Marc Baaden (M Baaden)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 33

Top Topics

Single Molecule

Nursing Students

Arabidopsis Thaliana

Molecular Dynamics

Top Venues

Journal of chemical information and modeling

Proceedings of the National Academy of Sciences of the United States of America

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Johanna K S Tiemann, Magdalena Szczuka, Lisa Bouarroudj, Mohamed Oussaren, Steven Garcia, Rebecca J Howard, Lucie Delemotte, Erik Lindahl, Marc Baaden, Kresten Lindorff-Larsen, Matthieu Chavent, Pierre Poulain
MDverse, shedding light on the dark matter of molecular dynamics simulations. eLife 12 (2024)
Marc Baaden
MolPlay: Democratizing Interactive Molecular Simulations and Analyses with a Portable, Turnkey Platform. The journal of physical chemistry. B (2024)
Li-Bo Huang, Fumihiko Mamiya, Marc Baaden, Eiji Yashima, Mihail Barboiu
Self-Assembling Peptide-Appended Metallomacrocycle Pores for Selective Water Translocation. ACS applied materials & interfaces (2023)
Raphaelle Versini, Sujith Sritharan, Burcu Aykac Fas, Thibault Tubiana, Sana Zineb Aimeur, Julien Henri, Marie Erard, Oliver Nüße, Jessica Andreani, Marc Baaden, Patrick Fuchs, Tatiana Galochkina, Alexios Chatzigoulas, Zoe Cournia, Hubert Santuz, Sophie Sacquin-Mora, Antoine Taly
A Perspective on the Prospective Use of AI in Protein Structure Prediction. Journal of chemical information and modeling 64 (1) (2023)
André Lanrezac, Marc Baaden
UNILIPID, a Methodology for Energetically Accurate Prediction of Protein Insertion into Implicit Membranes of Arbitrary Shape. Membranes 13 (3) (2023)
Raphaelle Versini, Sujith Sritharan, Burcu Aykac Fas, Thibault Tubiana, Sana Zineb Aimeur, Julien Henri, Marie Erard, Oliver Nüße, Jessica Andreani, Marc Baaden, Patrick Fuchs, Tatiana Galochkina, Alexios Chatzigoulas, Zoe Cournia, Hubert Santuz, Sophie Sacquin-Mora, Antoine Taly
A Perspective on the Prospective Use of AI in Protein Structure Prediction. Journal of chemical information and modeling (2023)
André Lanrezac, Marc Baaden
UNILIPID, a Methodology for Energetically Accurate Prediction of Protein Insertion into Implicit Membranes of Arbitrary Shape. Membranes 13 (3) (2023)
Johanna K S Tiemann, Magdalena Szczuka, Lisa Bouarroudj, Mohamed Oussaren, Steven Garcia, Rebecca J Howard, Lucie Delemotte, Erik Lindahl, Marc Baaden, Kresten Lindorff-Larsen, Matthieu Chavent, Pierre Poulain
MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations. bioRxiv : the preprint server for biology (2023)
Iuliana M Andrei, Wenzhang Chen, Marc Baaden, Stéphane P Vincent, Mihail Barboiu
Proton- versus Cation-Selective Transport of Saccharide Rim-Appended Pillar[5]arene Artificial Water Channels. Journal of the American Chemical Society (2023)
Johanna K S Tiemann, Magdalena Szczuka, Lisa Bouarroudj, Mohamed Oussaren, Steven Garcia, Rebecca J Howard, Lucie Delemotte, Erik Lindahl, Marc Baaden, Kresten Lindorff-Larsen, Matthieu Chavent, Pierre Poulain
MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations. bioRxiv : the preprint server for biology (2023)
Raphaelle Versini, Sujith Sritharan, Burcu Aykac Fas, Thibault Tubiana, Sana Zineb Aimeur, Julien Henri, Marie Erard, Oliver Nüße, Jessica Andreani, Marc Baaden, Patrick Fuchs, Tatiana Galochkina, Alexios Chatzigoulas, Zoe Cournia, Hubert Santuz, Sophie Sacquin-Mora, Antoine Taly
A Perspective on the Prospective Use of AI in Protein Structure Prediction. Journal of chemical information and modeling 64 (1) (2023)
Raphaelle Versini, Sujith Sritharan, Burcu Aykac Fas, Thibault Tubiana, Sana Zineb Aimeur, Julien Henri, Marie Erard, Oliver Nüße, Jessica Andreani, Marc Baaden, Patrick Fuchs, Tatiana Galochkina, Alexios Chatzigoulas, Zoe Cournia, Hubert Santuz, Sophie Sacquin-Mora, Antoine Taly
A Perspective on the Prospective Use of AI in Protein Structure Prediction. Journal of chemical information and modeling 64 (1) (2023)
André Lanrezac, Marc Baaden
UNILIPID, a Methodology for Energetically Accurate Prediction of Protein Insertion into Implicit Membranes of Arbitrary Shape. Membranes 13 (3) (2023)
Nicolas Bourassin, Florent Barbault, Marc Baaden, Sophie Sacquin-Mora
Between Two Walls: Modeling the Adsorption Behavior of β-Glucosidase A on Bare and SAM-Functionalized Gold Surfaces. Langmuir : the ACS journal of surfaces and colloids 38 (4) (2022)
Davide Spalvieri, Anne-Marine Mauviel, Matthieu Lambert, Nicolas Ferey, Sophie Sacquin-Mora, Matthieu Chavent, Marc Baaden
Design - a new way to look at old molecules. Journal of integrative bioinformatics 19 (2) (2022)
Björn Sommer, Daisuke Inoue, Marc Baaden
Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design. Journal of integrative bioinformatics 19 (2) (2022)
Arthur Hardiagon, Marc Baaden, Fabio Sterpone
