Federico Marini

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 32

Top Topics

Immune Response

Multiple Sclerosis

Regulatory T Cells

Top Venues

BMC bioinformatics

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Chung Shing Rex Ha, Martina Müller-Nuraysid, Agnese Petrera, Stefanie M Hauck, Federico Marini, Detlef K Bartsch, Emily P Slater, Konstantin Strauch
Proteomics biomarker discovery for individualized prevention of familial pancreatic cancer using statistical learning. PloS one 18 (1) (2023)
Chung Shing Rex Ha, Martina Müller-Nuraysid, Agnese Petrera, Stefanie M Hauck, Federico Marini, Detlef K Bartsch, Emily P Slater, Konstantin Strauch
Proteomics biomarker discovery for individualized prevention of familial pancreatic cancer using statistical learning. PloS one 18 (1) (2023)
Julian Sohl, Ann-Kathrin Hartmann, Jennifer Hahlbrock, Joschka Bartneck, Michael Stassen, Matthias Klein, Matthias Bros, Stephan Grabbe, Federico Marini, Kevin Woods, Borhane Guezguez, Matthias Mack, Hansjörg Schild, Sabine Muth, Felix Melchior, Hans Christian Probst, Peter Langguth, Markus Philipp Radsak
Author Correction: Dithranol as novel co-adjuvant for non-invasive dermal vaccination. NPJ vaccines 8 (1) (2023)
Matteo Rosellini, Alicia Poplawski, Ejlal A Omer, Nadeen T Ali, Federico Marini, Jan-Heiner Küpper, Thomas Efferth
The Effect of Plastic-Related Compounds on Transcriptome-Wide Gene Expression on CYP2C19-Overexpressing HepG2 Cells. Molecules (Basel, Switzerland) 28 (16) (2023)
Chung Shing Rex Ha, Martina Müller-Nuraysid, Agnese Petrera, Stefanie M Hauck, Federico Marini, Detlef K Bartsch, Emily P Slater, Konstantin Strauch
Proteomics biomarker discovery for individualized prevention of familial pancreatic cancer using statistical learning. PloS one 18 (1) (2023)
Sam Bryce-Smith, Dominik Burri, Matthew R Gazzara, Christina J Herrmann, Weronika Danecka, Christina M Fitzsimmons, Yuk Kei Wan, Farica Zhuang, Mervin M Fansler, José María Fernandez, Meritxell Ferret, Asier Gonzalez-Uriarte, Samuel Haynes, Chelsea Herdman, Alexander Kanitz, Maria Katsantoni, Federico Marini, Euan McDonnel, Benoit P Nicolet, Chi-Lam Poon, Gregor Rot, Leonard Schärfen, Pin-Jou Wu, Yoseop Yoon, Yoseph Barash, Mihaela Zavolan
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. bioRxiv : the preprint server for biology (2023)
Chung Shing Rex Ha, Martina Müller-Nuraysid, Agnese Petrera, Stefanie M Hauck, Federico Marini, Detlef K Bartsch, Emily P Slater, Konstantin Strauch
Proteomics biomarker discovery for individualized prevention of familial pancreatic cancer using statistical learning. PloS one 18 (1) (2023)
Chung Shing Rex Ha, Martina Müller-Nuraysid, Agnese Petrera, Stefanie M Hauck, Federico Marini, Detlef K Bartsch, Emily P Slater, Konstantin Strauch
Proteomics biomarker discovery for individualized prevention of familial pancreatic cancer using statistical learning. PloS one 18 (1) (2023)
Thomas G Nührenberg, Jasmin Stöckle, Federico Marini, Mark Zurek, Björn A Grüning, Vladimir Benes, Lutz Hein, Franz-Josef Neumann, Christian Stratz, Marco Cederqvist, Willibald Hochholzer
Impact of high platelet turnover on the platelet transcriptome: Results from platelet RNA-sequencing in patients with sepsis. PloS one 17 (1) (2022)
Thiago Britto-Borges, Annekathrin Ludt, Etienne Boileau, Enio Gjerga, Federico Marini, Christoph Dieterich
Magnetique: an interactive web application to explore transcriptome signatures of heart failure. Journal of translational medicine 20 (1) (2022)
