Magda Bienko

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 26

Top Venues

Nature communications

Nature methods

Nature biotechnology

Nature protocols

Karolinska Institutet / Science for Life Laboratory

Uniwersytet Jagiellonski w Krakowie (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Karolinska Institutet / Science for Life Laboratory Jan 01 2015

Sweden

Assistant Professor :: Medical Biochemistry and Biophysics

Hubrecht Institute Apr 01 2014

Netherlands

Postdoctoral Associate

Hubrecht Institute Oct 01 2013 - Mar 31 2014

Netherlands

HFSP Postdoctoral Fellow

Massachusetts Institute of Technology Apr 01 2011 - Oct 01 2013

United States

HFSP Postdoctoral Fellow :: Biology / Physics

Goethe-Universitat Frankfurt am Main Sep 01 2005 - Dec 31 2010

Germany

PhD studies :: Biochemistry II

Education History

Uniwersytet Jagiellonski w Krakowie Sep 01 2000 - Jun 20 2005

Poland

MSC :: Biotechnology

Publications

Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods (2024)
Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Enrico Berrino, Sara E Bellomo, Gabriel Mello da Cunha Longo, Michael Ratz, Niklas Schultz, Firas Tarish, Peng Su, Bo Han, Wanzhong Wang, Sofia Onorato, Dora Grassini, Roberto Ballarino, Silvia Giordano, Qifeng Yang, Anna Sapino, Jonas Frisén, Kanar Alkass, Henrik Druid, Vassilis Roukos, Thomas Helleday, Caterina Marchiò, Magda Bienko, Nicola Crosetto
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Enrico Berrino, Sara E Bellomo, Gabriel Mello da Cunha Longo, Michael Ratz, Niklas Schultz, Firas Tarish, Peng Su, Bo Han, Wanzhong Wang, Sofia Onorato, Dora Grassini, Roberto Ballarino, Silvia Giordano, Qifeng Yang, Anna Sapino, Jonas Frisén, Kanar Alkass, Henrik Druid, Vassilis Roukos, Thomas Helleday, Caterina Marchiò, Magda Bienko, Nicola Crosetto
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Enrico Berrino, Sara E Bellomo, Gabriel Mello da Cunha Longo, Michael Ratz, Niklas Schultz, Firas Tarish, Peng Su, Bo Han, Wanzhong Wang, Sofia Onorato, Dora Grassini, Roberto Ballarino, Silvia Giordano, Qifeng Yang, Anna Sapino, Jonas Frisén, Kanar Alkass, Henrik Druid, Vassilis Roukos, Thomas Helleday, Caterina Marchiò, Magda Bienko, Nicola Crosetto
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue. Nature communications 15 (1) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Magda Bienko
How Hi-C ignited the era of 3D genome biology. Nature reviews. Genetics (2023)
Francesca Mastropasqua, Marika Oksanen, Cristina Soldini, Shemim Alatar, Abishek Arora, Roberto Ballarino, Maya Molinari, Federico Agostini, Axel Poulet, Michelle Watts, Ielyzaveta Rabkina, Martin Becker, Danyang Li, Britt-Marie Anderlid, Vladislav Ruchkin, Karl Lundin Remnelius, Mohsen Moslem, Yannick Jacob, Anna Falk, Nicola Crosetto, Magda Bienko, Emanuela Santini, Anders Borgkvist, Sven Bölte, Kristiina Tammimies
Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis. Biology open 12 (10) (2023)
Ana Mota, Szymon Berezicki, Erik Wernersson, Luuk Harbers, Xiaoze Li-Wang, Katarina Gradin, Christiane Peuckert, Nicola Crosetto, Magda Bienko
FRET-FISH probes chromatin compaction at individual genomic loci in single cells. Nature communications 13 (1) (2022)
Michele Simonetti, Ning Zhang, Luuk Harbers, Maria Grazia Milia, Silvia Brossa, Thi Thu Huong Nguyen, Francesco Cerutti, Enrico Berrino, Anna Sapino, Magda Bienko, Antonino Sottile, Valeria Ghisetti, Nicola Crosetto
COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance. Nature communications 12 (1) (2021)
Britta A M Bouwman, Federico Agostini, Silvano Garnerone, Giuseppe Petrosino, Henrike Johanna Gothe, Sergi Sayols, Andreas E Moor, Shalev Itzkovitz, Magda Bienko, Vassilis Roukos, Nicola Crosetto
Genome-wide detection of DNA double-strand breaks by in-suspension BLISS. Nature protocols 15 (12) (2020)
Gabriele Girelli, Joaquin Custodio, Tomasz Kallas, Federico Agostini, Erik Wernersson, Bastiaan Spanjaard, Ana Mota, Solrun Kolbeinsdottir, Eleni Gelali, Nicola Crosetto, Magda Bienko
GPSeq reveals the radial organization of chromatin in the cell nucleus. Nature biotechnology 38 (10) (2020)
Marcel Tarbier, Sebastian D Mackowiak, João Frade, Silvina Catuara-Solarz, Inna Biryukova, Eleni Gelali, Diego Bárcena Menéndez, Luis Zapata, Stephan Ossowski, Magda Bienko, Caroline J Gallant, Marc R Friedländer
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells. Nature communications 11 (1) (2020)
Xiaolu Zhang, Silvano Garnerone, Michele Simonetti, Luuk Harbers, Marcin Nicoś, Reza Mirzazadeh, Tiziana Venesio, Anna Sapino, Johan Hartman, Caterina Marchiò, Magda Bienko, Nicola Crosetto
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples. Nature communications 10 (1) (2019)
Eleni Gelali, Gabriele Girelli, Masahiro Matsumoto, Erik Wernersson, Joaquin Custodio, Ana Mota, Maud Schweitzer, Katalin Ferenc, Xinge Li, Reza Mirzazadeh, Federico Agostini, John P Schell, Fredrik Lanner, Nicola Crosetto, Magda Bienko
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture. Nature communications 10 (1) (2019)
Chenglin Wu, Michele Simonetti, Carla Rossell, Marco Mignardi, Reza Mirzazadeh, Laura Annaratone, Caterina Marchiò, Anna Sapino, Magda Bienko, Nicola Crosetto, Mats Nilsson
RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples. Communications biology 1 (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Magda Bienko