Christina A Cuomo (Christina Cuomo)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 102

Top Venues

mBio

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Microbiology resource announcements

This page only lists publications with an associated author ORCID identifier.

Publications

Marco A Coelho, Marco A Coelho, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion. bioRxiv : the preprint server for biology (2024)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. Antimicrobial agents and chemotherapy (2024)
Marco A Coelho, Marco A Coelho, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion. bioRxiv : the preprint server for biology (2024)
Marco A Coelho, Márcia David-Palma, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. PLoS biology 22 (6) (2024)
Marco A Coelho, Márcia David-Palma, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. PLoS biology 22 (6) (2024)
Jeffrey M Rybak, Jinhong Xie, Adela Martin-Vicente, Xabier Guruceaga, Harrison I Thorn, Ashley V Nywening, Wenbo Ge, Ana Camila Oliveira Souza, Amol Carl Shetty, Carrie McCracken, Vincent M Bruno, Josie E Parker, Steven L Kelly, Hannah M Snell, Christina A Cuomo, P David Rogers, Jarrod R Fortwendel
A secondary mechanism of action for triazole antifungals in Aspergillus fumigatus mediated by hmg1. Nature communications 15 (1) (2024)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. Antimicrobial agents and chemotherapy (2024)
Marco A Coelho, Marco A Coelho, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion. bioRxiv : the preprint server for biology (2024)
Marco A Coelho, Marco A Coelho, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion. bioRxiv : the preprint server for biology (2024)
Jeffrey M Rybak, Jinhong Xie, Adela Martin-Vicente, Xabier Guruceaga, Harrison I Thorn, Ashley V Nywening, Wenbo Ge, Ana Camila Oliveira Souza, Amol Carl Shetty, Carrie McCracken, Vincent M Bruno, Josie E Parker, Steven L Kelly, Hannah M Snell, Christina A Cuomo, P David Rogers, Jarrod R Fortwendel
A secondary mechanism of action for triazole antifungals in Aspergillus fumigatus mediated by hmg1. Nature communications 15 (1) (2024)
Marco A Coelho, Márcia David-Palma, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. PLoS biology 22 (6) (2024)
Marco A Coelho, Márcia David-Palma, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. PLoS biology 22 (6) (2024)
Marco A Coelho, Marco A Coelho, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion. bioRxiv : the preprint server for biology (2024)
Nicholas C Carleson, Terrance Shea, Christina A Cuomo
Improved genome assembly of Candida auris strain B8441 and annotation of B11205. Microbiology resource announcements (2024)
Marco A Coelho, Márcia David-Palma, Terrance Shea, Katharine Bowers, Sage McGinley-Smith, Arman W Mohammad, Andreas Gnirke, Andrey M Yurkov, Minou Nowrousian, Sheng Sun, Christina A Cuomo, Joseph Heitman
Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. PLoS biology 22 (6) (2024)
Poppy C S Sephton-Clark, Scott A McConnell, Nina Grossman, Rosanna P Baker, Quigly Dragotakes, Yunfan Fan, Man Shun Fu, Gracen Gerbig, Seth Greengo, J Marie Hardwick, Madhura Kulkarni, Stuart M Levitz, Joshua D Nosanchuk, Shmuel Shoham, Daniel F Q Smith, Piotr Stempinski, Winston Timp, Maggie P Wear, Christina A Cuomo, Arturo Casadevall
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Poppy C S Sephton-Clark, Scott A McConnell, Nina Grossman, Rosanna P Baker, Quigly Dragotakes, Yunfan Fan, Man Shun Fu, Gracen Gerbig, Seth Greengo, J Marie Hardwick, Madhura Kulkarni, Stuart M Levitz, Joshua D Nosanchuk, Shmuel Shoham, Daniel F Q Smith, Piotr Stempinski, Winston Timp, Maggie P Wear, Christina A Cuomo, Arturo Casadevall
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Poppy Sephton-Clark, Thu Nguyen, Ngo Thi Hoa, Philip Ashton, H Rogier van Doorn, Vo Trieu Ly, Thuy Le, Christina A Cuomo
Impact of pathogen genetics on clinical phenotypes in a population of Talaromyces marneffei from Vietnam. bioRxiv : the preprint server for biology (2023)