Julian Sohl, Ann-Kathrin Hartmann, Jennifer Hahlbrock, Joschka Bartneck, Michael Stassen, Matthias Klein, Matthias Bros, Stephan Grabbe, Federico Marini, Kevin Woods, Borhane Guezguez, Matthias Mack, Hansjörg Schild, Sabine Muth, Felix Melchior, Hans Christian Probst, Peter Langguth, Markus Philipp Radsak
Dithranol as novel co-adjuvant for non-invasive dermal vaccination. NPJ vaccines 7 (1) (2022)
Rocio Joo, Andrea Sánchez-Tapia, Sara Mortara, Yanina Bellini Saibene, Heather Turner, Dorothea Hug Peter, Natalia Soledad Morandeira, Matt Bannert, Batool Almazrouq, Elizabeth Hare, Laura Ación, Juan Pablo Narváez-Gómez, Marcela Alfaro-Córdoba, Federico Marini, Rita Giordano, Silvia P Canelón, Anicet E T Ebou, Adithi R Upadhya, Joselyn Chávez, Janani Ravi
Ten simple rules to host an inclusive conference. PLoS computational biology 18 (7) (2022)
Juliane Mooz, Kristina Riegel, Hari Ps, Anguraj Sadanandam, Federico Marini, Matthias Klein, Ulrike Werner, Wilfried Roth, Annett Wilken-Schmitz, Irmgard Tegeder, Krishnaraj Rajalingam
ARAF suppresses ERBB3 expression and metastasis in a subset of lung cancers. Science advances 8 (11) (2022)
Dennis Das Gupta, Christoph Paul, Nadine Samel, Maria Bieringer, Daniel Staudenraus, Federico Marini, Hartmann Raifer, Lisa Menke, Lea Hansal, Bärbel Camara, Edith Roth, Patrick Daum, Michael Wanzel, Marco Mernberger, Andrea Nist, Uta-Maria Bauer, Frederik Helmprobst, Malte Buchholz, Katrin Roth, Lorenz Bastian, Alina M Hartmann, Claudia Dorothea Baldus, Koichi Ikuta, Andreas Neubauer, Andreas Burchert, Hans-Martin Jäck, Matthias Klein, Tobias Bopp, Thorsten Stiewe, Axel Pagenstecher, Michael Lohoff
IRF4 deficiency vulnerates B-cell progeny for leukemogenesis via somatically acquired Jak3 mutations conferring IL-7 hypersensitivity. Cell death and differentiation 29 (11) (2022)
Samuele Notarbartolo, Valeria Ranzani, Alessandra Bandera, Paola Gruarin, Valeria Bevilacqua, Anna Rita Putignano, Andrea Gobbini, Eugenia Galeota, Cristina Manara, Mauro Bombaci, Elisa Pesce, Elena Zagato, Andrea Favalli, Maria Lucia Sarnicola, Serena Curti, Mariacristina Crosti, Martina Martinovic, Tanya Fabbris, Federico Marini, Lorena Donnici, Mariangela Lorenzo, Marilena Mancino, Riccardo Ungaro, Andrea Lombardi, Davide Mangioni, Antonio Muscatello, Stefano Aliberti, Francesco Blasi, T Maria DeFeo, Daniele Prati, Lara Manganaro, Francesca Granucci, Antonio Lanzavecchia, Raffaele de Francesco, Andrea Gori, Renata Grifantini, Sergio Abrignani
Integrated longitudinal immunophenotypic, transcriptional and repertoire analyses delineate immune responses in COVID-19 patients. Science immunology 6 (62) (2021)
Claudia Paret, Nadine Lehmann, Hannah Bender, Maximilian Sprang, Clemens J Sommer, Denis Cana, Larissa Seidmann, Arthur Wingerter, Marie A Neu, Khalifa El Malki, Francesca Alt, Lea Roth, Federico Marini, Malte Ottenhausen, Martin Glaser, Markus Knuf, Alexandra Russo, Joerg Faber
Identification of an Immunogenic Medulloblastoma-Specific Fusion Involving EPC2 and GULP1. Cancers 13 (22) (2021)
Federico Marini, Annekathrin Ludt, Jan Linke, Konstantin Strauch
GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data. BMC bioinformatics 22 (1) (2021)
Federico Marini, Jan Linke, Harald Binder
ideal: an R/Bioconductor package for interactive differential expression analysis. BMC bioinformatics 21 (1) (2020)
Julian Roewe, Georgios Stavrides, Marcel Strueve, Arjun Sharma, Federico Marini, Amrit Mann, Stephanie A Smith, Ziya Kaya, Birgit Strobl, Mathias Müller, Christian Reinhardt, James H Morrissey, Markus Bosmann
Bacterial polyphosphates interfere with the innate host defense to infection. Nature communications 11 (1) (2020)
