Li-Jun Ma

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 29

Top Venues

Molecular plant-microbe interactions : MPMI

bioRxiv : the preprint server for biology

Journal of fungi (Basel, Switzerland)

Phytopathology

University of Massachusetts Amherst

State University of New York College of Environmental Sciences and Forestry (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Massachusetts Amherst

United States

Assistant Professor :: Biochemistry and Molecular Biology

Broad Institute

United States

Research Scientist :: Genome Biology

Harvard University

United States

Postdoctoral scientist :: Molecular and Cellular Biology

Education History

State University of New York College of Environmental Sciences and Forestry

United States

PHD :: Plant Biology

Publications

Yong Zhang, Siwen Liu, Diane Mostert, Houlin Yu, Mengxia Zhuo, Gengtan Li, Cunwu Zuo, Sajeet Haridas, Katie Webster, Minhui Li, Igor V Grigoriev, Ganjun Yi, Altus Viljoen, Chunyu Li, Li-Jun Ma
Virulence of banana wilt-causing fungal pathogen Fusarium oxysporum tropical race 4 is mediated by nitric oxide biosynthesis and accessory genes. Nature microbiology (2024)
Yong Zhang, Siwen Liu, Diane Mostert, Houlin Yu, Mengxia Zhuo, Gengtan Li, Cunwu Zuo, Sajeet Haridas, Katie Webster, Minhui Li, Igor V Grigoriev, Ganjun Yi, Altus Viljoen, Chunyu Li, Li-Jun Ma
Virulence of banana wilt-causing fungal pathogen Fusarium oxysporum tropical race 4 is mediated by nitric oxide biosynthesis and accessory genes. Nature microbiology (2024)
Dilay Hazal Ayhan, Serena Abbondante, Domingo Martínez-Soto, Shira Milo, Katherine Rickelton, Vista Sohrab, Shunsuke Kotera, Tsutomu Arie, Michaela Ellen Marshall, Marina Campos Rocha, Sajeet Haridas, Igor V Grigoriev, Neta Shlezinger, Eric Pearlman, Li-Jun Ma
The differential virulence of Fusarium strains causing corneal infections and plant diseases is associated with accessory chromosome composition. bioRxiv : the preprint server for biology (2024)
Dilay Hazal Ayhan, Serena Abbondante, Domingo Martínez-Soto, Shira Milo, Katherine Rickelton, Vista Sohrab, Shunsuke Kotera, Tsutomu Arie, Michaela Ellen Marshall, Marina Campos Rocha, Sajeet Haridas, Igor V Grigoriev, Neta Shlezinger, Eric Pearlman, Li-Jun Ma
The differential virulence of Fusarium strains causing corneal infections and plant diseases is associated with accessory chromosome composition. bioRxiv : the preprint server for biology (2024)
Dilay Hazal Ayhan, Serena Abbondante, Domingo Martínez-Soto, Shira Milo, Katherine Rickelton, Vista Sohrab, Shunsuke Kotera, Tsutomu Arie, Michaela Ellen Marshall, Marina Campos Rocha, Sajeet Haridas, Igor V Grigoriev, Neta Shlezinger, Eric Pearlman, Li-Jun Ma
The differential virulence of Fusarium strains causing corneal infections and plant diseases is associated with accessory chromosome composition. bioRxiv : the preprint server for biology (2024)
Houlin Yu, He Yang, Sajeet Haridas, Richard D Hayes, Hunter Lynch, Sawyer Andersen, Madison Newman, Gengtan Li, Domingo Martínez-Soto, Shira Milo-Cochavi, Dilay Hazal Ayhan, Yong Zhang, Igor V Grigoriev, Li-Jun Ma
Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex. Journal of fungi (Basel, Switzerland) 9 (3) (2023)
Gengtan Li, Mai McWilliams, Matheus Rodrigues, Benjamin Mearkle, Nader Jaafar, Vivek Golla, Houlin Yu, He Yang, Dilay Hazal Ayhan, Kelly Allen, Domingo Martínez-Soto, Amy Springer, Li-Jun Ma
CUR(E)ating a new approach to study fungal effectors and enhance undergraduate education through authentic research. Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology (2023)
Li-Jun Ma, Yong Zhang, Chunyu Li, Siwen Liu, Cunwu Liu, Diane Mostert, Houlin Yu, Sajeet Haridas, Katie Webster, Minhui Li, Igor V Grigoriev, Altus Viljoen, Ganjun Yi
Accessory genes in tropical race 4 contributed to the recent resurgence of the devastating disease of Fusarium wilt of banana. Research square (2023)
Houlin Yu, He Yang, Sajeet Haridas, Richard D Hayes, Hunter Lynch, Sawyer Andersen, Madison Newman, Gengtan Li, Domingo Martínez-Soto, Shira Milo-Cochavi, Dilay Hazal Ayhan, Yong Zhang, Igor V Grigoriev, Li-Jun Ma
Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex. Journal of fungi (Basel, Switzerland) 9 (3) (2023)
Houlin Yu, He Yang, Sajeet Haridas, Richard D Hayes, Hunter Lynch, Sawyer Andersen, Madison Newman, Gengtan Li, Domingo Martínez-Soto, Shira Milo-Cochavi, Dilay Hazal Ayhan, Yong Zhang, Igor V Grigoriev, Li-Jun Ma
Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex. Journal of fungi (Basel, Switzerland) 9 (3) (2023)
Gengtan Li, Mai McWilliams, Matheus Rodrigues, Benjamin Mearkle, Nader Jaafar, Vivek Golla, Houlin Yu, He Yang, Dilay Hazal Ayhan, Kelly Allen, Domingo Martínez-Soto, Amy Springer, Li-Jun Ma
CUR(E)ating a New Approach to Study Fungal Effectors and Enhance Undergraduate Education through Authentic Research. bioRxiv : the preprint server for biology (2023)
Gengtan Li, Mai McWilliams, Matheus Rodrigues, Benjamin Mearkle, Nader Jaafar, Vivek Golla, Houlin Yu, He Yang, Dilay Hazal Ayhan, Kelly Allen, Domingo Martínez-Soto, Amy Springer, Li-Jun Ma
CUR(E)ating a New Approach to Study Fungal Effectors and Enhance Undergraduate Education through Authentic Research. bioRxiv : the preprint server for biology (2023)
Mladen Petreš, Jovana Hrustić, Nataša Vučinić, Li-Jun Ma, Dilay Hazal Ayhan, Mila Grahovac
Genome Sequence Resource of Fusarium graminearum TaB10 and Fusarium avenaceum KA13, Causal Agents of Stored Apple Rot. Molecular plant-microbe interactions : MPMI 36 (1) (2022)
Mladen Petreš, Jovana Hrustić, Nataša Vučinić, Li-Jun Ma, Dilay Hazal Ayhan, Mila Grahovac
Genome Sequence Resource of Fusarium graminearum TaB10 and Fusarium avenaceum KA13, Causal Agents of Stored Apple Rot. Molecular plant-microbe interactions : MPMI (2022)
Mladen Petreš, Jovana Hrustić, Nataša Vučinić, Li-Jun Ma, Dilay Hazal Ayhan, Mila Grahovac
Genome Sequence Resource of Fusarium graminearum TaB10 and Fusarium avenaceum KA13, Causal Agents of Stored Apple Rot. Molecular plant-microbe interactions : MPMI 36 (1) (2022)
Mladen Petreš, Jovana Hrustić, Nataša Vučinić, Li-Jun Ma, Dilay Hazal Ayhan, Mila Grahovac
