Mats Nilsson (M Nilsson)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 43

Top Venues

Nature neuroscience

Nature communications

Nature cell biology

Development (Cambridge, England)

Stockholms Universitet

Uppsala Universitet (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stockholms Universitet Jul 01 2012

Sweden

Professor :: Biochemistry and Biophysics

Education History

Uppsala Universitet Sep 01 1993 - May 08 1998

Sweden

PHD :: Medical Genetics

Publications

Leonardo D Garma, Lisbeth Harder, Juan M Barba-Reyes, Sergio Marco Salas, Mónica Díez-Salguero, Mats Nilsson, Alberto Serrano-Pozo, Bradley T Hyman, Ana Belén Muñoz-Manchado
Interneuron diversity in the human dorsal striatum. Nature communications 15 (1) (2024)
Leonardo D Garma, Lisbeth Harder, Juan M Barba-Reyes, Sergio Marco Salas, Mónica Díez-Salguero, Mats Nilsson, Alberto Serrano-Pozo, Bradley T Hyman, Ana Belén Muñoz-Manchado
Interneuron diversity in the human dorsal striatum. Nature communications 15 (1) (2024)
Joachim De Jonghe, James W Opzoomer, Amaia Vilas-Zornoza, Peter Crane, Benedikt S Nilges, Marco Vicari, Hower Lee, David Lara-Astiaso, Torsten Gross, Jörg Morf, Kim Schneider, Juliana Cudini, Lorenzo Ramos-Mucci, Dylan Mooijman, Katarína Tiklová, Sergio Marco Salas, Christoffer Mattsson Langseth, Nachiket D Kashikar, Charles E S Roberts, null null, Joakim Lundeberg, Mats Nilsson, Alex K Shalek, Adam P Cribbs, Jake P Taylor-King
A community effort to track commercial single-cell and spatial 'omic technologies and business trends. Nature biotechnology 42 (7) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods (2024)
Hower Lee, Christoffer Mattsson Langseth, Sergio Marco Salas, Sanem Sariyar, Andreas Metousis, Eneritz Rueda-Alaña, Christina Bekiari, Emma Lundberg, Fernando Garcı A-Moreno, Marco Grillo, Mats Nilsson
Open-source, high-throughput targeted in situ transcriptomics for developmental and tissue biology. Development (Cambridge, England) 151 (16) (2024)
Leonardo D Garma, Lisbeth Harder, Juan M Barba-Reyes, Sergio Marco Salas, Mónica Díez-Salguero, Mats Nilsson, Alberto Serrano-Pozo, Bradley T Hyman, Ana Belén Muñoz-Manchado
Interneuron diversity in the human dorsal striatum. Nature communications 15 (1) (2024)
Hower Lee, Christoffer Mattsson Langseth, Sergio Marco Salas, Sanem Sariyar, Andreas Metousis, Eneritz Rueda-Alaña, Christina Bekiari, Emma Lundberg, Fernando Garcı A-Moreno, Marco Grillo, Mats Nilsson
Open-source, high-throughput targeted in-situ transcriptomics for developmental and tissue biology. Development (Cambridge, England) (2024)
Hower Lee, Christoffer Mattsson Langseth, Sergio Marco Salas, Sanem Sariyar, Andreas Metousis, Eneritz Rueda-Alaña, Christina Bekiari, Emma Lundberg, Fernando Garcı A-Moreno, Marco Grillo, Mats Nilsson
Open-source, high-throughput targeted in situ transcriptomics for developmental and tissue biology. Development (Cambridge, England) 151 (16) (2024)
Axel Andersson, Maria Escriva Conde, Olga Surova, Peter B Vermeulen, Carolina Wählby, Mats Nilsson, Hanna Nyström
Spatial transcriptome mapping of the desmoplastic growth pattern of colorectal liver metastases by in situ sequencing reveals a biologically relevant zonation of the desmoplastic rim. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Leonardo D Garma, Lisbeth Harder, Juan M Barba-Reyes, Sergio Marco Salas, Mónica Díez-Salguero, Mats Nilsson, Alberto Serrano-Pozo, Bradley T Hyman, Ana Belén Muñoz-Manchado
Interneuron diversity in the human dorsal striatum. Nature communications 15 (1) (2024)
