Qiangfeng Cliff Zhang (Qiangfeng C Zhang, Qiangfeng Zhang)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 32

Top Topics

Network Analysis

Transcription Factor

Top Venues

Nature genetics

The EMBO journal

Nature structural & molecular biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Wenze Huang, Tuanlin Xiong, Yuting Zhao, Jian Heng, Ge Han, Pengfei Wang, Zhihua Zhao, Ming Shi, Juan Li, Jiazhen Wang, Yixia Wu, Feng Liu, Jianzhong Jeff Xi, Yangming Wang, Qiangfeng Cliff Zhang
Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human. Nature genetics 56 (1) (2024)
Wenze Huang, Tuanlin Xiong, Yuting Zhao, Jian Heng, Ge Han, Pengfei Wang, Zhihua Zhao, Ming Shi, Juan Li, Jiazhen Wang, Yixia Wu, Feng Liu, Jianzhong Jeff Xi, Yangming Wang, Qiangfeng Cliff Zhang
Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human. Nature genetics 56 (1) (2024)
Wenze Huang, Tuanlin Xiong, Yuting Zhao, Jian Heng, Ge Han, Pengfei Wang, Zhihua Zhao, Ming Shi, Juan Li, Jiazhen Wang, Yixia Wu, Feng Liu, Jianzhong Jeff Xi, Yangming Wang, Qiangfeng Cliff Zhang
Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human. Nature genetics (2024)
Wenze Huang, Tuanlin Xiong, Yuting Zhao, Jian Heng, Ge Han, Pengfei Wang, Zhihua Zhao, Ming Shi, Juan Li, Jiazhen Wang, Yixia Wu, Feng Liu, Jianzhong Jeff Xi, Yangming Wang, Qiangfeng Cliff Zhang
Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human. Nature genetics 56 (1) (2024)
Xiaofeng Zhang, Xiechao Zhan, Tong Bian, Fenghua Yang, Pan Li, Yichen Lu, Zhihan Xing, Rongyan Fan, Qiangfeng Cliff Zhang, Yigong Shi
Structural insights into branch site proofreading by human spliceosome. Nature structural & molecular biology (2024)
Xiaofeng Zhang, Xiechao Zhan, Tong Bian, Fenghua Yang, Pan Li, Yichen Lu, Zhihan Xing, Rongyan Fan, Qiangfeng Cliff Zhang, Yigong Shi
Structural insights into branch site proofreading by human spliceosome. Nature structural & molecular biology (2024)
Xiaofeng Zhang, Xiechao Zhan, Tong Bian, Fenghua Yang, Pan Li, Yichen Lu, Zhihan Xing, Rongyan Fan, Qiangfeng Cliff Zhang, Yigong Shi
Structural insights into branch site proofreading by human spliceosome. Nature structural & molecular biology 31 (5) (2024)
Xiaofeng Zhang, Xiechao Zhan, Tong Bian, Fenghua Yang, Pan Li, Yichen Lu, Zhihan Xing, Rongyan Fan, Qiangfeng Cliff Zhang, Yigong Shi
Structural insights into branch site proofreading by human spliceosome. Nature structural & molecular biology 31 (5) (2024)
Wenze Huang, Tuanlin Xiong, Yuting Zhao, Jian Heng, Ge Han, Pengfei Wang, Zhihua Zhao, Ming Shi, Juan Li, Jiazhen Wang, Yixia Wu, Feng Liu, Jianzhong Jeff Xi, Yangming Wang, Qiangfeng Cliff Zhang
Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human. Nature genetics 56 (1) (2024)
