Nicola Crosetto

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 32

Top Topics

Early Breast Cancer

Top Venues

Nature communications

Scientific data

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Laura Curti, Sara Rohban, Nicola Bianchi, Ottavio Croci, Adrian Andronache, Sara Barozzi, Michela Mattioli, Fernanda Ricci, Elena Pastori, Silvia Sberna, Simone Bellotti, Anna Accialini, Roberto Ballarino, Nicola Crosetto, Mark Wade, Dario Parazzoli, Stefano Campaner
CDK12 controls transcription at damaged genes and prevents MYC-induced transcription-replication conflicts. Nature communications 15 (1) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods (2024)
Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Enrico Berrino, Sara E Bellomo, Gabriel Mello da Cunha Longo, Michael Ratz, Niklas Schultz, Firas Tarish, Peng Su, Bo Han, Wanzhong Wang, Sofia Onorato, Dora Grassini, Roberto Ballarino, Silvia Giordano, Qifeng Yang, Anna Sapino, Jonas Frisén, Kanar Alkass, Henrik Druid, Vassilis Roukos, Thomas Helleday, Caterina Marchiò, Magda Bienko, Nicola Crosetto
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Laura Curti, Sara Rohban, Nicola Bianchi, Ottavio Croci, Adrian Andronache, Sara Barozzi, Michela Mattioli, Fernanda Ricci, Elena Pastori, Silvia Sberna, Simone Bellotti, Anna Accialini, Roberto Ballarino, Nicola Crosetto, Mark Wade, Dario Parazzoli, Stefano Campaner
CDK12 controls transcription at damaged genes and prevents MYC-induced transcription-replication conflicts. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Laura Curti, Sara Rohban, Nicola Bianchi, Ottavio Croci, Adrian Andronache, Sara Barozzi, Michela Mattioli, Fernanda Ricci, Elena Pastori, Silvia Sberna, Simone Bellotti, Anna Accialini, Roberto Ballarino, Nicola Crosetto, Mark Wade, Dario Parazzoli, Stefano Campaner
CDK12 controls transcription at damaged genes and prevents MYC-induced transcription-replication conflicts. Nature communications 15 (1) (2024)
Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Enrico Berrino, Sara E Bellomo, Gabriel Mello da Cunha Longo, Michael Ratz, Niklas Schultz, Firas Tarish, Peng Su, Bo Han, Wanzhong Wang, Sofia Onorato, Dora Grassini, Roberto Ballarino, Silvia Giordano, Qifeng Yang, Anna Sapino, Jonas Frisén, Kanar Alkass, Henrik Druid, Vassilis Roukos, Thomas Helleday, Caterina Marchiò, Magda Bienko, Nicola Crosetto
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Enrico Berrino, Sara E Bellomo, Gabriel Mello da Cunha Longo, Michael Ratz, Niklas Schultz, Firas Tarish, Peng Su, Bo Han, Wanzhong Wang, Sofia Onorato, Dora Grassini, Roberto Ballarino, Silvia Giordano, Qifeng Yang, Anna Sapino, Jonas Frisén, Kanar Alkass, Henrik Druid, Vassilis Roukos, Thomas Helleday, Caterina Marchiò, Magda Bienko, Nicola Crosetto
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue. Nature communications 15 (1) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Laura Curti, Sara Rohban, Nicola Bianchi, Ottavio Croci, Adrian Andronache, Sara Barozzi, Michela Mattioli, Fernanda Ricci, Elena Pastori, Silvia Sberna, Simone Bellotti, Anna Accialini, Roberto Ballarino, Nicola Crosetto, Mark Wade, Dario Parazzoli, Stefano Campaner
CDK12 controls transcription at damaged genes and prevents MYC-induced transcription-replication conflicts. Nature communications 15 (1) (2024)
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L Georgiadis, Britta A M Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, Nicola Crosetto
Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Nature communications 15 (1) (2024)