Joachim De Jonghe, James W Opzoomer, Amaia Vilas-Zornoza, Peter Crane, Benedikt S Nilges, Marco Vicari, Hower Lee, David Lara-Astiaso, Torsten Gross, Jörg Morf, Kim Schneider, Juliana Cudini, Lorenzo Ramos-Mucci, Dylan Mooijman, Katarína Tiklová, Sergio Marco Salas, Christoffer Mattsson Langseth, Nachiket D Kashikar, Charles E S Roberts, null null, Joakim Lundeberg, Mats Nilsson, Alex K Shalek, Adam P Cribbs, Jake P Taylor-King
A community effort to track commercial single-cell and spatial 'omic technologies and business trends. Nature biotechnology 42 (7) (2024)
Eneritz Rueda-Alaña, Marco Grillo, Enrique Vázquez, Sergio Marco Salas, Rodrigo Senovilla-Ganzo, Laura Escobar, Ana Quintas, Alberto Benguria, Ana María Aransay, Nora Bengoa-Vergniory, Ana Dopazo, Juan Manuel Encinas-Pérez, Mats Nilsson, Fernando Garcı A-Moreno
BirthSeq, a new method to isolate and analyze dated cells in different vertebrates. Development (Cambridge, England) 151 (13) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Eneritz Rueda-Alaña, Marco Grillo, Enrique Vázquez, Sergio Marco Salas, Rodrigo Senovilla-Ganzo, Laura Escobar, Ana Quintas, Alberto Benguria, Ana María Aransay, Nora Bengoa-Vergniory, Ana Dopazo, Juan Manuel Encinas-Pérez, Mats Nilsson, Fernando Garcı A-Moreno
BirthSeq, a new method to isolate and analyze dated cells in different vertebrates. Development (Cambridge, England) (2024)
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Christoffer Mattsson Langseth, Quentin Verron, Huy Q Nguyen, Shyamtanu Chattoraj, Anna Martinez Casals, Hans Blom, Emma Lundberg, Mats Nilsson, Marc A Marti-Renom, Chao-Ting Wu, Nicola Crosetto, Magda Bienko
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images. Nature methods 21 (7) (2024)
Leonardo D Garma, Lisbeth Harder, Juan M Barba-Reyes, Sergio Marco Salas, Mónica Díez-Salguero, Mats Nilsson, Alberto Serrano-Pozo, Bradley T Hyman, Ana Belén Muñoz-Manchado
Interneuron diversity in the human dorsal striatum. Nature communications 15 (1) (2024)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience 26 (5) (2023)
Marco Vicari, Reza Mirzazadeh, Anna Nilsson, Reza Shariatgorji, Patrik Bjärterot, Ludvig Larsson, Hower Lee, Mats Nilsson, Julia Foyer, Markus Ekvall, Paulo Czarnewski, Xiaoqun Zhang, Per Svenningsson, Lukas Käll, Per E Andren, Joakim Lundeberg
Spatial multimodal analysis of transcriptomes and metabolomes in tissues. Nature biotechnology (2023)
Alexandros Sountoulidis, Sergio Marco Salas, Emelie Braun, Christophe Avenel, Joseph Bergenstråhle, Jonas Theelke, Marco Vicari, Paulo Czarnewski, Andreas Liontos, Xesús M Abalo, Žaneta Andrusivová, Reza Mirzazadeh, Michaela Asp, Xiaofei Li, Lijuan Hu, Sanem Sariyar, Anna Martinez Casals, Burcu Ayoglu, Alexandra B Firsova, Jakob Michaëlsson, Emma Lundberg, Carolina Wählby, Erik Sundström, Sten Linnarsson, Joakim Lundeberg, Mats Nilsson, Christos Samakovlis
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung. Nature cell biology 25 (2) (2023)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience 26 (5) (2023)
Alexandros Sountoulidis, Sergio Marco Salas, Emelie Braun, Christophe Avenel, Joseph Bergenstråhle, Jonas Theelke, Marco Vicari, Paulo Czarnewski, Andreas Liontos, Xesús M Abalo, Žaneta Andrusivová, Reza Mirzazadeh, Michaela Asp, Xiaofei Li, Lijuan Hu, Sanem Sariyar, Anna Martinez Casals, Burcu Ayoglu, Alexandra B Firsova, Jakob Michaëlsson, Emma Lundberg, Carolina Wählby, Erik Sundström, Sten Linnarsson, Joakim Lundeberg, Mats Nilsson, Christos Samakovlis