Wenze Huang, Tuanlin Xiong, Yuting Zhao, Jian Heng, Ge Han, Pengfei Wang, Zhihua Zhao, Ming Shi, Juan Li, Jiazhen Wang, Yixia Wu, Feng Liu, Jianzhong Jeff Xi, Yangming Wang, Qiangfeng Cliff Zhang
Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human. Nature genetics 56 (1) (2024)
Yezi Xiang, Wenze Huang, Lian-Mei Tan, Tianyuan Chen, Yang He, Patrick S Irving, Kevin M Weeks, Qiangfeng Cliff Zhang, Xinnian Dong
Pervasive downstream RNA hairpins dynamically dictate start-codon selection. Nature (2023)
Jinsong Zhang, Yuhan Fei, Lei Sun, Qiangfeng Cliff Zhang
Advances and opportunities in RNA structure experimental determination and computational modeling. Nature methods 19 (10) (2022)
Bin Zhang, Yuan Zhang, Lei Xiong, Yuzhe Li, Yunliang Zhang, Jiu-Liang Zhao, Hui Jiang, Can Li, Yunqi Liu, Xin-Dong Liu, Haofei Liu, Yi-Fang Ping, Qiangfeng Cliff Zhang, Zheng Zhang, Xiu-Wu Bian, Yan Zhao, Xiaoyu Hu
CD127 imprints functional heterogeneity to diversify monocyte responses in inflammatory diseases. The Journal of experimental medicine 219 (2) (2022)
Hongyao Sun, Yutong Chen, Kun Yan, Yanqiu Shao, Qiangfeng Cliff Zhang, Yi Lin, Qiaoran Xi
Recruitment of TRIM33 to cell-context specific PML nuclear bodies regulates nodal signaling in mESCs. The EMBO journal 42 (3) (2022)
Hongyao Sun, Yutong Chen, Kun Yan, Yanqiu Shao, Qiangfeng Cliff Zhang, Yi Lin, Qiaoran Xi
Recruitment of TRIM33 to cell-context specific PML nuclear bodies regulates nodal signaling in mESCs. The EMBO journal (2022)
Hongyao Sun, Yutong Chen, Kun Yan, Yanqiu Shao, Qiangfeng Cliff Zhang, Yi Lin, Qiaoran Xi
Recruitment of TRIM33 to cell-context specific PML nuclear bodies regulates nodal signaling in mESCs. The EMBO journal 42 (3) (2022)
Lei Xiong, Kang Tian, Yuzhe Li, Weixi Ning, Xin Gao, Qiangfeng Cliff Zhang
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space. Nature communications 13 (1) (2022)
Ye Sun, Kun Yan, Yi Wang, Cheng Xu, Dan Wang, Wei Zhou, Shuning Guo, Yujie Han, Lei Tang, Yanqiu Shao, Shaobo Shan, Qiangfeng Cliff Zhang, Yujie Tang, Deling Li, Qiaoran Xi
Context-dependent tumor-suppressive BMP signaling in diffuse intrinsic pontine glioma regulates stemness through epigenetic regulation of CXXC5. Nature cancer 3 (9) (2022)
Hongyao Sun, Yutong Chen, Kun Yan, Yanqiu Shao, Qiangfeng Cliff Zhang, Yi Lin, Qiaoran Xi
Recruitment of TRIM33 to cell-context specific PML nuclear bodies regulates nodal signaling in mESCs. The EMBO journal 42 (3) (2022)
Hongyao Sun, Yutong Chen, Kun Yan, Yanqiu Shao, Qiangfeng Cliff Zhang, Yi Lin, Qiaoran Xi
Recruitment of TRIM33 to cell-context specific PML nuclear bodies regulates nodal signaling in mESCs. The EMBO journal 42 (3) (2022)
Bo Yu, Pan Li, Qiangfeng Cliff Zhang, Lin Hou
Differential analysis of RNA structure probing experiments at nucleotide resolution: uncovering regulatory functions of RNA structure. Nature communications 13 (1) (2022)
