Michael H Baym (Michael Baym)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 33

Top Topics

Escherichia Coli

Multidrug Resistant

Top Venues

Nature communications

Science (New York, N.Y.)

Nature microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Natalia Quinones-Olvera, Siân V Owen, Lucy M McCully, Maximillian G Marin, Eleanor A Rand, Alice C Fan, Oluremi J Martins Dosumu, Kay Paul, Cleotilde E Sanchez Castaño, Rachel Petherbridge, Jillian S Paull, Michael H Baym
Diverse and abundant phages exploit conjugative plasmids. Nature communications 15 (1) (2024)
Natalia Quinones-Olvera, Siân V Owen, Lucy M McCully, Maximillian G Marin, Eleanor A Rand, Alice C Fan, Oluremi J Martins Dosumu, Kay Paul, Cleotilde E Sanchez Castaño, Rachel Petherbridge, Jillian S Paull, Michael H Baym
Diverse and abundant phages exploit conjugative plasmids. Nature communications 15 (1) (2024)
Natalia Quinones-Olvera, Siân V Owen, Lucy M McCully, Maximillian G Marin, Eleanor A Rand, Alice C Fan, Oluremi J Martins Dosumu, Kay Paul, Cleotilde E Sanchez Castaño, Rachel Petherbridge, Jillian S Paull, Michael H Baym
Diverse and abundant phages exploit conjugative plasmids. Nature communications 15 (1) (2024)
Alejandro Couce, Anurag Limdi, Melanie Magnan, Siân V Owen, Cristina M Herren, Richard E Lenski, Olivier Tenaillon, Michael H Baym
Changing fitness effects of mutations through long-term bacterial evolution. Science (New York, N.Y.) 383 (6681) (2024)
Alejandro Couce, Anurag Limdi, Melanie Magnan, Siân V Owen, Cristina M Herren, Richard E Lenski, Olivier Tenaillon, Michael H Baym
Changing fitness effects of mutations through long-term bacterial evolution. Science (New York, N.Y.) 383 (6681) (2024)
Alejandro Couce, Anurag Limdi, Melanie Magnan, Siân V Owen, Cristina M Herren, Richard E Lenski, Olivier Tenaillon, Michael H Baym
Changing fitness effects of mutations through long-term bacterial evolution. Science (New York, N.Y.) 383 (6681) (2024)
Alejandro Couce, Anurag Limdi, Melanie Magnan, Siân V Owen, Cristina M Herren, Richard E Lenski, Olivier Tenaillon, Michael H Baym
Changing fitness effects of mutations through long-term bacterial evolution. Science (New York, N.Y.) 383 (6681) (2024)
Natalia Quinones-Olvera, Siân V Owen, Lucy M McCully, Maximillian G Marin, Eleanor A Rand, Alice C Fan, Oluremi J Martins Dosumu, Kay Paul, Cleotilde E Sanchez Castaño, Rachel Petherbridge, Jillian S Paull, Michael H Baym
Diverse and abundant phages exploit conjugative plasmids. Nature communications 15 (1) (2024)
Natalia Quinones-Olvera, Siân V Owen, Lucy M McCully, Maximillian G Marin, Eleanor A Rand, Alice C Fan, Oluremi J Martins Dosumu, Kay Paul, Cleotilde E Sanchez Castaño, Rachel Petherbridge, Jillian S Paull, Michael H Baym
Diverse and abundant phages exploit conjugative plasmids. Nature communications 15 (1) (2024)
Karel Bå Inda, Leandro Lima, Simone Pignotti, Natalia Quinones-Olvera, Kamil Salikhov, Rayan Chikhi, Gregory Kucherov, Zamin Iqbal, Michael H Baym
Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression. bioRxiv : the preprint server for biology (2023)
Charles L Dulberger, Carlos A Guerrero-Bustamante, Siân V Owen, Sean A Wilson, Michael G Wuo, Rebecca A Garlena, Lexi A Serpa, Daniel A Russell, Junhao Zhu, Ben J Braunecker, Georgia R Squyres, Michael H Baym, Laura L Kiessling, Ethan C Garner, Eric J Rubin, Graham F Hatfull
