Igor V Grigoriev (I V Grigoriev, Igor Grigoriev)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 144

Top Venues

The New phytologist

Nature communications

Nature genetics

Proceedings of the National Academy of Sciences of the United States of America

University of California Berkeley

State Research Institute for Genetics and Selection of Industrial Microorganisms NIIGenetika (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Berkeley

United States

Adjunct Professor :: Plant and Microbial Biology

Lawrence Berkeley National Laboratory

United States

Senior Scientist :: Biosciences

DOE Joint Genome Institute

United States

Program Head :: Fungal Genomics

Sugen/Pharmacia/Pfizer

United States

Scientist :: Bioinformatics

University of California Berkeley

United States

Postdoctoral fellow :: Chemistry

Education History

State Research Institute for Genetics and Selection of Industrial Microorganisms NIIGenetika

Russia

PHD

Publications

Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Balázs Bálint, Zsolt Merényi, Botond Hegedüs, Igor V Grigoriev, Zhihao Hou, Csenge Földi, László G Nagy
ContScout: sensitive detection and removal of contamination from annotated genomes. Nature communications 15 (1) (2024)
Alexander H Smith, Jessica Fletcher, Janne Swinnen, Karl Jonckheere, Anna Liza Bazzicalupo, Hui-Ling Liao, Gregory J Ragland, Jan Colpaert, Anna Lipzen, Sravanthi Tejomurthula, Kerrie W Barry, Igor V Grigoriev, Joske Ruytinx, Sara Branco
Comparative transcriptomics provides insight into molecular mechanisms of zinc tolerance in the ectomycorrhizal fungus Suillus luteus. G3 (Bethesda, Md.) (2024)
Yong Zhang, Siwen Liu, Diane Mostert, Houlin Yu, Mengxia Zhuo, Gengtan Li, Cunwu Zuo, Sajeet Haridas, Katie Webster, Minhui Li, Igor V Grigoriev, Ganjun Yi, Altus Viljoen, Chunyu Li, Li-Jun Ma
Virulence of banana wilt-causing fungal pathogen Fusarium oxysporum tropical race 4 is mediated by nitric oxide biosynthesis and accessory genes. Nature microbiology (2024)
Yong Zhang, Siwen Liu, Diane Mostert, Houlin Yu, Mengxia Zhuo, Gengtan Li, Cunwu Zuo, Sajeet Haridas, Katie Webster, Minhui Li, Igor V Grigoriev, Ganjun Yi, Altus Viljoen, Chunyu Li, Li-Jun Ma
Virulence of banana wilt-causing fungal pathogen Fusarium oxysporum tropical race 4 is mediated by nitric oxide biosynthesis and accessory genes. Nature microbiology (2024)
L Felipe Benites, Timothy G Stephens, Julia Van Etten, Timeeka James, William C Christian, Kerrie W Barry, Igor V Grigoriev, Timothy R McDermott, Debashish Bhattacharya
Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Communications biology 7 (1) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics (2024)
L Felipe Benites, Timothy G Stephens, Julia Van Etten, Timeeka James, William C Christian, Kerrie W Barry, Igor V Grigoriev, Timothy R McDermott, Debashish Bhattacharya
Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Communications biology 7 (1) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Balázs Bálint, Zsolt Merényi, Botond Hegedüs, Igor V Grigoriev, Zhihao Hou, Csenge Földi, László G Nagy
ContScout: sensitive detection and removal of contamination from annotated genomes. Nature communications 15 (1) (2024)
José Eduardo Marqués-Gálvez, Gaurav Pandharikar, Veronica Basso, Annegret Kohler, Nathalie D Lackus, Kerrie W Barry, Keykhosrow Keymanesh, Jenifer Johnson, Vasanth R Singan, Igor V Grigoriev, Rytas Vilgalys, Francis M Martin, Claire Veneault-Fourrey
Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development. The New phytologist 242 (2) (2024)