Poppy C S Sephton-Clark, Scott A McConnell, Nina Grossman, Rosanna P Baker, Quigly Dragotakes, Yunfan Fan, Man Shun Fu, Gracen Gerbig, Seth Greengo, J Marie Hardwick, Madhura Kulkarni, Stuart M Levitz, Joshua D Nosanchuk, Shmuel Shoham, Daniel F Q Smith, Piotr Stempinski, Winston Timp, Maggie P Wear, Christina A Cuomo, Arturo Casadevall
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Anuradha Chowdhary, Juvva Kishan Srikanth, Sebastian Wurster, Raj Kumar, Jason T Mohabir, Shashidhar Tatavarthy, Vikas Mittal, Preeti Rani, Purabi Barman, Neelam Sachdeva, Ashutosh Singh, Brijesh Sharma, Ying Jiang, Christina A Cuomo, Dimitrios P Kontoyiannis
Multimodal analysis of the COVID-19-associated mucormycosis outbreak in Delhi, India indicates the convergence of clinical and environmental risk factors. Mycoses (2023)
Sosie Yorki, Terrance Shea, Christina A Cuomo, Bruce J Walker, Regina C LaRocque, Abigail L Manson, Ashlee M Earl, Colin J Worby
Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes. Briefings in bioinformatics (2023)
Sosie Yorki, Terrance Shea, Christina A Cuomo, Bruce J Walker, Regina C LaRocque, Abigail L Manson, Ashlee M Earl, Colin J Worby
Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes. Briefings in bioinformatics 24 (2) (2023)
Poppy C S Sephton-Clark, Elvis Temfack, Jennifer L Tenor, Dena L Toffaletti, Angela Loyse, Síle F Molloy, John R Perfect, Tihana Bicanic, Thomas S Harrison, Olivier Lortholary, Charles Kouanfack, Christina A Cuomo
Genetic diversity and microevolution in clinical Cryptococcus isolates from Cameroon. Medical mycology (2023)
Poppy C S Sephton-Clark, Scott A McConnell, Nina Grossman, Rosanna P Baker, Quigly Dragotakes, Yunfan Fan, Man Shun Fu, Gracen Gerbig, Seth Greengo, J Marie Hardwick, Madhura Kulkarni, Stuart M Levitz, Joshua D Nosanchuk, Shmuel Shoham, Daniel F Q Smith, Piotr Stempinski, Winston Timp, Maggie P Wear, Christina A Cuomo, Arturo Casadevall
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Sosie Yorki, Terrance Shea, Christina A Cuomo, Bruce J Walker, Regina C LaRocque, Abigail L Manson, Ashlee M Earl, Colin J Worby
Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes. Briefings in bioinformatics 24 (2) (2023)
Anuradha Chowdhary, Juvva Kishan Srikanth, Sebastian Wurster, Raj Kumar, Jason T Mohabir, Shashidhar Tatavarthy, Vikas Mittal, Preeti Rani, Purabi Barman, Neelam Sachdeva, Ashutosh Singh, Brijesh Sharma, Ying Jiang, Christina A Cuomo, Dimitrios P Kontoyiannis
Multimodal analysis of the COVID-19-associated mucormycosis outbreak in Delhi, India indicates the convergence of clinical and environmental risk factors. Mycoses (2023)
Poppy C S Sephton-Clark, Scott A McConnell, Nina Grossman, Rosanna P Baker, Quigly Dragotakes, Yunfan Fan, Man Shun Fu, Gracen Gerbig, Seth Greengo, J Marie Hardwick, Madhura Kulkarni, Stuart M Levitz, Joshua D Nosanchuk, Shmuel Shoham, Daniel F Q Smith, Piotr Stempinski, Winston Timp, Maggie P Wear, Christina A Cuomo, Arturo Casadevall
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Sosie Yorki, Terrance Shea, Christina A Cuomo, Bruce J Walker, Regina C LaRocque, Abigail L Manson, Ashlee M Earl, Colin J Worby
Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes. Briefings in bioinformatics (2023)
Patrick D Schloss, Christina A Cuomo
More evidence of Impact Factor Mania. Microbiology spectrum (2023)
Terrance Shea, Jason T Mohabir, Tania Kurbessoian, Brittany Berdy, James Fontaine, Andreas Gnirke, Jonathan Livny, Jason E Stajich, Christina A Cuomo
Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen. Microbiology resource announcements (2023)
Poppy C S Sephton-Clark, Scott A McConnell, Nina Grossman, Rosanna P Baker, Quigly Dragotakes, Yunfan Fan, Man Shun Fu, Gracen Gerbig, Seth Greengo, J Marie Hardwick, Madhura Kulkarni, Stuart M Levitz, Joshua D Nosanchuk, Shmuel Shoham, Daniel F Q Smith, Piotr Stempinski, Winston Timp, Maggie P Wear, Christina A Cuomo, Arturo Casadevall
