Michael B Stadler

ORCID

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 16

Top Venues

Friedrich Miescher Institute for Biomedical Research

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Friedrich Miescher Institute for Biomedical Research

Switzerland

Head of Computational Biology

Publications

Charlotte Soneson, Alexandra M Bendel, Guillaume Diss, Michael B Stadler
mutscan-a flexible R package for efficient end-to-end analysis of multiplexed assays of variant effect data. Genome biology 24 (1) (2023)
Sandra Kessler, Maryline Minoux, Onkar Joshi, Yousra Ben Zouari, Sebastien Ducret, Fiona Ross, Nathalie Vilain, Adwait Salvi, Joachim Wolff, Hubertus Kohler, Michael B Stadler, Filippo M Rijli
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest. Nature communications 14 (1) (2023)
Sebastian Kaluscha, Silvia Domcke, Christiane Wirbelauer, Michael B Stadler, Sevi Durdu, Lukas Burger, Dirk Schübeler
Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation. Nature genetics 54 (12) (2022)
Dania Machlab, Lukas Burger, Charlotte Soneson, Filippo M Rijli, Dirk Schübeler, Michael B Stadler
monaLisa: an R/Bioconductor package for identifying regulatory motifs. Bioinformatics (Oxford, England) 38 (9) (2022)
Charlotte Soneson, Avi Srivastava, Rob Patro, Michael B Stadler
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data. PLoS computational biology 17 (1) (2021)
Mario Iurlaro, Michael B Stadler, Francesca Masoni, Zainab Jagani, Giorgio Giacomo Galli, Dirk Schübeler
Mammalian SWI/SNF continuously restores local accessibility to chromatin. Nature genetics 53 (3) (2021)
Taro Kitazawa, Dania Machlab, Onkar Joshi, Nicola Maiorano, Hubertus Kohler, Sebastien Ducret, Sandra Kessler, Henrik Gezelius, Charlotte Soneson, Panagiotis Papasaikas, Guillermina López-Bendito, Michael B Stadler, Filippo M Rijli
A unique bipartite Polycomb signature regulates stimulus-response transcription during development. Nature genetics 53 (3) (2021)
Shuang Song, Chun Cao, Mohamed-Amin Choukrallah, Fengyuan Tang, Gerhard Christofori, Hubertus Kohler, Fabian Wu, Barna D Fodor, Mathias Frederiksen, Simon N Willis, Jacob T Jackson, Stephen L Nutt, Stefan Dirnhofer, Michael B Stadler, Patrick Matthias
OBF1 and Oct factors control the germinal center transcriptional program. Blood 137 (21) (2021)
Ilya Lukonin, Denise Serra, Ludivine Challet Meylan, Katrin Volkmann, Janine Baaten, Rui Zhao, Shelly Meeusen, Karyn Colman, Francisca Maurer, Michael B Stadler, Jeremy L Jenkins, Prisca Liberali
Phenotypic landscape of intestinal organoid regeneration. Nature 586 (7828) (2020)
Charlotte Soneson, Federico Marini, Florian Geier, Michael I Love, Michael B Stadler
ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R. F1000Research (2020)
Charlotte Soneson, Federico Marini, Florian Geier, Michael I Love, Michael B Stadler
ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R. F1000Research 9 (2020)
Christina Fassnacht, Cristina Tocchini, Pooja Kumari, Dimos Gaidatzis, Michael B Stadler, Rafal Ciosk
The CSR-1 endogenous RNAi pathway ensures accurate transcriptional reprogramming during the oocyte-to-embryo transition in Caenorhabditis elegans. PLoS genetics 14 (3) (2018)
Arianna Bellazzo, Giulio Di Minin, Elena Valentino, Daria Sicari, Denis Torre, Luigi Marchionni, Federica Serpi, Michael B Stadler, Daniela Taverna, Gaia Zuccolotto, Isabella Monia Montagner, Antonio Rosato, Federica Tonon, Cristina Zennaro, Chiara Agostinis, Roberta Bulla, Miguel Mano, Giannino Del Sal, Licio Collavin
Cell-autonomous and cell non-autonomous downregulation of tumor suppressor DAB2IP by microRNA-149-3p promotes aggressiveness of cancer cells. Cell death and differentiation 25 (7) (2018)
Maryline Minoux, Sjoerd Holwerda, Antonio Vitobello, Taro Kitazawa, Hubertus Kohler, Michael B Stadler, Filippo M Rijli
Gene bivalency at Polycomb domains regulates cranial neural crest positional identity. Science (New York, N.Y.) 355 (6332) (2017)
Takashi S Miki, Sarah H Carl, Michael B Stadler, Helge Großhans
XRN2 Autoregulation and Control of Polycistronic Gene Expresssion in Caenorhabditis elegans. PLoS genetics 12 (9) (2016)
Dimos Gaidatzis, Lukas Burger, Maria Florescu, Michael B Stadler
Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation. Nature biotechnology 33 (7) (2015)

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Publication Activity (10 Years)

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Michael B Stadler