Alexandre Almeida

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 11

Top Venues

Nature communications

Nature biotechnology

Nature microbiology

Nature protocols

European Bioinformatics Institute

Institut Pasteur (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Bioinformatics Institute Aug 01 2017

United Kingdom

EBI-Sanger Postdoctoral (ESPOD) fellow

Institut Pasteur Oct 01 2013 - Jun 30 2017

France

PhD candidate :: Department of Microbiology

Education History

Institut Pasteur Oct 01 2013 - Mar 31 2017

France

PHD :: Department of Microbiology

University of Porto

Portugal

MSC :: IPATIMUP

University of Porto

Portugal

BSC :: Department of Biochemistry

Publications

Shuqin Zeng, Alexandre Almeida, Shiping Li, Junjie Ying, Hua Wang, Yi Qu, Reynolds Paul Ross, Catherine Stanton, Zhemin Zhou, Xiaoyu Niu, Dezhi Mu, Shaopu Wang
A metagenomic catalog of the early-life human gut virome. Nature communications 15 (1) (2024)
Shuqin Zeng, Alexandre Almeida, Shiping Li, Junjie Ying, Hua Wang, Yi Qu, Reynolds Paul Ross, Catherine Stanton, Zhemin Zhou, Xiaoyu Niu, Dezhi Mu, Shaopu Wang
A metagenomic catalog of the early-life human gut virome. Nature communications 15 (1) (2024)
Shuqin Zeng, Alexandre Almeida, Shiping Li, Junjie Ying, Hua Wang, Yi Qu, Reynolds Paul Ross, Catherine Stanton, Zhemin Zhou, Xiaoyu Niu, Dezhi Mu, Shaopu Wang
A metagenomic catalog of the early-life human gut virome. Nature communications 15 (1) (2024)
Shuqin Zeng, Alexandre Almeida, Shiping Li, Junjie Ying, Hua Wang, Yi Qu, Reynolds Paul Ross, Catherine Stanton, Zhemin Zhou, Xiaoyu Niu, Dezhi Mu, Shaopu Wang
A metagenomic catalog of the early-life human gut virome. Nature communications 15 (1) (2024)
Shuqin Zeng, Dhrati Patangia, Alexandre Almeida, Zhemin Zhou, Dezhi Mu, R Paul Ross, Catherine Stanton, Shaopu Wang
A compendium of 32,277 metagenome-assembled genomes and over 80 million genes from the early-life human gut microbiome. Nature communications 13 (1) (2022)
Sara Saheb Kashaf, Alexandre Almeida, Julia A Segre, Robert D Finn
Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data. Nature protocols 16 (5) (2021)
Cynthia Maria Chibani, Alexander Mahnert, Guillaume Borrel, Alexandre Almeida, Almut Werner, Jean-François Brugère, Simonetta Gribaldo, Robert D Finn, Ruth Anne Schmitz, Christine Moissl-Eichinger
A catalogue of 1,167 genomes from the human gut archaeome. Nature microbiology 7 (1) (2021)
Sara Saheb Kashaf, Diana M Proctor, Clay Deming, Paul Saary, Martin Hölzer, null null, Monica E Taylor, Heidi H Kong, Julie A Segre, Alexandre Almeida, Robert D Finn
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions. Nature microbiology 7 (1) (2021)
Alexandre Almeida, Stephen Nayfach, Miguel Boland, Francesco Strozzi, Martin Beracochea, Zhou Jason Shi, Katherine S Pollard, Ekaterina Sakharova, Donovan H Parks, Philip Hugenholtz, Nicola Segata, Nikos C Kyrpides, Robert D Finn
A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature biotechnology 39 (1) (2020)
Samuel C Forster, Nitin Kumar, Blessing O Anonye, Alexandre Almeida, Elisa Viciani, Mark D Stares, Matthew Dunn, Tapoka T Mkandawire, Ana Zhu, Yan Shao, Lindsay J Pike, Thomas Louie, Hilary P Browne, Alex L Mitchell, B Anne Neville, Robert D Finn, Trevor D Lawley
A human gut bacterial genome and culture collection for improved metagenomic analyses. Nature biotechnology 37 (2) (2019)
Alessio Milanese, Daniel R Mende, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Miguelangel Cuenca, Pascal Hingamp, Renato Jc Alves, Paul Igor Costea, Luis Pedro Coelho, Thomas Sebastian Benedikt Schmidt, Alexandre Almeida, Alex L Mitchell, Robert D Finn, Jaime Huerta-Cepas, Peer Bork, Georg Zeller, Shinichi Sunagawa
Microbial abundance, activity and population genomic profiling with mOTUs2. Nature communications 10 (1) (2019)

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Publication Activity (10 Years)

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Alexandre Almeida