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Poppy C S Sephton-Clark, Scott A McConnell, Nina Grossman, Rosanna P Baker, Quigly Dragotakes, Yunfan Fan, Man Shun Fu, Gracen Gerbig, Seth Greengo, J Marie Hardwick, Madhura Kulkarni, Stuart M Levitz, Joshua D Nosanchuk, Shmuel Shoham, Daniel F Q Smith, Piotr Stempinski, Winston Timp, Maggie P Wear, Christina A Cuomo, Arturo Casadevall
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Nicola T Case, Judith Berman, David S Blehert, Robert A Cramer, Christina A Cuomo, Cameron R Currie, Iuliana V Ene, Matthew C Fisher, Lillian K Fritz-Laylin, Aleeza Cara Gerstein, N Louise Glass, Neil A R Gow, Sarah Jane Gurr, Chris Todd Hittinger, Tobias M Hohl, Iliyan D Iliev, Timothy Y James, Hailing Jin, Bruce S Klein, James W Kronstad, Jeffrey M Lorch, Victoria McGovern, Aaron P Mitchell, Julie A Segre, Rebecca S Shapiro, Donald C Sheppard, Anita Sil, Jason E Stajich, Eva Holtgrewe Stukenbrock, John W Taylor, Dawn A Thompson, Gerard D Wright, Joseph Heitman, Leah E Cowen
The future of fungi: threats and opportunities. G3 (Bethesda, Md.) 12 (11) (2022)
Kevin R Amses, D Rabern Simmons, Joyce E Longcore, Stephen J Mondo, Kensuke Seto, Gustavo H Jerônimo, Anne E Bonds, C Alisha Quandt, William J Davis, Ying Chang, Brian A Federici, Alan Kuo, Kurt M LaButti, Jasmyn Pangilinan, William Andreopoulos, Andrew Tritt, Robert Riley, Hope Hundley, Jenifer Johnson, Anna Lipzen, Kerrie Barry, B Franz Lang, Christina A Cuomo, Nicolas E Buchler, Igor V Grigoriev, Joseph W Spatafora, Jason E Stajich, Timothy Y James
Diploid-dominant life cycles characterize the early evolution of Fungi. Proceedings of the National Academy of Sciences of the United States of America 119 (36) (2022)
Christina A Cuomo
Opening Up Editorial Boards. Microbiology spectrum 11 (1) (2022)
Jose F Muñoz, Rory M Welsh, Terrance Shea, Dhwani Batra, Lalitha Gade, Dakota Howard, Lori A Rowe, Jacques F Meis, Anastasia P Litvintseva, Christina A Cuomo
Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris. Genetics 218 (1) (2022)
Christina A Cuomo
Opening Up Editorial Boards. Microbiology spectrum 11 (1) (2022)
Neil A R Gow, Carolyn Johnson, Judith Berman, Alix T Coste, Christina A Cuomo, David S Perlin, Tihana Bicanic, Thomas S Harrison, Nathan P Wiederhold, Michael J Bromley, Tom Chiller, Keegan Edgar
The importance of antimicrobial resistance in medical mycology. Nature communications 13 (1) (2022)
Christina A Cuomo
Opening Up Editorial Boards. Microbiology spectrum 11 (1) (2022)
Christina A Cuomo
Opening Up Editorial Boards. Microbiology spectrum (2022)
Nicolas Helmstetter, Aleksandra D Chybowska, Christopher Delaney, Alessandra Da Silva Dantas, Hugh Gifford, Theresa Wacker, Carol A Munro, Adilia Warris, Brian Jones, Christina A Cuomo, Duncan Wilson, Gordon Ramage, Rhys A Farrer
Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes, and drug targets. Genetics 221 (1) (2022)
Poppy Sephton-Clark, Jennifer L Tenor, Dena L Toffaletti, Nancy Meyers, Charles Giamberardino, Síle F Molloy, Julia R Palmucci, Adrienne Chan, Tarsizio Chikaonda, Robert Heyderman, Mina Hosseinipour, Newton Kalata, Cecilia Kanyama, Christopher Kukacha, Duncan Lupiya, Henry C Mwandumba, Thomas Harrison, Tihana Bicanic, John R Perfect, Christina A Cuomo
Genomic Variation across a Clinical Cryptococcus Population Linked to Disease Outcome. mBio (2022)
Andrew Ryan Passer, Shelly Applen Clancey, Terrance Shea, Márcia David-Palma, Anna Floyd Averette, Teun Boekhout, Betina M Porcel, Minou Nowrousian, Christina A Cuomo, Sheng Sun, Joseph Heitman, Marco A Coelho
Obligate sexual reproduction of a homothallic fungus closely related to the Cryptococcus pathogenic species complex. eLife 11 (2022)
Chen-Hsin Yu, Poppy C S Sephton-Clark, Jennifer L Tenor, Dena L Toffaletti, Charles Giamberardino, Miriam Haverkamp, Christina A Cuomo, John R Perfect
Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System. mBio (2021)
John P Fellers, Sharadha Sakthikumar, Fei He, Katie McRell, Guus Bakkeren, Christina A Cuomo, James A Kolmer
Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations. G3 (Bethesda, Md.) 11 (9) (2021)