Artificial Water Channels Form Precursors to Sponge-Like Aggregates in Water-Ethanol Mixtures. The journal of physical chemistry. A 126 (38) (2022)
Xavier Martinez, Marc Baaden
UnityMol prototype for FAIR sharing of molecular-visualization experiences: from pictures in the cloud to collaborative virtual reality exploration in immersive 3D environments. Acta crystallographica. Section D, Structural biology 77 (Pt 6) (2021)
Li-Bo Huang, Arthur Hardiagon, Istvan Kocsis, Cristina-Alexandra Jegu, Mihai Deleanu, Arnaud Gilles, Arie Van der Lee, Fabio Sterpone, Marc Baaden, Mihail Barboiu
Hydroxy Channels-Adaptive Pathways for Selective Water Cluster Permeation. Journal of the American Chemical Society 143 (11) (2021)
Arthur Hardiagon, Samuel Murail, Li-Bo Huang, Arie van der Lee, Fabio Sterpone, Mihail Barboiu, Marc Baaden
Molecular dynamics simulations reveal statistics and microscopic mechanisms of water permeation in membrane-embedded artificial water channel nanoconstructs. The Journal of chemical physics 154 (18) (2021)
Nuria López, Luigi Del Debbio, Marc Baaden, Matej Praprotnik, Laura Grigori, Catarina Simões, Serge Bogaerts, Florian Berberich, Thomas Lippert, Janne Ignatius, Philippe Lavocat, Oriol Pineda, Maria Grazia Giuffreda, Sergi Girona, Dieter Kranzlmüller, Michael M Resch, Gabriella Scipione, Thomas Schulthess
Lessons learned from urgent computing in Europe: Tackling the COVID-19 pandemic. Proceedings of the National Academy of Sciences of the United States of America 118 (46) (2021)
Dmytro Strilets, Shixin Fa, Arthur Hardiagon, Marc Baaden, Tomoki Ogoshi, Mihail Barboiu
Biomimetic Approach for Highly Selective Artificial Water Channels Based on Tubular Pillar[5]arene Dimers. Angewandte Chemie (International ed. in English) 59 (51) (2020)
Nicolas Bourassin, Marc Baaden, Elisabeth Lojou, Sophie Sacquin-Mora
Implicit Modeling of the Impact of Adsorption on Solid Surfaces for Protein Mechanics and Activity with a Coarse-Grained Representation. The journal of physical chemistry. B 124 (39) (2020)
Marc Baaden, Mihail Barboiu, Roslyn M Bill, Serena Casanova, Chun-Long Chen, Matthew Conner, Viatcheslav Freger, Bing Gong, Artur Góra, Bruce Hinds, Andreas Horner, Gerhard Hummer, Manish Kumar, Mahesh Lokesh, Sushanta Mitra, Aleksandr Noy, Peter Pohl, Aude Sadet, Mark S P Sansom, Susanna Törnroth-Horsefield, Harish Vashisth
Structure and function of natural proteins for water transport: general discussion. Faraday discussions 209 (0) (2019)
Astrid F Brandner, Stepan Timr, Simone Melchionna, Philippe Derreumaux, Marc Baaden, Fabio Sterpone
Modelling lipid systems in fluid with Lattice Boltzmann Molecular Dynamics simulations and hydrodynamics. Scientific reports 9 (1) (2019)
Antoine Taly, F Nitti, Marc Baaden, Samuela Pasquali
Molecular modelling as the spark for active learning approaches for interdisciplinary biology teaching. Interface focus 9 (3) (2019)
Mirko Zaffagnini, Christophe H Marchand, Marco Malferrari, Samuel Murail, Sara Bonacchi, Damiano Genovese, Marco Montalti, Giovanni Venturoli, Giuseppe Falini, Marc Baaden, Stéphane D Lemaire, Simona Fermani, Paolo Trost
Glutathionylation primes soluble glyceraldehyde-3-phosphate dehydrogenase for late collapse into insoluble aggregates. Proceedings of the National Academy of Sciences of the United States of America 116 (51) (2019)
Jens-Christian Röper, Démosthène Mitrossilis, Guillaume Stirnemann, François Waharte, Isabel Brito, Maria-Elena Fernandez-Sanchez, Marc Baaden, Jean Salamero, Emmanuel Farge
The major β-catenin/E-cadherin junctional binding site is a primary molecular mechano-transductor of differentiation in vivo. eLife 7 (2018)
Marc Baaden, Olivier Delalande, Nicolas Ferey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly
Ten simple rules to create a serious game, illustrated with examples from structural biology. PLoS computational biology 14 (3) (2018)
Jérémy Esque, Mark S P Sansom, Marc Baaden, Christophe Oguey
Analyzing protein topology based on Laguerre tessellation of a pore-traversing water network. Scientific reports 8 (1) (2018)
Istvan Kocsis, Mirco Sorci, Heather Vanselous, Samuel Murail, Stephanie E Sanders, Erol Licsandru, Yves-Marie Legrand, Arie Van der Lee, Marc Baaden, Poul B Petersen, Georges Belfort, Mihail Barboiu
Oriented chiral water wires in artificial transmembrane channels. Science advances 4 (3) (2018)
Bogdan Lev, Samuel Murail, Frédéric Poitevin, Brett A Cromer, Marc Baaden, Marc Delarue, Toby W Allen
String method solution of the gating pathways for a pentameric ligand-gated ion channel. Proceedings of the National Academy of Sciences of the United States of America 114 (21) (2017)
Dario De Vecchis, Laetitia Cavellini, Marc Baaden, Jérôme Hénin, Mickaël M Cohen, Antoine Taly
A membrane-inserted structural model of the yeast mitofusin Fzo1. Scientific reports 7 (1) (2017)