Sebastian Theobald, Tammi C Vesth, Elena Geib, Jane L Nybo, Jens Christian Frisvad, Thomas O Larsen, Alan Kuo, Kurt M LaButti, Ellen K Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie W Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S Kun, Ana Carolina Dos Santos Gomes, Bernard Henrissat, Jon K Magnuson, Blake A Simmons, Miia R Mäkelä, Uffe H Mortensen, Igor V Grigoriev, Matthias Brock, Scott E Baker, Ronald P de Vries, Mikael R Andersen
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation. Journal of fungi (Basel, Switzerland) 10 (7) (2024)
José Eduardo Marqués-Gálvez, Gaurav Pandharikar, Veronica Basso, Annegret Kohler, Nathalie D Lackus, Kerrie W Barry, Keykhosrow Keymanesh, Jenifer Johnson, Vasanth R Singan, Igor V Grigoriev, Rytas Vilgalys, Francis M Martin, Claire Veneault-Fourrey
Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development. The New phytologist (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
José Eduardo Marqués-Gálvez, Gaurav Pandharikar, Veronica Basso, Annegret Kohler, Nathalie D Lackus, Kerrie W Barry, Keykhosrow Keymanesh, Jenifer Johnson, Vasanth R Singan, Igor V Grigoriev, Rytas Vilgalys, Francis M Martin, Claire Veneault-Fourrey
Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development. The New phytologist 242 (2) (2024)
L Felipe Benites, Timothy G Stephens, Julia Van Etten, Timeeka James, William C Christian, Kerrie W Barry, Igor V Grigoriev, Timothy R McDermott, Debashish Bhattacharya
Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Communications biology 7 (1) (2024)
Riccardo Baroncelli, José F Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, Sajeet Haridas, William Andreopoulos, Kurt M LaButti, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Diane Bauer, Gaétan Le Floch, Miia R Mäkelä, Elodie Drula, Bernard Henrissat, Igor V Grigoriev, Jo Anne Crouch, Ronald P de Vries, Serenella A Sukno, Michael R Thon
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13 (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
L Felipe Benites, Timothy G Stephens, Julia Van Etten, Timeeka James, William C Christian, Kerrie W Barry, Igor V Grigoriev, Timothy R McDermott, Debashish Bhattacharya
Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Communications biology 7 (1) (2024)
Riccardo Baroncelli, José F Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, Sajeet Haridas, William Andreopoulos, Kurt M LaButti, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Diane Bauer, Gaétan Le Floch, Miia R Mäkelä, Elodie Drula, Bernard Henrissat, Igor V Grigoriev, Jo Anne Crouch, Ronald P de Vries, Serenella A Sukno, Michael R Thon
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13 (2024)
Katharina O Barros, Megan Mader, David J Krause, Jasmyn Pangilinan, William Andreopoulos, Anna Lipzen, Stephen J Mondo, Igor V Grigoriev, Carlos A Rosa, Trey K Sato, Chris Todd Hittinger
Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces. Biotechnology for biofuels and bioproducts 17 (1) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Carlos Lax, Stephen J Mondo, Macario Osorio-Concepción, Alexander Martynov, María Corrochano-Luque, Gabriel Gutierrez, Robert Riley, Anna Lipzen, Jie Guo, Hope Hundley, Mojgan Amirebrahimi, Vivian Ng, Damaris Lorenzo-Gutiérrez, Ulrike Binder, Junhuan Yang, Yuanda Song, David Cánovas, Eusebio Navarro, Michael Freitag, Toni Gabaldon, Igor V Grigoriev, Luis M Corrochano, Francisco Esteban Nicolás, Victoriano Garre
Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales. Nature communications 15 (1) (2024)
Carlos Lax, Stephen J Mondo, Macario Osorio-Concepción, Alexander Martynov, María Corrochano-Luque, Gabriel Gutierrez, Robert Riley, Anna Lipzen, Jie Guo, Hope Hundley, Mojgan Amirebrahimi, Vivian Ng, Damaris Lorenzo-Gutiérrez, Ulrike Binder, Junhuan Yang, Yuanda Song, David Cánovas, Eusebio Navarro, Michael Freitag, Toni Gabaldon, Igor V Grigoriev, Luis M Corrochano, Francisco Esteban Nicolás, Victoriano Garre
Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales. Nature communications 15 (1) (2024)
Ruben Eichfeld, Lisa K Mahdi, Concetta De Quattro, Laura Armbruster, Asmamaw B Endeshaw, Shingo Miyauchi, Margareta J Hellmann, Stefan Cord-Landwehr, Daniel Peterson, Vasanth R Singan, Kathleen Lail, Emily Savage, Vivian Ng, Igor V Grigoriev, Gregor Langen, Bruno M Moerschbacher, Alga Zuccaro
Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18-CBM5 chitinase to protect their hosts. The New phytologist (2024)
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T B K Reddy, Sara Calhoun, Richard D Hayes, Robin R Rohwer, Zhichao Zhou, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Nigel J Mouncey, Tijana Glavina Del Rio, Igor V Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D McMahon, Tanja Woyke, Emiley A Eloe-Fadrosh
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota. Scientific data 11 (1) (2024)
Balázs Bálint, Zsolt Merényi, Botond Hegedüs, Igor V Grigoriev, Zhihao Hou, Csenge Földi, László G Nagy
ContScout: sensitive detection and removal of contamination from annotated genomes. Nature communications 15 (1) (2024)
Andrei Stecca Steindorff, Maria Victoria Aguilar Pontes, Aaron J Robinson, Bill Andreopoulos, Kurt M LaButti, Alan Kuo, Stephen J Mondo, Robert Riley, Robert Otillar, Sajeet Haridas, Anna Lipzen, Jerry W Jenkins, Jeremy Schmutz, Alicia Clum, Ian D Reid, Marie-Claude Moisan, Gregory Butler, Thi Truc Minh Nguyen, Ken Dewar, Gavin C Conant, Elodie Drula, Bernard Henrissat, Colleen M Hansel, Steven Singer, Miriam I Hutchinson, Ronald P de Vries, Donald O Natvig, Amy J Powell, Adrian Tsang, Igor V Grigoriev
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses. Communications biology 7 (1) (2024)
Carlos Lax, Stephen J Mondo, Macario Osorio-Concepción, Alexander Martynov, María Corrochano-Luque, Gabriel Gutierrez, Robert Riley, Anna Lipzen, Jie Guo, Hope Hundley, Mojgan Amirebrahimi, Vivian Ng, Damaris Lorenzo-Gutiérrez, Ulrike Binder, Junhuan Yang, Yuanda Song, David Cánovas, Eusebio Navarro, Michael Freitag, Toni Gabaldon, Igor V Grigoriev, Luis M Corrochano, Francisco Esteban Nicolás, Victoriano Garre
Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales. Nature communications 15 (1) (2024)
Katharina O Barros, Megan Mader, David J Krause, Jasmyn Pangilinan, William Andreopoulos, Anna Lipzen, Stephen J Mondo, Igor V Grigoriev, Carlos A Rosa, Trey K Sato, Chris Todd Hittinger
Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces. Biotechnology for biofuels and bioproducts 17 (1) (2024)
Sebastian Theobald, Tammi C Vesth, Elena Geib, Jane L Nybo, Jens Christian Frisvad, Thomas O Larsen, Alan Kuo, Kurt M LaButti, Ellen K Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie W Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S Kun, Ana Carolina Dos Santos Gomes, Bernard Henrissat, Jon K Magnuson, Blake A Simmons, Miia R Mäkelä, Uffe H Mortensen, Igor V Grigoriev, Matthias Brock, Scott E Baker, Ronald P de Vries, Mikael R Andersen
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation. Journal of fungi (Basel, Switzerland) 10 (7) (2024)
Vayu Maini Rekdal, José Manuel Villalobos-Escobedo, Nabila Rodriguez-Valeron, Mikel Olaizola Garcia, Diego Prado Vásquez, Alexander Rosales, Pia M Sörensen, Edward E K Baidoo, Ana Calheiros de Carvalho, Robert Riley, Anna Lipzen, Guifen He, Mi Yan, Sajeet Haridas, Christopher Daum, Yuko Yoshinaga, Vivian Ng, Igor V Grigoriev, Rasmus Munk, Christofora Hanny Wijaya, Lilis Nuraida, Isty Damayanti, Pablo Cruz-Morales, Jay D Keasling
Neurospora intermedia from a traditional fermented food enables waste-to-food conversion. Nature microbiology (2024)