Mycobacterial nucleoid-associated protein Lsr2 is required for productive mycobacteriophage infection. Nature microbiology (2023)
Akos Nyerges, Svenja Vinke, Regan Flynn, Siân V Owen, Eleanor A Rand, Bogdan Budnik, Eric Keen, Kamesh Narasimhan, Jorge A Marchand, Maximilien S Baas-Thomas, Min Liu, Kangming Chen, Anush Chiappino-Pepe, Fangxiang Hu, Michael H Baym, George M Church
A swapped genetic code prevents viral infections and gene transfer. Nature 615 (7953) (2023)
Anurag Limdi, Michael H Baym
Resolving Deleterious and Near-Neutral Effects Requires Different Pooled Fitness Assay Designs. Journal of molecular evolution (2023)
Akos Nyerges, Svenja Vinke, Regan Flynn, Siân V Owen, Eleanor A Rand, Bogdan Budnik, Eric Keen, Kamesh Narasimhan, Jorge A Marchand, Maximilien S Baas-Thomas, Min Liu, Kangming Chen, Anush Chiappino-Pepe, Fangxiang Hu, Michael H Baym, George M Church
A swapped genetic code prevents viral infections and gene transfer. Nature (2023)
Charles L Dulberger, Carlos A Guerrero-Bustamante, Siân V Owen, Sean A Wilson, Michael G Wuo, Rebecca A Garlena, Lexi A Serpa, Daniel A Russell, Junhao Zhu, Ben J Braunecker, Georgia R Squyres, Michael H Baym, Laura L Kiessling, Ethan C Garner, Eric J Rubin, Graham F Hatfull
Mycobacterial nucleoid-associated protein Lsr2 is required for productive mycobacteriophage infection. Nature microbiology (2023)
Karel Bå Inda, Leandro Lima, Simone Pignotti, Natalia Quinones-Olvera, Kamil Salikhov, Rayan Chikhi, Gregory Kucherov, Zamin Iqbal, Michael H Baym
Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression. bioRxiv : the preprint server for biology (2023)
Charles L Dulberger, Carlos A Guerrero-Bustamante, Siân V Owen, Sean A Wilson, Michael G Wuo, Rebecca A Garlena, Lexi A Serpa, Daniel A Russell, Junhao Zhu, Ben J Braunecker, Georgia R Squyres, Michael H Baym, Laura L Kiessling, Ethan C Garner, Eric J Rubin, Graham F Hatfull
Mycobacterial nucleoid-associated protein Lsr2 is required for productive mycobacteriophage infection. Nature microbiology (2023)
Akos Nyerges, Svenja Vinke, Regan Flynn, Siân V Owen, Eleanor A Rand, Bogdan Budnik, Eric Keen, Kamesh Narasimhan, Jorge A Marchand, Maximilien S Baas-Thomas, Min Liu, Kangming Chen, Anush Chiappino-Pepe, Fangxiang Hu, Michael H Baym, George M Church
A swapped genetic code prevents viral infections and gene transfer. Nature (2023)
Natalia Quinones-Olvera, Siân V Owen, Lucy M McCully, Maximillian G Marin, Eleanor A Rand, Alice C Fan, Oluremi J Martins Dosumu, Kay Paul, Cleotilde E Sanchez Castaño, Rachel Petherbridge, Jillian S Paull, Michael H Baym
Diverse and abundant viruses exploit conjugative plasmids. bioRxiv : the preprint server for biology (2023)
Akos Nyerges, Svenja Vinke, Regan Flynn, Siân V Owen, Eleanor A Rand, Bogdan Budnik, Eric Keen, Kamesh Narasimhan, Jorge A Marchand, Maximilien S Baas-Thomas, Min Liu, Kangming Chen, Anush Chiappino-Pepe, Fangxiang Hu, Michael H Baym, George M Church
A swapped genetic code prevents viral infections and gene transfer. Nature 615 (7953) (2023)
Cristina M Herren, Michael H Baym
Decreased thermal niche breadth as a trade-off of antibiotic resistance. The ISME journal 16 (7) (2022)