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung. Nature cell biology 25 (2) (2023)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience (2023)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience 26 (5) (2023)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience (2023)
Alexandros Sountoulidis, Sergio Marco Salas, Emelie Braun, Christophe Avenel, Joseph Bergenstråhle, Jonas Theelke, Marco Vicari, Paulo Czarnewski, Andreas Liontos, Xesús M Abalo, Žaneta Andrusivová, Reza Mirzazadeh, Michaela Asp, Xiaofei Li, Lijuan Hu, Sanem Sariyar, Anna Martinez Casals, Burcu Ayoglu, Alexandra B Firsova, Jakob Michaëlsson, Emma Lundberg, Carolina Wählby, Erik Sundström, Sten Linnarsson, Joakim Lundeberg, Mats Nilsson, Christos Samakovlis
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung. Nature cell biology 25 (2) (2023)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience (2023)
Alexandros Sountoulidis, Sergio Marco Salas, Emelie Braun, Christophe Avenel, Joseph Bergenstråhle, Jonas Theelke, Marco Vicari, Paulo Czarnewski, Andreas Liontos, Xesús M Abalo, Žaneta Andrusivová, Reza Mirzazadeh, Michaela Asp, Xiaofei Li, Lijuan Hu, Sanem Sariyar, Anna Martinez Casals, Burcu Ayoglu, Alexandra B Firsova, Jakob Michaëlsson, Emma Lundberg, Carolina Wählby, Erik Sundström, Sten Linnarsson, Joakim Lundeberg, Mats Nilsson, Christos Samakovlis
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung. Nature cell biology (2023)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience 26 (5) (2023)
Alexandros Sountoulidis, Sergio Marco Salas, Emelie Braun, Christophe Avenel, Joseph Bergenstråhle, Jonas Theelke, Marco Vicari, Paulo Czarnewski, Andreas Liontos, Xesús M Abalo, Žaneta Andrusivová, Reza Mirzazadeh, Michaela Asp, Xiaofei Li, Lijuan Hu, Sanem Sariyar, Anna Martinez Casals, Burcu Ayoglu, Alexandra B Firsova, Jakob Michaëlsson, Emma Lundberg, Carolina Wählby, Erik Sundström, Sten Linnarsson, Joakim Lundeberg, Mats Nilsson, Christos Samakovlis
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung. Nature cell biology 25 (2) (2023)
Xiaofei Li, Zaneta Andrusivova, Paulo Czarnewski, Christoffer Mattsson Langseth, Alma Andersson, Yang Liu, Daniel Gyllborg, Emelie Braun, Ludvig Larsson, Lijuan Hu, Zhanna Alekseenko, Hower Lee, Christophe Avenel, Helena Kopp Kallner, Elisabet Åkesson, Igor Adameyko, Mats Nilsson, Sten Linnarsson, Joakim Lundeberg, Erik Sundström
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin. Nature neuroscience 26 (5) (2023)
Alexandros Sountoulidis, Sergio Marco Salas, Emelie Braun, Christophe Avenel, Joseph Bergenstråhle, Jonas Theelke, Marco Vicari, Paulo Czarnewski, Andreas Liontos, Xesús M Abalo, Žaneta Andrusivová, Reza Mirzazadeh, Michaela Asp, Xiaofei Li, Lijuan Hu, Sanem Sariyar, Anna Martinez Casals, Burcu Ayoglu, Alexandra B Firsova, Jakob Michaëlsson, Emma Lundberg, Carolina Wählby, Erik Sundström, Sten Linnarsson, Joakim Lundeberg, Mats Nilsson, Christos Samakovlis
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung. Nature cell biology 25 (2) (2023)
Sergio Marco Salas, Xiao Yuan, Christer Sylven, Mats Nilsson, Carolina Wählby, Gabriele Partel
De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks. PLoS computational biology 18 (8) (2022)
Artem Lomakin, Jessica Svedlund, Carina Strell, Milana Gataric, Artem Shmatko, Gleb Rukhovich, Jun Sung Park, Young Seok Ju, Stefan C Dentro, Vitalii Kleshchevnikov, Vasyl Vaskivskyi, Tong Li, Omer Ali Bayraktar, Sarah E Pinder, Andrea L Richardson, Sandro Santagata, Peter J Campbell, Hege Russnes, Moritz Gerstung, Mats Nilsson, Lucy R Yates