Riccardo Baroncelli, José F Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, Sajeet Haridas, William Andreopoulos, Kurt M LaButti, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Diane Bauer, Gaétan Le Floch, Miia R Mäkelä, Elodie Drula, Bernard Henrissat, Igor V Grigoriev, Jo Anne Crouch, Ronald P de Vries, Serenella A Sukno, Michael R Thon
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13 (2024)
Sebastian Theobald, Tammi C Vesth, Elena Geib, Jane L Nybo, Jens Christian Frisvad, Thomas O Larsen, Alan Kuo, Kurt M LaButti, Ellen K Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie W Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S Kun, Ana Carolina Dos Santos Gomes, Bernard Henrissat, Jon K Magnuson, Blake A Simmons, Miia R Mäkelä, Uffe H Mortensen, Igor V Grigoriev, Matthias Brock, Scott E Baker, Ronald P de Vries, Mikael R Andersen
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation. Journal of fungi (Basel, Switzerland) 10 (7) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Lucas Auer, Marc Buée, Laure Fauchery, Vincent Lombard, Kerry W Barry, Alicia Clum, Alex Copeland, Chris Daum, Brian Foster, Kurt LaButti, Vasanth Singan, Yuko Yoshinaga, Christine Martineau, Manuel Alfaro, Federico J Castillo, J Bosco Imbert, Lucia Ramírez, Raoul Castanera, Antonio G Pisabarro, Roger D Finlay, Björn Lindahl, Ake Olson, Armand Séguin, Annegret Kohler, Bernard Henrissat, Igor V Grigoriev, Francis M Martin
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems. The New phytologist (2023)
Kristian Barrett, Cameron J Hunt, Lene Lange, Igor V Grigoriev, Anne S Meyer
Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes. Nucleic acids research (2023)
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason C Slot, Yuichi Sakamoto, Jacob Lucas Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Javier Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen W Hughes, Juan L Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris A Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt M LaButti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel T Martínez, Yang Xiao, John G Gibbons, Kazuhisa Terashima, Igor V Grigoriev, David S Hibbett
A global phylogenomic analysis of the shiitake genus Lentinula . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
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Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi. Nature communications 14 (1) (2023)
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Yi-Fei Sun, Annie Lebreton, Jia-Hui Xing, Yu-Xuan Fang, Jing Si, Emmanuelle Morin, Shingo Miyauchi, Elodie Drula, Steven Ahrendt, Kelly Cobaugh, Anna Lipzen, Maxim Koriabine, Robert Riley, Annegret Kohler, Kerrie W Barry, Bernard Henrissat, Igor V Grigoriev, Francis M Martin, Bao-Kai Cui
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species. Journal of fungi (Basel, Switzerland) 8 (3) (2022)
Richard G Dorrell, Alan Kuo, Zoltan Fussy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna Mg Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel B Dacks, Chris Bowler, Igor V Grigoriev, Connie Lovejoy
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae. Life science alliance 6 (3) (2022)
Richard G Dorrell, Alan Kuo, Zoltan Fussy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna Mg Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel B Dacks, Chris Bowler, Igor V Grigoriev, Connie Lovejoy
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae. Life science alliance 6 (3) (2022)
Naihao Ye, Wentao Han, Andrew Toseland, Yitao Wang, Xiao Fan, Dong Xu, Cock Van Oosterhout, null null, Igor V Grigoriev, Alessandro Tagliabue, Jian Zhang, Yan Zhang, Jian Ma, Huan Qiu, Youxun Li, Xiaowen Zhang, Thomas Mock
The role of zinc in the adaptive evolution of polar phytoplankton. Nature ecology & evolution 6 (7) (2022)