Wenqi Hu, Haitao Zeng, Yanan Shi, Chuanchuan Zhou, Jiana Huang, Lei Jia, Siqi Xu, Xiaoyu Feng, Yanyan Zeng, Tuanlin Xiong, Wenze Huang, Peng Sun, Yajie Chang, Tingting Li, Cong Fang, Keliang Wu, Lingbo Cai, Wuhua Ni, Yan Li, Zhiyong Yang, Qiangfeng Cliff Zhang, RiCheng Chian, Zi-Jiang Chen, Xiaoyan Liang, Kehkooi Kee
Single-cell transcriptome and translatome dual-omics reveals potential mechanisms of human oocyte maturation. Nature communications 13 (1) (2022)
Qing-Jun Luo, Jinsong Zhang, Pan Li, Qing Wang, Yue Zhang, Biswajoy Roy-Chaudhuri, Jianpeng Xu, Mark A Kay, Qiangfeng Cliff Zhang
RNA structure probing reveals the structural basis of Dicer binding and cleavage. Nature communications 12 (1) (2021)
Shaojun Zhang, Wenze Huang, Lili Ren, Xiaohui Ju, Mingli Gong, Jian Rao, Lei Sun, Pan Li, Qiang Ding, Jianwei Wang, Qiangfeng Cliff Zhang
Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2. Cell research (2021)
Xi-Wen Wang, Chu-Xiao Liu, Ling-Ling Chen, Qiangfeng Cliff Zhang
RNA structure probing uncovers RNA structure-dependent biological functions. Nature chemical biology 17 (7) (2021)
Rui Bai, Ruixue Wan, Lin Wang, Kui Xu, Qiangfeng Cliff Zhang, Jianlin Lei, Yigong Shi
Structure of the activated human minor spliceosome. Science (New York, N.Y.) 371 (6535) (2021)
Xiaohui Ju, Yunkai Zhu, Yuyan Wang, Jingrui Li, Jiaxing Zhang, Mingli Gong, Wenlin Ren, Sai Li, Jin Zhong, Linqi Zhang, Qiangfeng Cliff Zhang, Rong Zhang, Qiang Ding
A novel cell culture system modeling the SARS-CoV-2 life cycle. PLoS pathogens 17 (3) (2021)
Xiaohui Ju, Guangtao Xiang, Mingli Gong, Rui Yang, Jierui Qin, Yafei Li, Yuchen Nan, Yonglin Yang, Qiangfeng Cliff Zhang, Qiang Ding
Identification of functional cis-acting RNA elements in the hepatitis E virus genome required for viral replication. PLoS pathogens 16 (5) (2020)
Xiaocheng Weng, Jing Gong, Yi Chen, Tong Wu, Fang Wang, Shixi Yang, Yushu Yuan, Guan-Zheng Luo, Kai Chen, Lulu Hu, Honghui Ma, Pingluan Wang, Qiangfeng Cliff Zhang, Xiang Zhou, Chuan He
Keth-seq for transcriptome-wide RNA structure mapping. Nature chemical biology 16 (5) (2020)
Yafei Yin, J Yuyang Lu, Xuechun Zhang, Wen Shao, Yanhui Xu, Pan Li, Yantao Hong, Li Cui, Ge Shan, Bin Tian, Qiangfeng Cliff Zhang, Xiaohua Shen
U1 snRNP regulates chromatin retention of noncoding RNAs. Nature 580 (7801) (2020)
Lei Sun, Furqan M Fazal, Pan Li, James P Broughton, Byron Lee, Lei Tang, Wenze Huang, Eric T Kool, Howard Y Chang, Qiangfeng Cliff Zhang
RNA structure maps across mammalian cellular compartments. Nature structural & molecular biology 26 (4) (2019)
Lei Xiong, Kui Xu, Kang Tian, Yanqiu Shao, Lei Tang, Ge Gao, Michael Zhang, Tao Jiang, Qiangfeng Cliff Zhang
SCALE method for single-cell ATAC-seq analysis via latent feature extraction. Nature communications 10 (1) (2019)