Moira Kelly, Frank Pasmans, Jose F Muñoz, Terrance P Shea, Salvador Carranza, Christina A Cuomo, An Martel
Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic. Nature communications 12 (1) (2021)
Christina A Cuomo
The Relaunch of Microbiology Spectrum. Microbiology spectrum 9 (1) (2021)
Jillian Romsdahl, Zachary Schultzhaus, Christina A Cuomo, Hong Dong, Hashanthi Abeyratne-Perera, William Judson Hervey, Zheng Wang
Phenotypic Characterization and Comparative Genomics of the Melanin-Producing Yeast Exophiala lecanii-corni Reveals a Distinct Stress Tolerance Profile and Reduced Ribosomal Genetic Content. Journal of fungi (Basel, Switzerland) 7 (12) (2021)
Man Shun Fu, Livia C Liporagi-Lopes, Samuel R Dos Santos, Jennifer L Tenor, John R Perfect, Christina A Cuomo, Arturo Casadevall
Amoeba Predation of Cryptococcus neoformans Results in Pleiotropic Changes to Traits Associated with Virulence. mBio 12 (2) (2021)
David M Geiser, Abdullah M S Al-Hatmi, Takayuki Aoki, Tsutomu Arie, Virgilio Balmas, Irene Barnes, Gary C Bergstrom, Madan K Bhattacharyya, Cheryl L Blomquist, Robert L Bowden, Balázs Brankovics, Daren W Brown, Lester W Burgess, Kathryn Bushley, Mark Busman, José Francisco Cano-Lira, Joseph D Carrillo, Hao-Xun Chang, Chi-Yu Chen, Wanquan Chen, Martin Chilvers, Sofia Chulze, Jeffrey J Coleman, Christina A Cuomo, Z Wilhelm de Beer, G Sybren de Hoog, Johanna Del Castillo-Múnera, Emerson Medeiros Del Ponte, Javier Diéguez-Uribeondo, Antonio Di Pietro, Véronique Edel-Hermann, Wade H Elmer, Lynn Epstein, Akif Eskalen, Maria Carmela Esposto, Kathryne L Everts, Sylvia P Fernández-Pavía, Gilvan Ferreira da Silva, Nora A Foroud, Gerda Fourie, Rasmus J N Frandsen, Stanley Freeman, Michael Freitag, Omer Frenkel, Kevin K Fuller, Tatiana Gagkaeva, Donald M Gardiner, Anthony E Glenn, Scott E Gold, Thomas R Gordon, Nancy F Gregory, Marieka Gryzenhout, Josep Guarro, Beth K Gugino, Santiago Gutierrez, Kim E Hammond-Kosack, Linda J Harris, Mónika Homa, Cheng-Fang Hong, László Hornok, Jenn-Wen Huang, Macit Ilkit, Adriaana Jacobs, Karin Jacobs, Cong Jiang, María Del Mar Jiménez-Gasco, Seogchan Kang, Matthew T Kasson, Kemal Kazan, John C Kennell, Hye-Seon Kim, H Corby Kistler, Gretchen A Kuldau, Tomasz Kulik, Oliver Kurzai, Imane Laraba, Matthew H Laurence, Theresa Lee, Yin-Won Lee, Yong-Hwan Lee, John F Leslie, Edward C Y Liew, Lily W Lofton, Antonio F Logrieco, Manuel S López-Berges, Alicia G Luque, Erik Lysøe, Li-Jun Ma, Robert E Marra, Frank N Martin, Sara R May, Susan P McCormick, Chyanna McGee, Jacques F Meis, Quirico Migheli, Nik M I Mohamed Nor, Michel Monod, Antonio Moretti, Diane Mostert, Giuseppina Mulè, Françoise Munaut, Gary P Munkvold, Paul Nicholson, Marcio Nucci, Kerry O'Donnell, Matias Pasquali, Ludwig H Pfenning, Anna Prigitano, Robert H Proctor, Stéphane Ranque, Stephen A Rehner, Martijn Rep, Gerardo Rodríguez-Alvarado, Lindy Joy Rose, Mitchell G Roth, Carmen Ruiz-Roldán, Amgad A Saleh, Baharuddin Salleh, Hyunkyu Sang, María Mercedes Scandiani, Jonathan Scauflaire, David G Schmale, Dylan P G Short, Adnan Šišić, Jason A Smith, Christopher W Smyth, Hokyoung Son, Ellie Spahr, Jason E Stajich, Emma T Steenkamp, Christian Steinberg, Rajagopal Subramaniam, Haruhisa Suga, Brett A Summerell, Antonella Susca, Cassandra L Swett, Christopher Toomajian, Terry J Torres-Cruz, Anna Maria Tortorano, Martin Urban, Lisa J Vaillancourt, Gary E Vallad, Theo A J van der Lee, Dan Vanderpool, Anne D van Diepeningen, Martha M Vaughan, Eduard Venter, Marcele Vermeulen, Paul E Verweij, Altus Viljoen, Cees Waalwijk, Emma C Wallace, Grit Walther, Jie Wang, Todd J Ward, Brian L Wickes, Nathan P Wiederhold, Michael J Wingfield, Ana K M Wood, Jin-Rong Xu, Xiao-Bing Yang, Tapani Yli-Mattila, Sung-Hwan Yun, Latiffah Zakaria, Hao Zhang, Ning Zhang, Sean X Zhang, Xue Zhang
Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex. Phytopathology 111 (7) (2021)