Anthony Duncan, Kerrie W Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G Tringe, Klaus U Valentin, Neha Varghese, Asaf Salamov, Igor V Grigoriev, Richard M Leggett, Vincent Moulton, Thomas Mock
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. Microbiome 10 (1) (2022)
Domitille Jarrige, Sajeet Haridas, Claudine Bleykasten-Grosshans, Muriel Joly, Thierry Nadalig, Martine Sancelme, Stéphane Vuilleumier, Igor V Grigoriev, Pierre Amato, Françoise Bringel
High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water. G3 (Bethesda, Md.) 12 (12) (2022)
Valerie A Buijs, Johannes Z Groenewald, Sajeet Haridas, Kurt M LaButti, Anna Lipzen, Francis M Martin, Kerrie W Barry, Igor V Grigoriev, Pedro W Crous, Michael F Seidl
Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis. G3 (Bethesda, Md.) 12 (5) (2022)
Harris A Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L Allende, John M Archibald, Miklós Bálint, Katharine B Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L Blaxter, Jing Cai, Nicolette D Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K Childers, Jonathan A Coddington, Dalia A Conde, Montserrat Corominas, Keith A Crandall, Andrew J Crawford, Federica DiPalma, Richard Durbin, ThankGod E Ebenezer, Scott V Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A Gibbs, Marcus Thomas Pius Gilbert, Melissa M Goldstein, Jennifer Ann Marshall Graves, Henry T Greely, Igor V Grigoriev, Kevin J Hackett, Neil Hall, David Haussler, Kristofer M Helgen, Carolyn J Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D Jarvis, Warren E Johnson, Steven J M Jones, Elinor K Karlsson, Paul J Kersey, Jin-Hyoung Kim, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, James H Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A K Mazet, Camila J Mazzoni, Eugene W Myers, Rachel J O'Neill, Sadye Paez, Hyun Park, Gene E Robinson, Cristina Roquet, Oliver A Ryder, Jamal S M Sabir, H Bradley Shaffer, Timothy M Shank, Jacob S Sherkow, Pamela S Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L Wilson, Xun Xu, Huanming Yang, Anne D Yoder, Guo-Jie Zhang
The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Andrei Stecca Steindorff, Kyungyong Seong, Akiko Carver, Sara Calhoun, Monika S Fischer, Kyra Stillman, Haowen Liu, Elodie Drula, Bernard Henrissat, Hunter J Simpson, Jonathan S Schilling, Anna Lipzen, Guifen He, Mi Yan, Bill Andreopoulos, Jasmyn Pangilinan, Kurt M LaButti, Vivian Ng, Matthew F Traxler, Thomas D Bruns, Igor V Grigoriev
Diversity of genomic adaptations to the post-fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development. The New phytologist 236 (3) (2022)
Richard G Dorrell, Alan Kuo, Zoltan Fussy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna Mg Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel B Dacks, Chris Bowler, Igor V Grigoriev, Connie Lovejoy
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae. Life science alliance 6 (3) (2022)
Richard G Dorrell, Alan Kuo, Zoltan Fussy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna Mg Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel B Dacks, Chris Bowler, Igor V Grigoriev, Connie Lovejoy
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae. Life science alliance 6 (3) (2022)
Richard G Dorrell, Alan Kuo, Zoltan Fussy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna Mg Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel B Dacks, Chris Bowler, Igor V Grigoriev, Connie Lovejoy
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae. Life science alliance 6 (3) (2022)

Igor V Grigoriev.css-eqlu8i{font-size:small;padding-left:4px;} (I V Grigoriev, Igor Grigoriev)

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Igor V Grigoriev (I V Grigoriev, Igor Grigoriev)