Kevin M Weeks (Kevin Weeks)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 37

Top Topics

Molecular Dynamics Simulations

Quality Control

Top Venues

Nucleic acids research

Proceedings of the National Academy of Sciences of the United States of America

Accounts of chemical research

This page only lists publications with an associated author ORCID identifier.

Publications

Daniel B Haack, Boris Rudolfs, Shouhong Jin, Kevin M Weeks, Navtej Toor
Scaffold-enabled high-resolution cryo-EM structure determination of RNA. bioRxiv : the preprint server for biology (2024)
John S Schneekloth, Mo Yang, Peri Prestwood, Luiz Passalacqua, Sumirtha Balaratnam, Christopher Fullenkamp, Winston Arney, Kevin M Weeks, Adrian Ferre-D'Amare
Structure-Informed Design of an Ultra Bright RNA-activated Fluorophore. Research square (2024)
Patrick S Irving, Kevin M Weeks
RNAvigate: efficient exploration of RNA chemical probing datasets. Nucleic acids research (2024)
Patrick S Irving, Kevin M Weeks
RNAvigate: efficient exploration of RNA chemical probing datasets. Nucleic acids research (2024)
Daniel B Haack, Boris Rudolfs, Shouhong Jin, Kevin M Weeks, Navtej Toor
Scaffold-enabled high-resolution cryo-EM structure determination of RNA. bioRxiv : the preprint server for biology (2024)
Patrick S Irving, Kevin M Weeks
RNAvigate: efficient exploration of RNA chemical probing datasets. Nucleic acids research 52 (5) (2024)
Patrick S Irving, Kevin M Weeks
RNAvigate: efficient exploration of RNA chemical probing datasets. Nucleic acids research 52 (5) (2024)
Patrick S Irving, Kevin M Weeks
RNAvigate: efficient exploration of RNA chemical probing datasets. Nucleic acids research 52 (5) (2024)
John S Schneekloth, Mo Yang, Peri Prestwood, Luiz Passalacqua, Sumirtha Balaratnam, Christopher Fullenkamp, Winston Arney, Kevin M Weeks, Adrian Ferre-D'Amare
Structure-Informed Design of an Ultra Bright RNA-activated Fluorophore. Research square (2024)
Anthony M Mustoe, Chase A Weidmann, Kevin M Weeks
Correction to "Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis". Accounts of chemical research (2023)
Mark A Boerneke, Nandan S Gokhale, Stacy M Horner, Kevin M Weeks
Structure-first identification of RNA elements that regulate dengue virus genome architecture and replication. Proceedings of the National Academy of Sciences of the United States of America 120 (15) (2023)
Yezi Xiang, Wenze Huang, Lian-Mei Tan, Tianyuan Chen, Yang He, Patrick S Irving, Kevin M Weeks, Qiangfeng Cliff Zhang, Xinnian Dong
Pervasive downstream RNA hairpins dynamically dictate start-codon selection. Nature (2023)
Anthony M Mustoe, Chase A Weidmann, Kevin M Weeks
Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis. Accounts of chemical research (2023)
Christine A Roden, Yifan Dai, Catherine A Giannetti, Ian Seim, Myungwoon Lee, Rachel Sealfon, Grace A McLaughlin, Mark A Boerneke, Christiane Iserman, Samuel A Wey, Joanne L Ekena, Olga G Troyanskaya, Kevin M Weeks, Lingchong You, Ashutosh Chilkoti, Amy S Gladfelter
Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures. Nucleic acids research 50 (14) (2022)
Meredith J Zeller, Oleg Favorov, Kelin Li, Ashok Nuthanakanti, Dina Hussein, Auréliane Michaud, Daniel A Lafontaine, Steven Busan, Alexander Serganov, Jeffrey Aubé, Kevin M Weeks
SHAPE-enabled fragment-based ligand discovery for RNA. Proceedings of the National Academy of Sciences of the United States of America 119 (20) (2022)
Meredith J Zeller, Ashok Nuthanakanti, Kelin Li, Jeffrey Aubé, Alexander Serganov, Kevin M Weeks
Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery. ACS chemical biology 17 (2) (2022)
Philip J Grayeski, Chase A Weidmann, Jayashree Kumar, Lela Lackey, Anthony M Mustoe, Steven Busan, Alain Laederach, Kevin M Weeks
Global 5'-UTR RNA structure regulates translation of a SERPINA1 mRNA. Nucleic acids research 50 (17) (2022)
J Winston Arney, Kevin M Weeks