Genome Sequence Resource of Fusarium graminearum TaB10 and Fusarium avenaceum KA13, Causal Agents of Stored Apple Rot. Molecular plant-microbe interactions : MPMI 36 (1) (2022)
Mladen Petreš, Jovana Hrustić, Nataša Vučinić, Li-Jun Ma, Dilay Hazal Ayhan, Mila Grahovac
Genome Sequence Resource of Fusarium graminearum TaB10 and Fusarium avenaceum KA13, Causal Agents of Stored Apple Rot. Molecular plant-microbe interactions : MPMI 36 (1) (2022)
Li Guo, Houlin Yu, Bo Wang, Kathryn Vescio, Gregory A DeIulio, He Yang, Andrew Berg, Lili Zhang, Véronique Edel-Hermann, Christian Steinberg, Harold Corby Kistler, Li-Jun Ma
Metatranscriptomic Comparison of Endophytic and Pathogenic Fusarium-Arabidopsis Interactions Reveals Plant Transcriptional Plasticity. Molecular plant-microbe interactions : MPMI 34 (9) (2021)
Vista Sohrab, Cristina López-Díaz, Antonio Di Pietro, Li-Jun Ma, Dilay Hazal Ayhan
TEfinder: A Bioinformatics Pipeline for Detecting New Transposable Element Insertion Events in Next-Generation Sequencing Data. Genes 12 (2) (2021)
David M Geiser, Abdullah M S Al-Hatmi, Takayuki Aoki, Tsutomu Arie, Virgilio Balmas, Irene Barnes, Gary C Bergstrom, Madan K Bhattacharyya, Cheryl L Blomquist, Robert L Bowden, Balázs Brankovics, Daren W Brown, Lester W Burgess, Kathryn Bushley, Mark Busman, José Francisco Cano-Lira, Joseph D Carrillo, Hao-Xun Chang, Chi-Yu Chen, Wanquan Chen, Martin Chilvers, Sofia Chulze, Jeffrey J Coleman, Christina A Cuomo, Z Wilhelm de Beer, G Sybren de Hoog, Johanna Del Castillo-Múnera, Emerson Medeiros Del Ponte, Javier Diéguez-Uribeondo, Antonio Di Pietro, Véronique Edel-Hermann, Wade H Elmer, Lynn Epstein, Akif Eskalen, Maria Carmela Esposto, Kathryne L Everts, Sylvia P Fernández-Pavía, Gilvan Ferreira da Silva, Nora A Foroud, Gerda Fourie, Rasmus J N Frandsen, Stanley Freeman, Michael Freitag, Omer Frenkel, Kevin K Fuller, Tatiana Gagkaeva, Donald M Gardiner, Anthony E Glenn, Scott E Gold, Thomas R Gordon, Nancy F Gregory, Marieka Gryzenhout, Josep Guarro, Beth K Gugino, Santiago Gutierrez, Kim E Hammond-Kosack, Linda J Harris, Mónika Homa, Cheng-Fang Hong, László Hornok, Jenn-Wen Huang, Macit Ilkit, Adriaana Jacobs, Karin Jacobs, Cong Jiang, María Del Mar Jiménez-Gasco, Seogchan Kang, Matthew T Kasson, Kemal Kazan, John C Kennell, Hye-Seon Kim, H Corby Kistler, Gretchen A Kuldau, Tomasz Kulik, Oliver Kurzai, Imane Laraba, Matthew H Laurence, Theresa Lee, Yin-Won Lee, Yong-Hwan Lee, John F Leslie, Edward C Y Liew, Lily W Lofton, Antonio F Logrieco, Manuel S López-Berges, Alicia G Luque, Erik Lysøe, Li-Jun Ma, Robert E Marra, Frank N Martin, Sara R May, Susan P McCormick, Chyanna McGee, Jacques F Meis, Quirico Migheli, Nik M I Mohamed Nor, Michel Monod, Antonio Moretti, Diane Mostert, Giuseppina Mulè, Françoise Munaut, Gary P Munkvold, Paul Nicholson, Marcio Nucci, Kerry O'Donnell, Matias Pasquali, Ludwig H Pfenning, Anna Prigitano, Robert H Proctor, Stéphane Ranque, Stephen A Rehner, Martijn Rep, Gerardo Rodríguez-Alvarado, Lindy Joy Rose, Mitchell G Roth, Carmen Ruiz-Roldán, Amgad A Saleh, Baharuddin Salleh, Hyunkyu Sang, María Mercedes Scandiani, Jonathan Scauflaire, David G Schmale, Dylan