Spatial genomics maps the structure, nature and evolution of cancer clones. Nature 611 (7936) (2022)
Ilon Liu, Li Jiang, Erik R Samuelsson, Sergio Marco Salas, Alexander Beck, Olivia A Hack, Daeun Jeong, McKenzie L Shaw, Bernhard Englinger, Jenna LaBelle, Hafsa M Mire, Sibylle Madlener, Lisa Mayr, Michael A Quezada, Maria Trissal, Eshini Panditharatna, Kati J Ernst, Jayne Vogelzang, Taylor A Gatesman, Matthew E Halbert, Hana Palova, Petra Pokorna, Jaroslav Sterba, Ondrej Slaby, Rene Geyeregger, Aaron A Diaz, Izac J Findlay, Matthew D Dun, Adam Resnick, Mario L Suvà, David T W Jones, Sameer Agnihotri, Jessica Svedlund, Carl Koschmann, Christine Haberler, Thomas Czech, Irene Slavc, Jennifer A Cotter, Keith L Ligon, Sanda Alexandrescu, W K Alfred Yung, Isabel Arrillaga-Romany, Johannes Gojo, Michelle Monje, Mats Nilsson, Mariella G Filbin
The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. Nature genetics 54 (12) (2022)
Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Mats Nilsson
Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps. BMC bioinformatics 22 (1) (2021)
Ruben R G Soares, Narayanan Madaboosi, Mats Nilsson
Rolling Circle Amplification in Integrated Microsystems: An Uncut Gem toward Massively Multiplexed Pathogen Diagnostics and Genotyping. Accounts of chemical research 54 (21) (2021)
Christoffer Mattsson Langseth, Daniel Gyllborg, Jeremy A Miller, Jennie L Close, Brian R Long, Ed S Lein, Markus M Hilscher, Mats Nilsson
Comprehensive in situ mapping of human cortical transcriptomic cell types. Communications biology 4 (1) (2021)
Muzlifah A Haniffa, Deanne M Taylor, Sten Linnarsson, Bruce J Aronow, Gary D Baider, Roger A Barker, Pablo G Camara, J Gray Camp, Alain Chédotal, Andrew J Copp, Heather C Etchevers, Paolo Giacobini, Berthold Göttgens, Guoji Guo, Ania Hupalowska, Kylie R James, Emily Kirby, Arnold R Kriegstein, Joakim Lundeberg, John C Marioni, Kerstin B Meyer, Kathy K Niakan, Mats Nilsson, Bayanne Olabi, Dana Pe'er, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Rahul Satija, Sarah A Teichmann, Barbara Treutlein, Roser Vento-Tormo, Simone Webb, null null
A roadmap for the Human Developmental Cell Atlas. Nature 597 (7875) (2021)
Gioele La Manno, Kimberly Siletti, Alessandro Furlan, Daniel Gyllborg, Elin Vinsland, Alejandro Mossi Albiach, Christoffer Mattsson Langseth, Irina Khven, Alex R Lederer, Lisa M Dratva, Anna Johnsson, Mats Nilsson, Peter Lönnerberg, Sten Linnarsson
Molecular architecture of the developing mouse brain. Nature 596 (7870) (2021)
Elisa M Floriddia, Tânia Lourenço, Shupei Zhang, David van Bruggen, Markus M Hilscher, Petra Kukanja, João P Gonçalves Dos Santos, Müge Altınkök, Chika Yokota, Enric Llorens-Bobadilla, Sara B Mulinyawe, Mário Grãos, Lu O Sun, Jonas Frisén, Mats Nilsson, Gonçalo Castelo-Branco
Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury. Nature communications 11 (1) (2020)
Xiaoyan Qian, Kenneth D Harris, Thomas Hauling, Dimitris Nicoloutsopoulos, Ana B Muñoz-Manchado, Nathan G Skene, Jens Hjerling Leffler, Mats Nilsson
Probabilistic cell typing enables fine mapping of closely related cell types in situ. Nature methods 17 (1) (2019)
I Hernández-Neuta, F Neumann, J Brightmeyer, T Ba Tis, N Madaboosi, Qingshan Wei, Aydogan Ozcan, Mats Nilsson
Smartphone-based clinical diagnostics: towards democratization of evidence-based health care. Journal of internal medicine 285 (1) (2018)

Mats Nilsson.css-eqlu8i{font-size:small;padding-left:4px;} (M Nilsson)

Publication Activity (10 Years)

Top Topics

Top Venues

Mats Nilsson (M Nilsson)