Ousmane H Cisse, Liang Ma, John P Dekker, Pavel P Khil, Jung-Ho Youn, Jason M Brenchley, Robert V Blair, Bapi Pahar, Magali Chabé, Koen K A Van Rompay, Rebekah Keesler, Antti Sukura, Vanessa M Hirsch, Geetha Kutty, Yueqin Liu, Li Peng, Jie Chen, Jun Song, Christiane Weissenbacher-Lang, Jie Xu, Nathan S Upham, Jason E Stajich, Christina A Cuomo, Melanie T Cushion, Joseph A Kovacs
Genomic insights into the host specific adaptation of the Pneumocystis genus. Communications biology 4 (1) (2021)
Matthew Chung, Vincent M Bruno, David A Rasko, Christina A Cuomo, Jose F Muñoz, Jonathan Livny, Amol Carl Shetty, Anup Mahurkar, Julie C Dunning Hotopp
Best practices on the differential expression analysis of multi-species RNA-seq. Genome biology 22 (1) (2021)
Hans Carolus, Siebe Pierson, Jose F Muñoz, Ana Subotić, Rita B Cruz, Christina A Cuomo, Patrick Van Dijck
Genome-Wide Analysis of Experimentally Evolved Candida auris Reveals Multiple Novel Mechanisms of Multidrug Resistance. mBio 12 (2) (2021)
Christina A Cuomo, Terrance Shea, Thu Nguyen, Philip Ashton, John Perfect, Thuy Le
Complete Genome Sequences for Two Talaromyces marneffei Clinical Isolates from Northern and Southern Vietnam. Microbiology resource announcements 9 (2) (2020)
Christina A Cuomo, Alexandra Serris
Tracking a Global Threat: a New Genotyping Method for Candida auris. mBio 11 (2) (2020)
Kali R Iyer, Kaddy Camara, Martin Daniel-Ivad, Richard Trilles, Sheila M Pimentel-Elardo, Jen L Fossen, Karen Marchillo, Zhongle Liu, Shakti Singh, Jose F Muñoz, Sang Hu Kim, John A Porco, Christina A Cuomo, Noelle S Williams, Ashraf S Ibrahim, John E Edwards, David R Andes, Justin R Nodwell, Lauren E Brown, Luke Whitesell, Nicole Robbins, Leah E Cowen
An oxindole efflux inhibitor potentiates azoles and impairs virulence in the fungal pathogen Candida auris. Nature communications 11 (1) (2020)
Nancy A Chow, Jose F Muñoz, Lalitha Gade, Elizabeth L Berkow, Xiao Li, Rory M Welsh, Kaitlin Forsberg, Shawn R Lockhart, Rodney Adam, Alexandra Serris, Ana-Alastruey Izquierdo, Sahar Althawadi, Ana Belén Araúz, Ronen Ben-Ami, Amrita Bharat, Belinda Calvo, Marie Desnos-Olivier, Patricia Escandón, Dianne Gardam, Revathi Gunturu, Christopher H Heath, Oliver Kurzai, Ronny Martin, Anastasia P Litvintseva, Christina A Cuomo
Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses. mBio 11 (2) (2020)
Matthew C Fisher, Sarah J Gurr, Christina A Cuomo, David S Blehert, Hailing Jin, Eva H Stukenbrock, Jason E Stajich, Regine Kahmann, Charles Boone, David W Denning, Neil A R Gow, Bruce S Klein, James W Kronstad, Donald C Sheppard, John W Taylor, Gerard D Wright, Joseph Heitman, Arturo Casadevall, Leah E Cowen
Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture. mBio 11 (3) (2020)
Jeffrey M Rybak, Jose F Muñoz, Katherine S Barker, Josie E Parker, Brooke D Esquivel, Elizabeth L Berkow, Shawn R Lockhart, Lalitha Gade, Glen E Palmer, Theodore C White, Steve L Kelly, Christina A Cuomo, P David Rogers
Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris. mBio 11 (3) (2020)
Liang Ma, Zehua Chen, Da Wei Huang, Ousmane H Cisse, Jamie L Rothenburger, Alice Latinne, Lisa Bishop, Robert Blair, Jason M Brenchley, Magali Chabé, Xilong Deng, Vanessa Hirsch, Rebekah Keesler, Geetha Kutty, Yueqin Liu, Daniel Margolis, Serge Morand, Bapi Pahar, Li Peng, Koen K A Van Rompay, Xiaohong Song, Jun Song, Antti Sukura, Sabrina Thapar, Honghui Wang, Christiane Weissenbacher-Lang, Jie Xu, Chao-Hung Lee, Claire Jardine, Richard A Lempicki, Melanie T Cushion, Christina A Cuomo, Joseph A Kovacs
Diversity and Complexity of the Large Surface Protein Family in the Compacted Genomes of Multiple Pneumocystis Species. mBio 11 (2) (2020)
Tsidiso G Maphanga, Monica Birkhead, Jose F Muñoz, Mushal Allam, Thokozile G Zulu, Christina A Cuomo, Ilan S Schwartz, Arshad Ismail, Serisha D Naicker, Ruth S Mpembe, Craig Corcoran, Sybren de Hoog, Chris Kenyon, Andrew M Borman, John A Frean, Nelesh P Govender MMed
Human Blastomycosis in South Africa Caused by Blastomyces percursus and Blastomyces emzantsi sp. nov., 1967 to 2014. Journal of clinical microbiology 58 (3) (2020)
