Bernhard Y Renard (Bernhard Renard)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 24

Top Topics

Mass Spectrometry

Mycobacterium Tuberculosis

Top Venues

Bioinformatics (Oxford, England)

Briefings in bioinformatics

NAR genomics and bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Tobias Pietz, Sukrit Gupta, Christoph N Schlaffner, Saima Ahmed, Hanno Steen, Bernhard Y Renard, Katharina Baum
PEPerMINT: peptide abundance imputation in mass spectrometry-based proteomics using graph neural networks. Bioinformatics (Oxford, England) 40 (Supplement_2) (2024)
Jens-Uwe Ulrich, Lennard Epping, Tanja Pilz, Birgit Walther, Kerstin Stingl, Torsten Semmler, Bernhard Y Renard
Nanopore adaptive sampling effectively enriches bacterial plasmids. mSystems 9 (3) (2024)
Linea Schmidt, Marc Pawlitzki, Bernhard Y Renard, Sven G Meuth, Lars Masanneck
The three-year evolution of Germany's Digital Therapeutics reimbursement program and its path forward. NPJ digital medicine 7 (1) (2024)
Jens-Uwe Ulrich, Lennard Epping, Tanja Pilz, Birgit Walther, Kerstin Stingl, Torsten Semmler, Bernhard Y Renard
Nanopore adaptive sampling effectively enriches bacterial plasmids. mSystems (2024)
Linea Schmidt, Marc Pawlitzki, Bernhard Y Renard, Sven G Meuth, Lars Masanneck
The three-year evolution of Germany's Digital Therapeutics reimbursement program and its path forward. NPJ digital medicine 7 (1) (2024)
Tobias Pietz, Sukrit Gupta, Christoph N Schlaffner, Saima Ahmed, Hanno Steen, Bernhard Y Renard, Katharina Baum
PEPerMINT: peptide abundance imputation in mass spectrometry-based proteomics using graph neural networks. Bioinformatics (Oxford, England) 40 (Supplement_2) (2024)
Jens-Uwe Ulrich, Lennard Epping, Tanja Pilz, Birgit Walther, Kerstin Stingl, Torsten Semmler, Bernhard Y Renard
Nanopore adaptive sampling effectively enriches bacterial plasmids. mSystems 9 (3) (2024)
Jens-Uwe Ulrich, Lennard Epping, Tanja Pilz, Birgit Walther, Kerstin Stingl, Torsten Semmler, Bernhard Y Renard
Nanopore adaptive sampling effectively enriches bacterial plasmids. mSystems 9 (3) (2024)
Denis Beslic, Georg Tscheuschner, Bernhard Y Renard, Michael G Weller, Thilo Muth
Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly. Briefings in bioinformatics 24 (1) (2023)
Vitor C Piro, Bernhard Y Renard
Contamination detection and microbiome exploration with GRIMER. GigaScience 12 (2023)
Ferdous Nasri, Kunaphas Kongkitimanon, Alice Wittig, Jorge Sánchez Cortés, Annika Brinkmann, Andreas Nitsche, Anna-Juliane Schmachtenberg, Bernhard Y Renard, Stephan Fuchs
MpoxRadar: a worldwide MPXV genomic surveillance dashboard. Nucleic acids research (2023)
Vitor C Piro, Bernhard Y Renard
Contamination detection and microbiome exploration with GRIMER. GigaScience 12 (2023)
Denis Beslic, Georg Tscheuschner, Bernhard Y Renard, Michael G Weller, Thilo Muth
Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly. Briefings in bioinformatics 24 (1) (2023)
Jakub M Bartoszewicz, Ferdous Nasri, Melania Nowicka, Bernhard Y Renard
Detecting DNA of novel fungal pathogens using ResNets and a curated fungi-hosts data collection. Bioinformatics (Oxford, England) 38 (Supplement_2) (2022)
Jens-Uwe Ulrich, Ahmad Lutfi, Kilian Rutzen, Bernhard Y Renard
ReadBouncer: precise and scalable adaptive sampling for nanopore sequencing. Bioinformatics (Oxford, England) 38 (Suppl 1) (2022)
Alice Wittig, Fábio Malcher Miranda, Martin Hölzer, Tom Altenburg, Jakub M Bartoszewicz, Sebastian Beyvers, Marius A Dieckmann, Ulrich Genske, Sven H Giese, Melania Nowicka, Hugues Richard, Henning Schiebenhoefer, Anna-Juliane Schmachtenberg, Paul Sieben, Ming Tang, Julius Tembrockhaus, Bernhard Y Renard, Stephan Fuchs
