Martin Hölzer

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 34

Top Topics

Antimicrobial Resistance

Respiratory Syndrome Coronavirus

Advance Care Planning

Top Venues

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Martin Hölzer
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy. Bioinformatics (Oxford, England) 40 (4) (2024)
Kevin Lamkiewicz, Lisa-Marie Barf, Konrad Sachse, Martin Hölzer
RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level. Genome biology 25 (1) (2024)
Kevin Lamkiewicz, Lisa-Marie Barf, Konrad Sachse, Martin Hölzer
RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level. Genome biology 25 (1) (2024)
Martin Hölzer
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy. Bioinformatics (Oxford, England) 40 (4) (2024)
Martin Hölzer
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy. Bioinformatics (Oxford, England) 40 (4) (2024)
Martin Hölzer
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy. Bioinformatics (Oxford, England) 40 (4) (2024)
Eva Aßmann, Shelesh Agrawal, Laura Orschler, Sindy Böttcher, Susanne Lackner, Martin Hölzer
Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data. GigaScience 13 (2024)
Muriel Ritsch, Tom Eulenfeld, Kevin Lamkiewicz, Andreas Schoen, Friedemann Weber, Martin Hölzer, Manja Marz
Endogenous Bornavirus-like Elements in Bats: Evolutionary Insights from the Conserved Riboviral L-Gene in Microbats and Its Antisense Transcription in Myotis daubentonii . Viruses 16 (8) (2024)
Martin Hölzer
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy. Bioinformatics (Oxford, England) 40 (4) (2024)
Eva Aßmann, Shelesh Agrawal, Laura Orschler, Sindy Böttcher, Susanne Lackner, Martin Hölzer
Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data. GigaScience 13 (2024)
Muriel Ritsch, Tom Eulenfeld, Kevin Lamkiewicz, Andreas Schoen, Friedemann Weber, Martin Hölzer, Manja Marz
Endogenous Bornavirus-like Elements in Bats: Evolutionary Insights from the Conserved Riboviral L-Gene in Microbats and Its Antisense Transcription in Myotis daubentonii . Viruses 16 (8) (2024)
Kevin Lamkiewicz, Lisa-Marie Barf, Konrad Sachse, Martin Hölzer
RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level. Genome biology 25 (1) (2024)
Mateusz Jundzill, Riccardo Spott, Mara Lohde, Martin Hölzer, Adrian Viehweger, Christian Brandt
Managing and monitoring a pandemic: showcasing a practical approach for the genomic surveillance of SARS-CoV-2. Database : the journal of biological databases and curation 2023 (2023)
Adrian Viehweger, Mike Marquet, Martin Hölzer, Nadine Dietze, Mathias W Pletz, Christian Brandt
Nanopore-based enrichment of antimicrobial resistance genes - a case-based study. GigaByte (Hong Kong, China) 2023 (2023)
Adrian Viehweger, Mike Marquet, Martin Hölzer, Nadine Dietze, Mathias W Pletz, Christian Brandt
Nanopore-based enrichment of antimicrobial resistance genes - a case-based study. GigaByte (Hong Kong, China) 2023 (2023)
Christian Kohler, Jacqueline King, Lina Stacker, Katja V Goller, Juliane Moritz, Anne Pohlmann, Neetika Nath, Ana Tzvetkova, Maximilian Rieck, Sofia Paraskevopoulou, Denis Beslic, Martin Hölzer, Stephan Fuchs, Janine Ziemann, Lars Kaderali, Martin Beer, Nils-Olaf Hübner, Karsten Becker
Neighborhood Watch: Genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020-2022. Emerging microbes & infections (2023)
Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina Sakharova, Manja Marz, Alejandro Reyes, Martin Hölzer, Robert D Finn
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models. PLoS computational biology 19 (8) (2023)
Sigrid Baumgarte, Felix Hartkopf, Martin Hölzer, Max von Kleist, Sabine Neitz, Martin Kriegel, Kirsten Bollongino
Investigation of a Limited but Explosive COVID-19 Outbreak in a German Secondary School. Viruses 14 (1) (2022)
Giselle C Martín-Hernández, Bettina Müller, Christian Brandt, Martin Hölzer, Adrian Viehweger, Volkmar Passoth