Justin E Silpe, Joel W H Wong, Siân V Owen, Michael H Baym, Emily P Balskus
The bacterial toxin colibactin triggers prophage induction. Nature 603 (7900) (2022)
Annette R Rowe, Farshid Salimijazi, Leah Trutschel, Joshua Sackett, Oluwakemi Adesina, Isao Anzai, Liat H Kugelmass, Michael H Baym, Buz Barstow
Identification of a pathway for electron uptake in Shewanella oneidensis. Communications biology 4 (1) (2021)
Jasmijn A Baaijens, Alessandro Zulli, Isabel M Ott, Mary E Petrone, Tara D Alpert, Joseph R Fauver, Chaney C Kalinich, Chantal B F Vogels, Mallery I Breban, Claire Duvallet, Kyle McElroy, Newsha Ghaeli, Maxim Imakaev, Malaika Mckenzie-Bennett, Keith Robison, Alex Plocik, Rebecca Schilling, Martha Pierson, Rebecca Littlefield, Michelle Spencer, Birgitte B Simen, null null, William P Hanage, Nathan D Grubaugh, Jordan Peccia, Michael H Baym
Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification. medRxiv : the preprint server for health sciences (2021)
Karel Bå Inda, Alanna Callendrello, Kevin C Ma, Derek R MacFadden, Themoula Charalampous, Robyn S Lee, Lauren Cowley, Crista B Wadsworth, Yonatan Hagai Grad, Gregory Kucherov, Justin O'Grady, Michael H Baym, William P Hanage
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing. Nature microbiology 5 (3) (2020)
Jangwon Kim, Jin H Bae, Michael H Baym, David Yu Zhang
Metastable hybridization-based DNA information storage to allow rapid and permanent erasure. Nature communications 11 (1) (2020)
Jason Qian, Zhi-xiang Lu, Christopher P Mancuso, Han-Ying Jhuang, Rocío C Barajas-Ornelas, Sarah A Boswell, Fernando H Ramírez-Guadiana, Victoria Jones, Akhila Sonti, Kole Sedlack, Lior Artzi, Giyoung Jung, Mohammad Arammash, Mary E Pettit, Michael Melfi, Lorena Lyon, Siân V Owen, Michael H Baym, Ahmad S Khalil, Pamela A Silver, David Z Rudner, Michael Springer
Barcoded microbial system for high-resolution object provenance. Science (New York, N.Y.) 368 (6495) (2020)
Dor Russ, Fabian Glaser, Einat Shaer Tamar, Idan Yelin, Michael H Baym, Eric D Kelsic, Claudia Zampaloni, Andreas Haldimann, Roy Kishony
Escape mutations circumvent a tradeoff between resistance to a beta-lactam and resistance to a beta-lactamase inhibitor. Nature communications 11 (1) (2020)
Rocío Canals, Roy R Chaudhuri, Rebecca E Steiner, Siân V Owen, Natalia Quinones-Olvera, Melita A Gordon, Michael H Baym, Michael Ibba, Jay C D Hinton
The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid. PLoS pathogens 15 (9) (2019)
Cameron Myhrvold, Michael H Baym, Nikita Hanikel, Luvena L Ong, Jonathan S Gootenberg, Peng Yin
Barcode extension for analysis and reconstruction of structures. Nature communications 8 (2017)
David T Riglar, Tobias W Giessen, Michael H Baym, S Jordan Kerns, Matthew J Niederhuber, Roderick T Bronson, Jonathan W Kotula, Georg K Gerber, Jeffrey C Way, Pamela A Silver
Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation. Nature biotechnology 35 (7) (2017)
Isao A Anzai, Lev Shaket, Oluwakemi Adesina, Michael H Baym, Buz Barstow
Rapid curation of gene disruption collections using Knockout Sudoku. Nature protocols 12 (10) (2017)
Michael H Baym, Lev Shaket, Isao A Anzai, Oluwakemi Adesina, Buz Barstow
Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku. Nature communications 7 (2016)