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance. Bioinformatics (Oxford, England) 38 (17) (2022)
Denis Beslic, Georg Tscheuschner, Bernhard Y Renard, Michael G Weller, Thilo Muth
Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly. Briefings in bioinformatics (2022)
Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline J Brito, C Titus Brown, Jan P Buchmann, Aydin Buluç, Bo Chen, Rayan Chikhi, Philip Thomas Lanken Conradsen Clausen, Alexandru Cristian, Piotr Wojciech Dabrowski, Aaron E Darling, Rob Egan, Eleazar Eskin, Evangelos Georganas, Eugene Goltsman, Melissa A Gray, Lars Hestbjerg Hansen, Steven Hofmeyr, Pingqin Huang, Luiz Irber, Huijue Jia, Tue Sparholt Jørgensen, Silas D Kieser, Terje Klemetsen, Axel Kola, Mikhail Kolmogorov, Anton Korobeynikov, Jason Kwan, Nathan LaPierre, Claire Lemaitre, Chenhao Li, Antoine Limasset, Fábio Malcher Miranda, Serghei Mangul, Vanessa R Marcelino, Camille Marchet, Pierre Marijon, Dmitry Meleshko, Daniel R Mende, Alessio Milanese, Niranjan Nagarajan, Jakob Nissen, Sergey Nurk, Leonid Oliker, Lucas Paoli, Pierre Peterlongo, Vitor C Piro, Jacob S Porter, Simon Rasmussen, Evan R Rees, Knut Reinert, Bernhard Y Renard, Espen Mikal Robertsen, Gail L Rosen, Hans-Joachim Ruscheweyh, Varuni Sarwal, Nicola Segata, Enrico Seiler, Lizhen Shi, Fengzhu Sun, Shinichi Sunagawa, Søren Johannes Sørensen, Ashleigh Thomas, Chengxuan Tong, Mirko Trajkovski, Julien Tremblay, Gherman Uritskiy, Riccardo Vicedomini, Zhengyang Wang, Ziye Wang, Zhong Wang, Andrew Warren, Nils Peder Willassen, Katherine Yelick, Ronghui You, Georg Zeller, Zhengqiao Zhao, Shanfeng Zhu, Jie Zhu, Ruben Garrido-Oter, Petra Gastmeier, Stéphane Hacquard, Susanne Häußler, Ariane Khaledi, Friederike Maechler, Fantin Mesny, Simona Radutoiu, Paul Schulze-Lefert, Nathiana Smit, Till Strowig, Andreas Bremges, Alexander Sczyrba, Alice Carolyn McHardy
Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature methods 19 (4) (2022)
Jakub M Bartoszewicz, Anja Seidel, Bernhard Y Renard
Interpretable detection of novel human viruses from genome sequencing data. NAR genomics and bioinformatics 3 (1) (2021)
Tim Van Den Bossche, Benoit Josef Kunath, Kay Schallert, Stephanie S Schäpe, Paul E Abraham, Jean Armengaud, Magnus Øverlie Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, Richard J Giannone, Timothy J Griffin, Live Heldal Hagen, Rashi Halder, Céline Henry, Robert L Hettich, Robert Heyer, Pratik D Jagtap, Nico Jehmlich, Marlene Jensen, Catherine Juste, Manuel Kleiner, Olivier Langella, Theresa Lehmann, Emma Leith, Patrick May, Bart Mesuere, Guylaine Miotello, Samantha L Peters, Olivier Pible, Pedro T Queiros, Udo Reichl, Bernhard Y Renard, Henning Schiebenhoefer, Alexander Sczyrba, Alessandro Tanca, Kathrin Trappe, Jean-Pierre Trezzi, Sergio Uzzau, Pieter Verschaffelt, Martin Von Bergen, Paul Wilmes, Maximilian Wolf, Lennart Martens, Thilo Muth
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nature communications 12 (1) (2021)
Maria Muñoz-Benavent, Felix Hartkopf, Tim Van Den Bossche, Vitor C Piro, Carlos García-Ferris, Amparo Latorre, Bernhard Y Renard, Thilo Muth
gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms. NAR genomics and bioinformatics 2 (3) (2020)
Enrico Seiler, Kathrin Trappe, Bernhard Y Renard
Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation. PLoS computational biology 15 (7) (2019)
Tobias P Loka, Simon H Tausch, Bernhard Y Renard
Reliable variant calling during runtime of Illumina sequencing. Scientific reports 9 (1) (2019)
Christine Jandrasits, Stefan Kröger, Walter Haas, Bernhard Y Renard
Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters. PLoS computational biology 15 (12) (2019)