Near Chromosome-Level Genome Assembly and Annotation of Rhodotorula babjevae Strains Reveals High Intraspecific Divergence. Journal of fungi (Basel, Switzerland) 8 (4) (2022)
Alice Wittig, Fábio Malcher Miranda, Martin Hölzer, Tom Altenburg, Jakub M Bartoszewicz, Sebastian Beyvers, Marius A Dieckmann, Ulrich Genske, Sven H Giese, Melania Nowicka, Hugues Richard, Henning Schiebenhoefer, Anna-Juliane Schmachtenberg, Paul Sieben, Ming Tang, Julius Tembrockhaus, Bernhard Y Renard, Stephan Fuchs
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance. Bioinformatics (Oxford, England) 38 (17) (2022)
Mike Marquet, Martin Hölzer, Mathias W Pletz, Adrian Viehweger, Oliwia Makarewicz, Ralf Ehricht, Christian Brandt
What the Phage: a scalable workflow for the identification and analysis of phage sequences. GigaScience 11 (2022)
Renaud Van Damme, Martin Hölzer, Adrian Viehweger, Bettina Müller, Erik Bongcam-Rudloff, Christian Brandt
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN). PLoS computational biology 17 (2) (2021)
Karolin Heinze, Martin Hölzer, Martin Ungelenk, Melanie Gerth, Juergen Thomale, Regine Heller, Claire R Morden, Kirk James McManus, Alexander S Mosig, Matthias Dürst, Ingo B Runnebaum, Norman Häfner
RUNX3 Transcript Variants Have Distinct Roles in Ovarian Carcinoma and Differently Influence Platinum Sensitivity and Angiogenesis. Cancers 13 (3) (2021)
Sebastien Calvignac-Spencer, Matthias Budt, Matthew Huska, Hugues Richard, Luca Leipold, Linus B Grabenhenrich, Torsten Semmler, Max von Kleist, Stefan Kröger, Thorsten Wolff, Martin Hölzer
Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany. Viruses 13 (8) (2021)
Roland Kotolloshi, Martin Hölzer, Mieczyslaw Gajda, Marc-Oliver Grimm, Daniel Steinbach
SLC35F2, a Transporter Sporadically Mutated in the Untranslated Region, Promotes Growth, Migration, and Invasion of Bladder Cancer Cells. Cells 10 (1) (2021)
Sara Saheb Kashaf, Diana M Proctor, Clay Deming, Paul Saary, Martin Hölzer, null null, Monica E Taylor, Heidi H Kong, Julie A Segre, Alexandre Almeida, Robert D Finn
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions. Nature microbiology 7 (1) (2021)
Will A Overholt, Martin Hölzer, Patricia Geesink, Celia Diezel, Manja Marz, Kirsten Küsel
Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome-assembled genomes from a complex aquifer system. Environmental microbiology 22 (9) (2020)
Martin Hölzer
A decade of de novo transcriptome assembly: Are we there yet? Molecular ecology resources 21 (1) (2020)
David Carrasco Flores, Markus Fricke, Valentin Wesp, Daniel Desirò, Anja Kniewasser, Martin Hölzer, Manja Marz, Maria Mittag
A marine Chlamydomonas sp. emerging as an algal model. Journal of phycology 57 (1) (2020)
Marie Lataretu, Martin Hölzer
RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow. Genes 11 (12) (2020)
Stephan Peter, Martin Hölzer, Kevin Lamkiewicz, Pietro Speroni di Fenizio, Hassan Al Hwaeer, Manja Marz, Stefan Schuster, Peter Dittrich, Bashar Ibrahim
Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis. Viruses 11 (5) (2019)
Nelly F Mostajo, Marie Lataretu, Sebastian Krautwurst, Florian Mock, Daniel Desirò, Kevin Lamkiewicz, Maximilian Collatz, Andreas Schoen, Friedemann Weber, Manja Marz, Martin Hölzer
A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes. NAR genomics and bioinformatics 2 (1) (2019)
Adrian Viehweger, Sebastian Krautwurst, Kevin Lamkiewicz, Ramakanth Madhugiri, John Ziebuhr, Martin Hölzer, Manja Marz
Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis. Genome research 29 (9) (2019)
Zhiyang Chen, Elias Moris Amro, Friedrich Becker, Martin Hölzer, Seyed Mohammad Mahdi Rasa, Sospeter Ngoci Njeru, Bing Han, Simone Di Sanzo, Yulin Chen, Duozhuang Tang, Si Tao, Ronny Haenold, Marco Groth, Vasily S Romanov, Joanna M Kirkpatrick, Johann M Kraus, Hans A Kestler, Manja Marz, Alessandro Ori, Francesco Neri, Yohei Morita, Karl Lenhard Rudolph
Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation. The Journal of experimental medicine 216 (1) (2018)