P G Short, Adnan Šišić, Jason A Smith, Christopher W Smyth, Hokyoung Son, Ellie Spahr, Jason E Stajich, Emma T Steenkamp, Christian Steinberg, Rajagopal Subramaniam, Haruhisa Suga, Brett A Summerell, Antonella Susca, Cassandra L Swett, Christopher Toomajian, Terry J Torres-Cruz, Anna Maria Tortorano, Martin Urban, Lisa J Vaillancourt, Gary E Vallad, Theo A J van der Lee, Dan Vanderpool, Anne D van Diepeningen, Martha M Vaughan, Eduard Venter, Marcele Vermeulen, Paul E Verweij, Altus Viljoen, Cees Waalwijk, Emma C Wallace, Grit Walther, Jie Wang, Todd J Ward, Brian L Wickes, Nathan P Wiederhold, Michael J Wingfield, Ana K M Wood, Jin-Rong Xu, Xiao-Bing Yang, Tapani Yli-Mattila, Sung-Hwan Yun, Latiffah Zakaria, Hao Zhang, Ning Zhang, Sean X Zhang, Xue Zhang
Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex. Phytopathology 111 (7) (2021)
Yong Zhang, He Yang, David Turrà, Shiguo Zhou, Dilay Hazal Ayhan, Gregory A DeIulio, Li Guo, Karen Broz, Nathan P Wiederhold, Jeffrey J Coleman, Kerry O' Donnell, Ilan Youngster, Alexander J McAdam, Sergey Savinov, Terrance Shea, Sarah Young, Qiandong Zeng, Martijn Rep, Eric Pearlman, David C Schwartz, Antonio Di Pietro, Harold Corby Kistler, Li-Jun Ma
The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes. Communications biology 3 (1) (2020)
Siwen Liu, Jian Li, Yong Zhang, Na Liu, Altus Viljoen, Diane Mostert, Cunwu Zuo, Chunhua Hu, Fangcheng Bi, Huijun Gao, Ou Sheng, Guiming Deng, Qiaosong Yang, Tao Dong, Tongxin Dou, Ganjun Yi, Li-Jun Ma, Chunyu Li
Erratum. The New phytologist 228 (6) (2020)
Houlin Yu, Dilay Hazal Ayhan, Andrew C Diener, Li-Jun Ma
Genome Sequence of Fusarium oxysporum f. sp. matthiolae, a Brassicaceae Pathogen. Molecular plant-microbe interactions : MPMI 33 (4) (2020)
He Yang, Houlin Yu, Li-Jun Ma
Accessory Chromosomes in Fusarium oxysporum. Phytopathology 110 (9) (2020)
Bo Wang, Houlin Yu, Yanyan Jia, Quanbin Dong, Christian Steinberg, Claude Alabouvette, Veronique Edel-Hermann, Harold Corby Kistler, Kai Ye, Li-Jun Ma, Li Guo
Chromosome-Scale Genome Assembly of Fusarium oxysporum Strain Fo47, a Fungal Endophyte and Biocontrol Agent. Molecular plant-microbe interactions : MPMI 33 (9) (2020)
Siwen Liu, Jian Li, Yong Zhang, Na Liu, Altus Viljoen, Diane Mostert, Cunwu Zuo, Chunhua Hu, Fangcheng Bi, Huijun Gao, Ou Sheng, Guiming Deng, Qiaosong Yang, Tao Dong, Tongxin Dou, Ganjun Yi, Li-Jun Ma, Chunyu Li
Fusaric acid instigates the invasion of banana by Fusarium oxysporum f. sp. cubense TR4. The New phytologist 225 (2) (2019)
Li-Jun Ma, Jin-Rong Xu
Shuffling effector genes through mini-chromosomes. PLoS genetics 15 (9) (2019)
Dilay Hazal Ayhan, Cristina López-Díaz, Antonio Di Pietro, Li-Jun Ma
Improved Assembly of Reference Genome Fusarium oxysporum f. sp. lycopersici Strain Fol4287. Microbiology resource announcements 7 (10) (2018)
Gregory A DeIulio, Li Guo, Yong Zhang, Jonathan M Goldberg, Harold Corby Kistler, Li-Jun Ma
Kinome Expansion in the Fusarium oxysporum Species Complex Driven by Accessory Chromosomes. mSphere 3 (3) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Li-Jun Ma