Jian Bing, Tianren Hu, Qiushi Zheng, Jose F Muñoz, Christina A Cuomo, Guanghua Huang
Experimental Evolution Identifies Adaptive Aneuploidy as a Mechanism of Fluconazole Resistance in Candida auris. Antimicrobial agents and chemotherapy 65 (1) (2020)
Rhys A Farrer, Miwha Chang, Michael J Davis, Lucy van Dorp, Dong-Hoon Yang, Terrance Shea, Thomas R Sewell, Wieland Meyer, Francois Balloux, Hannah M Edwards, Duncan Chanda, Geoffrey Kwenda, Mathieu Vanhove, Yun C Chang, Christina A Cuomo, Matthew C Fisher, Kyung J Kwon-Chung
A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands. mBio 10 (6) (2019)
Kirthi C Reddy, Tal Dror, Ryan S Underwood, Guled A Osman, Corrina R Elder, Christopher A Desjardins, Christina A Cuomo, Michalis Barkoulas, Emily R Troemel
Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans. PLoS pathogens 15 (1) (2019)
Sang Hu Kim, Kali R Iyer, Lakhansing Pardeshi, José F Muñoz, Nicole Robbins, Christina A Cuomo, Koon Ho Wong, Leah E Cowen
Genetic Analysis of Candida auris Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance. mBio 10 (1) (2019)
Zachary Schultzhaus, Christina A Cuomo, Zheng Wang
Genome Sequence of the Black Yeast Exophiala lecanii-corni. Microbiology resource announcements 8 (10) (2019)
David A Baltrus, Christina A Cuomo, John J Dennehy, Julie C Dunning Hotopp, Julia A Maresca, Irene L G Newton, David A Rasko, Antonis Rokas, Simon Roux, Jason E Stajich
Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity. Microbiology resource announcements 8 (36) (2019)
Jose F Muñoz, Toni Marie Delorey, Christopher B Ford, Bi Yu Li, Dawn A Thompson, Reeta P Rao, Christina A Cuomo
Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans. Nature communications 10 (1) (2019)
Sang Hu Kim, Kali R Iyer, Lakhansing Pardeshi, José F Muñoz, Nicole Robbins, Christina A Cuomo, Koon Ho Wong, Leah E Cowen
Erratum for Kim et al., "Genetic Analysis of Candida auris Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance". mBio 10 (2) (2019)
Andrew Ryan Passer, Marco A Coelho, Robert Blake Billmyre, Minou Nowrousian, Moritz Mittelbach, Andrey M Yurkov, Anna Floyd Averette, Christina A Cuomo, Sheng Sun, Joseph Heitman
Genetic and Genomic Analyses Reveal Boundaries between Species Closely Related to Cryptococcus Pathogens. mBio 10 (3) (2019)
Georges Ambaraghassi, Philippe J Dufresne, Simon F Dufresne, Émilie Vallières, Jose F Muñoz, Christina A Cuomo, Elizabeth L Berkow, Shawn R Lockhart, Me-Linh Luong
Identification of Candida auris by Use of the Updated Vitek 2 Yeast Identification System, Version 8.01: a Multilaboratory Evaluation Study. Journal of clinical microbiology 57 (11) (2019)
Christina A Cuomo, Saranna Fanning, Sharvari Gujja, Qiandong Zeng, Julian R Naglik, Scott G Filler, Aaron P Mitchell
Genome Sequence for Candida albicans Clinical Oral Isolate 529L. Microbiology resource announcements 8 (25) (2019)
Kenya E Fernandes, Adam Brockway, Miriam Haverkamp, Christina A Cuomo, Floris van Ogtrop, John R Perfect, Dee A Carter
Phenotypic Variability Correlates with Clinical Outcome in Cryptococcus Isolates Obtained from Botswanan HIV/AIDS Patients. mBio 9 (5) (2018)
Christopher A Desjardins, Charles Giamberardino, Sean M Sykes, Chen-Hsin Yu, Jennifer L Tenor, Yuan Chen, Timothy Yang, Alexander M Jones, Sheng Sun, Miriam R Haverkamp, Joseph Heitman, Anastasia P Litvintseva, John R Perfect, Christina A Cuomo
Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans. Genome research 27 (7) (2018)
Rhys A Farrer, Christopher B Ford, Johanna L Rhodes, Toni Delorey, Robin C May, Matthew C Fisher, Elaine Cloutman-Green, Francois Balloux, Christina A Cuomo
Transcriptional Heterogeneity of Cryptococcus gattii VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways. mSphere 3 (5) (2018)
Vikas Yadav, Sheng Sun, R Blake Billmyre, Bhagya C Thimmappa, Terrance Shea, Robert Lintner, Guus Bakkeren, Christina A Cuomo, Joseph Heitman, Kaustuv Sanyal
RNAi is a critical determinant of centromere evolution in closely related fungi. Proceedings of the National Academy of Sciences of the United States of America 115 (12) (2018)