RNA-Ligand Interactions Quantified by Surface Plasmon Resonance with Reference Subtraction. Biochemistry 61 (15) (2022)
Kevin M Weeks
SHAPE Directed Discovery of New Functions in Large RNAs. Accounts of chemical research 54 (10) (2021)
Thomas W Christy, Catherine A Giannetti, Gillian Houlihan, Matthew J Smola, Greggory M Rice, Jian Wang, Nikolay V Dokholyan, Alain Laederach, Philipp Holliger, Kevin M Weeks
Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP. Biochemistry 60 (25) (2021)
Thomas W Christy, Catherine A Giannetti, Alain Laederach, Kevin M Weeks
Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper. PLoS computational biology 17 (12) (2021)
Chase A Weidmann, Anthony M Mustoe, Parth B Jariwala, J Mauro Calabrese, Kevin M Weeks
Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA. Nature biotechnology 39 (3) (2020)
Jeffrey E Ehrhardt, Kevin M Weeks
Time-Resolved, Single-Molecule, Correlated Chemical Probing of RNA. Journal of the American Chemical Society 142 (44) (2020)
Anthony M Mustoe, Nicole N Lama, Patrick S Irving, Samuel W Olson, Kevin M Weeks
RNA base-pairing complexity in living cells visualized by correlated chemical probing. Proceedings of the National Academy of Sciences of the United States of America 116 (49) (2019)
Arnab Sengupta, Greggory M Rice, Kevin M Weeks
Single-molecule correlated chemical probing reveals large-scale structural communication in the ribosome and the mechanism of the antibiotic spectinomycin in living cells. PLoS biology 17 (9) (2019)
Catherine A Giannetti, Steven Busan, Chase A Weidmann, Kevin M Weeks
SHAPE Probing Reveals Human rRNAs Are Largely Unfolded in Solution. Biochemistry 58 (31) (2019)
Steven Busan, Chase A Weidmann, Arnab Sengupta, Kevin M Weeks
Guidelines for SHAPE Reagent Choice and Detection Strategy for RNA Structure Probing Studies. Biochemistry 58 (23) (2019)
Elizabeth A Dethoff, Kevin M Weeks
Effects of Refolding on Large-Scale RNA Structure. Biochemistry 58 (28) (2019)
Erin M Langdon, Yupeng Qiu, Amirhossein Ghanbari Niaki, Grace A McLaughlin, Chase A Weidmann, Therese M Gerbich, Jean A Smith, John M Crutchley, Christina Marie Termini, Kevin M Weeks, Sua Myong, Amy S Gladfelter
mRNA structure determines specificity of a polyQ-driven phase separation. Science (New York, N.Y.) 360 (6391) (2018)
Anthony M Mustoe, Meredith Corley, Alain Laederach, Kevin M Weeks
Messenger RNA Structure Regulates Translation Initiation: A Mechanism Exploited from Bacteria to Humans. Biochemistry 57 (26) (2018)
Matthew J Smola, Kevin M Weeks
In-cell RNA structure probing with SHAPE-MaP. Nature protocols 13 (6) (2018)
Jessime M Kirk, Susan O Kim, Kaoru Inoue, Matthew J Smola, David M Lee, Megan D Schertzer, Joshua S Wooten, Allison R Baker, Daniel Sprague, David W Collins, Christopher R Horning, Shuo Wang, Qidi Chen, Kevin M Weeks, Peter J Mucha, J Mauro Calabrese
Functional classification of long non-coding RNAs by k-mer content. Nature genetics 50 (10) (2018)
Elizabeth A Dethoff, Mark A Boerneke, Nandan S Gokhale, Brejnev M Muhire, Darren P Martin, Matthew T Sacco, Michael J McFadden, Jules B Weinstein, William B Messer, Stacy M Horner, Kevin M Weeks
Pervasive tertiary structure in the dengue virus RNA genome. Proceedings of the National Academy of Sciences of the United States of America 115 (45) (2018)
Mark A Boerneke, Kevin M Weeks
High-Throughput Explorations of RNA Structural Modularity. Biochemistry 57 (43) (2018)
Steven Busan, Kevin M Weeks
Visualization of RNA structure models within the Integrative Genomics Viewer. RNA (New York, N.Y.) 23 (7) (2017)
Bridget C Larman, Elizabeth A Dethoff, Kevin M Weeks
Packaged and Free Satellite Tobacco Mosaic Virus (STMV) RNA Genomes Adopt Distinct Conformational States. Biochemistry 56 (16) (2017)
Steven Busan, Kevin M Weeks
Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2. RNA (New York, N.Y.) 24 (2) (2017)