Charlotte Soneson, Federico Marini, Florian Geier, Michael I Love, Michael B Stadler
ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R. F1000Research (2020)
Charlotte Soneson, Federico Marini, Florian Geier, Michael I Love, Michael B Stadler
ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R. F1000Research 9 (2020)
Katarzyna Bogucka, Malvika Pompaiah, Federico Marini, Harald Binder, Gregory Harms, Manuel Kaulich, Matthias Klein, Christian Michel, Markus P Radsak, Sebastian Rosigkeit, Peter Grimminger, Hansjörg Schild, Krishnaraj Rajalingam
ERK3/MAPK6 controls IL-8 production and chemotaxis. eLife 9 (2020)
Katarzyna Bogucka-Janczi, Federico Marini, Sebastian Rosigkeit, Janine Schloeder, Helmut Jonuleit, Kerstin David, Margarita Schlackow, Krishnaraj Rajalingam
ERK3/MAPK6 is required for KRAS-mediated NSCLC tumorigenesis. Cancer gene therapy 28 (5) (2020)
Krutika S Gaonkar, Federico Marini, Komal S Rathi, Payal Jain, Yuankun Zhu, Nicholas A Chimicles, Miguel A Brown, Ammar S Naqvi, Bo Zhang, Phillip B Storm, John M Maris, Pichai Raman, Adam C Resnick, Konstantin Strauch, Jaclyn N Taroni, Jo Lynne Rokita
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions. BMC bioinformatics 21 (1) (2020)
Katarzyna Bogucka-Janczi, Federico Marini, Sebastian Rosigkeit, Janine Schloeder, Helmut Jonuleit, Kerstin David, Margarita Schlackow, Krishnaraj Rajalingam
Correction: ERK3/MAPK6 is required for KRAS-mediated NSCLC tumorigenesis. Cancer gene therapy (2020)
Robert A Amezquita, Aaron T L Lun, Etienne Becht, Vince J Carey, Lindsay N Carpp, Ludwig Geistlinger, Federico Marini, Kevin Christophe Rue-Albrecht, Davide Risso, Charlotte Soneson, Levi Waldron, Hervé Pagès, Mike L Smith, Wolfgang Huber, Martin Morgan, Raphael Gottardo, Stephanie C Hicks
Orchestrating single-cell analysis with Bioconductor. Nature methods 17 (2) (2019)
Junaid Akhtar, Nastasja Kreim, Federico Marini, Giriram Mohana, Daniel Brüne, Harald Binder, Jean-Yves Roignant
Promoter-proximal pausing mediated by the exon junction complex regulates splicing. Nature communications 10 (1) (2019)
Federico Marini, Harald Binder
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components. BMC bioinformatics 20 (1) (2019)
Christina Lückel, Felix S R Picard, Hartmann Raifer, Lucia Campos Carrascosa, Anna Guralnik, Yajuan Zhang, Matthias Klein, Stefan Bittner, Falk Steffen, Sonja Moos, Federico Marini, Renee Gloury, Florian C Kurschus, Ying-Yin Chao, Wilhelm Bertrams, Veronika Sexl, Bernd Schmeck, Lynn Bonetti, Melanie Grusdat, Michael Lohoff, Christina E Zielinski, Frauke Zipp, Axel Kallies, Dirk Brenner, Michael Berger, Tobias Bopp, Björn Tackenberg, Magdalena Huber
IL-17+ CD8+ T cell suppression by dimethyl fumarate associates with clinical response in multiple sclerosis. Nature communications 10 (1) (2019)
Junaid Akhtar, Piyush More, Steffen Albrecht, Federico Marini, Waldemar Kaiser, Apurva Kulkarni, Leszek Wojnowski, Jean-Fred Fontaine, Miguel A Andrade-Navarro, Marion Silies, Christian Berger
TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay. Life science alliance 2 (4) (2019)
Kevin Christophe Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T L Lun
iSEE: Interactive SummarizedExperiment Explorer. F1000Research 7 (2018)
Tina Haase, Christian Müller, Julia Krause, Caroline Röthemeier, Justus Stenzig, Sonja Kunze, Melanie Waldenberger, Thomas Münzel, Norbert Pfeiffer, Philipp S Wild, Matthias Michal, Federico Marini, Mahir Karakas, Karl J Lackner, Stefan Blankenberg, Tanja Zeller
Novel DNA Methylation Sites Influence GPR15 Expression in Relation to Smoking. Biomolecules 8 (3) (2018)