Jose F Muñoz, Lalitha Gade, Nancy A Chow, Vladimir N Loparev, Phalasy Juieng, Elizabeth L Berkow, Rhys A Farrer, Anastasia P Litvintseva, Christina A Cuomo
Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species. Nature communications 9 (1) (2018)
Poppy C S Sephton-Clark, Jose F Muñoz, Elizabeth R Ballou, Christina A Cuomo, Kerstin Voelz
Pathways of Pathogenicity: Transcriptional Stages of Germination in the Fatal Fungal Pathogen Rhizopus delemar. mSphere 3 (5) (2018)
Benjamin Hommel, Liliane Mukaremera, Radamés J B Cordero, Carolina Coelho, Christopher A Desjardins, Aude Sturny-Leclère, Guilhem Janbon, John R Perfect, James A Fraser, Arturo Casadevall, Christina A Cuomo, Françoise Dromer, Kirsten Nielsen, Alexandra Serris
Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators. PLoS pathogens 14 (5) (2018)
Jose F Muñoz, Juan G McEwen, Oliver K Clay, Christina A Cuomo
Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi. Scientific reports 8 (1) (2018)
Ousmane H Cisse, Liang Ma, Da Wei Huang, Pavel P Khil, John P Dekker, Geetha Kutty, Lisa Bishop, Yueqin Liu, Xilong Deng, Philippe Marcel Hauser, Marco Pagni, Vanessa Hirsch, Richard A Lempicki, Jason E Stajich, Christina A Cuomo, Joseph A Kovacs
Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen Pneumocystis. mBio 9 (3) (2018)
Su San Toh, Zehua Chen, Eric C Rouchka, David J Schultz, Christina A Cuomo, Michael H Perlin
Pas de deux: An Intricate Dance of Anther Smut and Its Host. G3 (Bethesda, Md.) 8 (2) (2018)
Iuliana V Ene, Rhys A Farrer, Matthew P Hirakawa, Kennedy Agwamba, Christina A Cuomo, Richard J Bennett
Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen. Proceedings of the National Academy of Sciences of the United States of America 115 (37) (2018)
Gabriela Felix Persinoti, Diego A Martinez, Wenjun Li, Aylin Döğen, R Blake Billmyre, Anna Averette, Jonathan M Goldberg, Terrance Shea, Sarah Young, Qiandong Zeng, Brian G Oliver, Richard Barton, Banu Metin, Süleyha Hilmioğlu-Polat, Macit Ilkit, Yvonne Gräser, Nilce Maria Martinez-Rossi, Theodore C White, Joseph Heitman, Christina A Cuomo
Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum. Genetics 208 (4) (2018)
Leandro Ferreira Moreno, Abdalla A O Ahmed, Balázs Brankovics, Christina A Cuomo, Steph B J Menken, Saad J Taj-Aldeen, Hani Faidah, J Benjamin Stielow, Marcus de M Teixeira, Francesc Xavier Prenafeta-Boldú, Vania A Vicente, Sybren de Hoog
Genomic Understanding of an Infectious Brain Disease from the Desert. G3 (Bethesda, Md.) 8 (3) (2018)
Rhys A Farrer, Kerstin Voelz, Daniel A Henk, Simon A Johnston, Matthew C Fisher, Robin C May, Christina A Cuomo
Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 371 (1709) (2017)
Christina A Cuomo, Terrance Shea, Bo Yang, Reeta Rao, Anja Forche
Whole Genome Sequence of the Heterozygous Clinical Isolate Candida krusei 81-B-5. G3 (Bethesda, Md.) 7 (9) (2017)
Johanna L Rhodes, Christopher A Desjardins, Sean M Sykes, Mathew A Beale, Mathieu Vanhove, Sharadha Sakthikumar, Yuan Chen, Sharvari Gujja, Sakina Saif, Anuradha Chowdhary, Daniel John Lawson, Vinicius Ponzio, Arnaldo Lopes Colombo, Wieland Meyer, David M Engelthaler, Ferry Hagen, Maria Teresa Illnait-Zaragozi, Alexandra Serris, Jo-Marie Vreulink, Joseph Heitman, John R Perfect, Anastasia P Litvintseva, Tihana Bicanic, Thomas S Harrison, Matthew C Fisher, Christina A Cuomo
Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level. Genetics 207 (1) (2017)
Christina A Cuomo, Guus Bakkeren, Hala Badr Khalil, Vinay Panwar, David Joly, Rob Linning, Sharadha Sakthikumar, Xiao Song, Xian Adiconis, Lin Fan, Jonathan M Goldberg, Joshua Z Levin, Sarah Young, Qiandong Zeng, Yehoshua Anikster, Myron Bruce, Meinan Wang, Chuntao Yin, Brent McCallum, Les J Szabo, Scot Hulbert, Xianming Chen, John P Fellers
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci. G3 (Bethesda, Md.) 7 (2) (2017)
