iris Bibli, Xiaogang Li, Sven Zukunft, Beatrice Pflüger, Jiong Hu, Christoph Schürmann, Andrea Estefania Vasconez, James A Oo, Adelheid Kratzer, Hanjoong Jo, Flávia Rezende, Ivana Josipovic, Dominique Thomas, Hector Giral, Yannick Schreiber, Gerd Geisslinger, Christian Fork, Xia Yang, Fragiska Sigala, Casey E Romanoski, Jens Kroll, Hanjoong Jo, Ulf Landmesser, Aldons J Lusis, Dmitry Namgaladze, Ingrid Fleming, Matthias S Leisegang, Jun Zhu, Ralf P Brandes
Oxidized phospholipids regulate amino acid metabolism through MTHFD2 to facilitate nucleotide release in endothelial cells. Nature communications 9 (1) (2018)
Daniela Michlmayr, Theodore R Pak, Adeeb H Rahman, El-Ad David Amir, Eun-Young Kim, Seunghee Kim-Schulze, Maria Suprun, Michael G Stewart, Guajira P Thomas, Angel Balmaseda, Li Wang, Jun Zhu, Mayte Suaréz-Fariñas, Steven M Wolinsky, Andrew Kasarskis, Eva Harris
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases. Molecular systems biology 14 (8) (2018)
Luan Lin, Quan Chen, Jeanne P Hirsch, Seungyeul Yoo, Ka Yee Yeung, Roger E Bumgarner, Zhidong Tu, Eric E Schadt, Jun Zhu
Temporal genetic association and temporal genetic causality methods for dissecting complex networks. Nature communications 9 (1) (2018)
Eunjee Lee, Ana Collazo-Lorduy, Mireia Castillo-Martin, Yixuan Gong, Li Wang, William K Oh, Matthew D Galsky, Carlos Cordon-Cardo, Jun Zhu
Identification of microR-106b as a prognostic biomarker of p53-like bladder cancers by ActMiR. Oncogene 37 (44) (2018)
Li Wang, Abdel Saci, Peter M Szabo, Scott D Chasalow, Mireia Castillo-Martin, Josep Domingo-Domenech, Arlene Siefker-Radtke, Padmanee Sharma, John P Sfakianos, Yixuan Gong, Ana Dominguez-Andres, William K Oh, David Mulholland, Alex Azrilevich, Liangyuan Hu, Carlos Cordon-Cardo, Hélène Salmon, Nina Bhardwaj, Jun Zhu, Matthew D Galsky
EMT- and stroma-related gene expression and resistance to PD-1 blockade in urothelial cancer. Nature communications 9 (1) (2018)
Seungyeul Yoo, Wenhui Wang, Qin Wang, M Isabel Fiel, Eunjee Lee, Spiros P Hiotis, Jun Zhu
A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC medicine 15 (1) (2017)
Davide Degli Esposti, Vasily N Aushev, Eunjee Lee, Marie-Pierre Cros, Jun Zhu, Zdenko Herceg, Jia Chen, Hector Hernandez-Vargas
miR-500a-5p regulates oxidative stress response genes in breast cancer and predicts cancer survival. Scientific reports 7 (1) (2017)
Lauren A Peters, Jacqueline Perrigoue, Arthur Mortha, Alina Iuga, Won-Min Song, Eric M Neiman, Sean R Llewellyn, Antonio Di Narzo, Brian A Kidd, Shannon E Telesco, Yongzhong Zhao, Aleksandar Stojmirovic, Jocelyn Sendecki, Khader Shameer, Riccardo Miotto, Bojan Losic, Hardik Shah, Eunjee Lee, Minghui Wang, Jeremiah J Faith, Andrew Kasarskis, Carrie Brodmerkel, Mark Curran, Anuk Das, Joshua R Friedman, Yoshinori Fukui, Mary Beth Humphrey, Brian M Iritani, Nicholas E S Sibinga, Teresa K Tarrant, Carmen Argmann, Ke Hao, Panos Roussos, Jun Zhu, Bin Zhang, Radu Dobrin, Lloyd F Mayer, Eric E Schadt
A functional genomics predictive network model identifies regulators of inflammatory bowel disease. Nature genetics 49 (10) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jun Zhu