Francesca Mastropasqua, Marika Oksanen, Cristina Soldini, Shemim Alatar, Abishek Arora, Roberto Ballarino, Maya Molinari, Federico Agostini, Axel Poulet, Michelle Watts, Ielyzaveta Rabkina, Martin Becker, Danyang Li, Britt-Marie Anderlid, Vladislav Ruchkin, Karl Lundin Remnelius, Mohsen Moslem, Yannick Jacob, Anna Falk, Nicola Crosetto, Magda Bienko, Emanuela Santini, Anders Borgkvist, Sven Bölte, Kristiina Tammimies
Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis. Biology open 12 (10) (2023)
Carlos Jiménez, Nicola Crosetto
Discovering CRISPR-Cas off-target breaks. Nature methods (2023)
Ana Mota, Maud Schweitzer, Erik Wernersson, Nicola Crosetto, Magda Bienko
Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH. Scientific data 9 (1) (2022)
Roberto Ballarino, Britta A M Bouwman, Federico Agostini, Luuk Harbers, Constantin Diekmann, Erik Wernersson, Magda Bienko, Nicola Crosetto
An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination. Scientific data 9 (1) (2022)
Ana Mota, Szymon Berezicki, Erik Wernersson, Luuk Harbers, Xiaoze Li-Wang, Katarina Gradin, Christiane Peuckert, Nicola Crosetto, Magda Bienko
FRET-FISH probes chromatin compaction at individual genomic loci in single cells. Nature communications 13 (1) (2022)
Michele Simonetti, Ning Zhang, Luuk Harbers, Maria Grazia Milia, Silvia Brossa, Thi Thu Huong Nguyen, Francesco Cerutti, Enrico Berrino, Anna Sapino, Magda Bienko, Antonino Sottile, Valeria Ghisetti, Nicola Crosetto
COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance. Nature communications 12 (1) (2021)
Ioannis Zerdes, Michele Simonetti, Alexios Matikas, Luuk Harbers, Balazs Acs, Ceren Boyaci, Ning Zhang, Dimitrios Salgkamis, Susanne Agartz, Pablo Moreno-Ruiz, Yalai Bai, David L Rimm, Johan Hartman, Artur Mezheyeuski, Jonas Bergh, Nicola Crosetto, Theodoros Foukakis
Interplay between copy number alterations and immune profiles in the early breast cancer Scandinavian Breast Group 2004-1 randomized phase II trial: results from a feasibility study. NPJ breast cancer 7 (1) (2021)
Britta A M Bouwman, Federico Agostini, Silvano Garnerone, Giuseppe Petrosino, Henrike Johanna Gothe, Sergi Sayols, Andreas E Moor, Shalev Itzkovitz, Magda Bienko, Vassilis Roukos, Nicola Crosetto
Genome-wide detection of DNA double-strand breaks by in-suspension BLISS. Nature protocols 15 (12) (2020)
Gabriele Girelli, Joaquin Custodio, Tomasz Kallas, Federico Agostini, Erik Wernersson, Bastiaan Spanjaard, Ana Mota, Solrun Kolbeinsdottir, Eleni Gelali, Nicola Crosetto, Magda Bienko
GPSeq reveals the radial organization of chromatin in the cell nucleus. Nature biotechnology 38 (10) (2020)
Xiaolu Zhang, Silvano Garnerone, Michele Simonetti, Luuk Harbers, Marcin Nicoś, Reza Mirzazadeh, Tiziana Venesio, Anna Sapino, Johan Hartman, Caterina Marchiò, Magda Bienko, Nicola Crosetto
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples. Nature communications 10 (1) (2019)
Gaetano Ivan Dellino, Fernando Palluzzi, Andrea Maria Chiariello, Rossana Piccioni, Simona Bianco, Laura Furia, Giulia De Conti, Britta A M Bouwman, Giorgio E M Melloni, Davide Guido, Luciano Giacò, Lucilla Luzi, Davide Cittaro, Mario Faretta, Mario Nicodemi, Nicola Crosetto, Pier Giuseppe Pelicci
Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations. Nature genetics 51 (6) (2019)
Eleni Gelali, Gabriele Girelli, Masahiro Matsumoto, Erik Wernersson, Joaquin Custodio, Ana Mota, Maud Schweitzer, Katalin Ferenc, Xinge Li, Reza Mirzazadeh, Federico Agostini, John P Schell, Fredrik Lanner, Nicola Crosetto, Magda Bienko
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture. Nature communications 10 (1) (2019)