Karolina Dukik, Jose F Muñoz, Yanping Jiang, Peiying Feng, Lynne Sigler, J Benjamin Stielow, Joanna Freeke, Azadeh Jamalian, Bert Gerrits van den Ende, Juan G McEwen, Oliver K Clay, Ilan S Schwartz, Nelesh P Govender, Tsidiso G Maphanga, Christina A Cuomo, Leandro F Moreno, Chris Kenyon, Andrew M Borman, Sybren de Hoog
Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales). Mycoses 60 (5) (2017)
Kyung J Kwon-Chung, John E Bennett, Brian L Wickes, Wieland Meyer, Christina A Cuomo, Kurt R Wollenburg, Tihana A Bicanic, Elizabeth Castañeda, Yun C Chang, Jianghan Chen, Massimo Cogliati, Françoise Dromer, David Ellis, Scott G Filler, Matthew C Fisher, Thomas S Harrison, Steven M Holland, Shigeru Kohno, James W Kronstad, Marcia Lazera, Stuart M Levitz, Michail S Lionakis, Robin C May, Popchai Ngamskulrongroj, Peter G Pappas, John R Perfect, Volker Rickerts, Tania C Sorrell, Thomas J Walsh, Peter R Williamson, Jian-Ping Xu, Adrian M Zelazny, Arturo Casadevall
The Case for Adopting the "Species Complex" Nomenclature for the Etiologic Agents of Cryptococcosis. mSphere 2 (1) (2017)
Yuan Chen, Rhys A Farrer, Charles Giamberardino, Sharadha Sakthikumar, Alexander Jones, Timothy Yang, Jennifer L Tenor, Omar Wagih, Marelize Van Wyk, Nelesh P Govender, Thomas G Mitchell, Anastasia P Litvintseva, Christina A Cuomo, John R Perfect
Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii. mBio 8 (2) (2017)
Rhys A Farrer, An Martel, Elin Verbrugghe, Amr Abouelleil, Richard Ducatelle, Joyce E Longcore, Timothy Y James, Frank Pasmans, Matthew C Fisher, Christina A Cuomo
Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi. Nature communications 8 (2017)
Matthew Z Anderson, Allison M Porman, Na Wang, Eugenio Mancera, Denis Huang, Christina A Cuomo, Richard J Bennett
A Multistate Toggle Switch Defines Fungal Cell Fates and Is Regulated by Synergistic Genetic Cues. PLoS genetics 12 (10) (2016)
Carsten Russ, B Franz Lang, Zehua Chen, Sharvari Gujja, Terrance Shea, Qiandong Zeng, Sarah Young, Christina A Cuomo, Chad Nusbaum
Genome Sequence of Spizellomyces punctatus. Genome announcements 4 (4) (2016)
Michelle D Leach, Rhys A Farrer, Kaeling Tan, Zhengqiang Miao, Louise A Walker, Christina A Cuomo, Robert T Wheeler, Alistair J P Brown, Koon Ho Wong, Leah E Cowen
Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans. Nature communications 7 (2016)
José F Muñoz, Rhys A Farrer, Christopher A Desjardins, Juan E Gallo, Sean Sykes, Sharadha Sakthikumar, Elizabeth Misas, Emily A Whiston, Eduardo Bagagli, Celia M A Soares, Marcus de M Teixeira, John W Taylor, Oliver K Clay, Juan G McEwen, Christina A Cuomo
Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides. mSphere 1 (5) (2016)
Kevin P Drees, Jonathan M Palmer, Robert Sebra, Jeffrey M Lorch, Cynthia Chen, Cheng-Cang Wu, Jin Woo Bok, Nancy P Keller, David S Blehert, Christina A Cuomo, Daniel L Lindner, Jeffrey T Foster
Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome. Genome announcements 4 (3) (2016)
Liang Ma, Zehua Chen, Da Wei Huang, Geetha Kutty, Mayumi Ishihara, Honghui Wang, Amr Abouelleil, Lisa Bishop, Emma Davey, Rebecca Deng, Xilong Deng, Lin Fan, Giovanna Fantoni, Michael Fitzgerald, Emile Gogineni, Jonathan M Goldberg, Grace Handley, Xiaojun Hu, Charles Huber, Xiaoli Jiao, Kristine Jones, Joshua Z Levin, Yueqin Liu, Pendexter Macdonald, Alexandre Melnikov, Castle Raley, Monica Sassi, Brad T Sherman, Xiaohong Song, Sean Sykes, Bao Tran, Laura Walsh, Yun Xia, Jun Yang, Sarah Young, Qiandong Zeng, Xin Zheng, Robert Stephens, Chad Nusbaum, Bruce W Birren, Parastoo Azadi, Richard A Lempicki, Christina A Cuomo, Joseph A Kovacs
Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts. Nature communications 7 (2016)
Rhys A Farrer, Christopher A Desjardins, Sharadha Sakthikumar, Sharvari Gujja, Sakina Saif, Qiandong Zeng, Yuan Chen, Kerstin Voelz, Joseph Heitman, Robin C May, Matthew C Fisher, Christina A Cuomo
Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii. mBio 6 (5) (2015)

Christina A Cuomo.css-eqlu8i{font-size:small;padding-left:4px;} (Christina Cuomo)

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Christina A Cuomo (Christina Cuomo)