William P Hanage

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 30

Top Topics

Respiratory Syndrome Coronavirus

Candida Albicans

Loop Mediated Isothermal Amplification

Top Venues

medRxiv : the preprint server for health sciences

Nature communications

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. Nature communications 14 (1) (2023)
Xueting Qiu, Lesley McGee, Laura L Hammitt, Lindsay R Grant, Katherine L O'Brien, William P Hanage, Marc Lipsitch
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting. medRxiv : the preprint server for health sciences (2023)
Xueting Qiu, Lesley McGee, Laura L Hammitt, Lindsay R Grant, Katherine L O'Brien, William P Hanage, Marc Lipsitch
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting. medRxiv : the preprint server for health sciences (2023)
Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. Nature communications 14 (1) (2023)
Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. Nature communications 14 (1) (2023)
Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. Nature communications 14 (1) (2023)
Madikay Senghore, Hannah Read, Priyali Oza, Sarah Johnson, Hemanoel Passarelli-Araujo, Bradford P Taylor, Stephen Ashley, Alex Grey, Alanna Callendrello, Robyn Lee, Matthew R Goddard, Thomas Lumley, William P Hanage, Siouxsie Wiles
Inferring bacterial transmission dynamics using deep sequencing genomic surveillance data. Nature communications 14 (1) (2023)
Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. medRxiv : the preprint server for health sciences (2023)
Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. Nature communications 14 (1) (2023)
Xueting Qiu, Lesley McGee, Laura L Hammitt, Lindsay R Grant, Katherine L O'Brien, William P Hanage, Marc Lipsitch
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting. medRxiv : the preprint server for health sciences (2023)
Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. Nature communications 14 (1) (2023)
Xueting Qiu, Lesley McGee, Laura L Hammitt, Lindsay R Grant, Katherine L O'Brien, William P Hanage, Marc Lipsitch
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting. medRxiv : the preprint server for health sciences (2023)
Xueting Qiu, Lesley McGee, Laura L Hammitt, Lindsay R Grant, Katherine L O'Brien, William P Hanage, Marc Lipsitch
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting. medRxiv : the preprint server for health sciences (2023)
Andrew Bo Liu, Daniel Lee, Amogh Prabhav Jalihal, William P Hanage, Michael Springer
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics. Nature communications 14 (1) (2023)
Xueting Qiu, Lesley McGee, Laura L Hammitt, Lindsay R Grant, Katherine L O'Brien, William P Hanage, Marc Lipsitch
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting. medRxiv : the preprint server for health sciences (2023)
Nathan B Wikle, Thu Nguyen-Anh Tran, Bethany Gentilesco, Scott M Leighow, Emmy Albert, Emily R Strong, Karel Bå Inda, Haider Inam, Fuhan Yang, Sajid Hossain, Philip Chan, William P Hanage, Maria Messick, Justin R Pritchard, Ephraim M Hanks, Maciej F Boni
SARS-CoV-2 epidemic after social and economic reopening in three U.S. states reveals shifts in age structure and clinical characteristics. Science advances 8 (4) (2022)
Mary E Petrone, Jessica E Rothman, Mallery I Breban, Isabel M Ott, Alexis Russell, Erica Lasek-Nesselquist, Hamada S Badr, Kevin Kelly, Greg Omerza, Nicholas Renzette, Anne E Watkins, Chaney C Kalinich, Tara Alpert, Anderson F Brito, Rebecca Earnest, Irina R Tikhonova, Christopher Castaldi, John P Kelly, Matthew Shudt, Jonathan Plitnick, Erasmus Schneider, Steven Murphy, Caleb Neal, Eva Laszlo, Ahmad Altajar, Claire Pearson, Anthony Muyombwe, Randy Downing, Jafar Razeq, Linda Niccolai, Madeline S Wilson, Margaret L Anderson, Jianhui Wang, Chen Liu, Pei Hui, Shrikant Mane, Bradford P Taylor, William P Hanage, Marie L Landry, David R Peaper, Kaya Bilguvar, Joseph R Fauver, Chantal B F Vogels, Lauren M Gardner, Virginia E Pitzer, Kirsten St George, Mark D Adams, Nathan D Grubaugh
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota. Communications biology 5 (1) (2022)
Brian J Arnold, I-Ting Huang, William P Hanage
Horizontal gene transfer and adaptive evolution in bacteria. Nature reviews. Microbiology (2021)
Gabrielle L Harrow, John A Lees, William P Hanage, Marc Lipsitch, Jukka Corander, Caroline Colijn, Nicholas J Croucher
Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures. The ISME journal 15 (5) (2021)
Jasmijn A Baaijens, Alessandro Zulli, Isabel M Ott, Mary E Petrone, Tara D Alpert, Joseph R Fauver, Chaney C Kalinich, Chantal B F Vogels, Mallery I Breban, Claire Duvallet, Kyle McElroy, Newsha Ghaeli, Maxim Imakaev, Malaika Mckenzie-Bennett, Keith Robison, Alex Plocik, Rebecca Schilling, Martha Pierson, Rebecca Littlefield, Michelle Spencer, Birgitte B Simen, null null, William P Hanage, Nathan D Grubaugh, Jordan Peccia, Michael H Baym
Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification. medRxiv : the preprint server for health sciences (2021)
Leonardo Clemente, Leonardo Clemente, Parker Liautaud, Justin Kaashoek, Nicholas B Link, Andre T Nguyen, Fred Sun Lu, Peter J Huybers, Bernd Resch, Clemens Havas, Andreas Petutschnig, Jessica T Davis, Matteo Chinazzi, Backtosch Mustafa, William P Hanage, Alessandro Vespignani, Mauricio Santillana
An early warning approach to monitor COVID-19 activity with multiple digital traces in near real time. Science advances 7 (10) (2021)
Moritz U G Kraemer, Chia-Hung Yang, Bernardo Gutierrez, Chieh-Hsi Wu, Brennan Klein, David M Pigott, null null, Louis du Plessis, Nuno Rodrigues Faria, Ruoran Li, William P Hanage, John S Brownstein, Maylis Layan, Alessandro Vespignani, Huaiyu Tian, Christopher Dye, Oliver George Pybus, Samuel V Scarpino
The effect of human mobility and control measures on the COVID-19 epidemic in China. Science (New York, N.Y.) 368 (6490) (2020)
Karel Bå Inda, Alanna Callendrello, Kevin C Ma, Derek R MacFadden, Themoula Charalampous, Robyn S Lee, Lauren Cowley, Crista B Wadsworth, Yonatan Hagai Grad, Gregory Kucherov, Justin O'Grady, Michael H Baym, William P Hanage
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing. Nature microbiology 5 (3) (2020)
Sonja Lehtinen, Claire Chewapreecha, John A Lees, William P Hanage, Marc Lipsitch, Nicholas J Croucher, Stephen D Bentley, Paul Turner, Christophe Fraser, Rafal J Mostowy
Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae. Science advances 6 (21) (2020)
Christian Julián Villabona-Arenas, William P Hanage, Damien C Tully
Phylogenetic interpretation during outbreaks requires caution. Nature microbiology 5 (7) (2020)
Jacob E Lemieux, Katherine J Siddle, Bennett M Shaw, Christine Loreth, Stephen F Schaffner, Adrianne Gladden-Young, Gordon Adams, Timelia Fink, Christopher H Tomkins-Tinch, Lydia A Krasilnikova, Katherine C DeRuff, Melissa A Rudy, Matthew R Bauer, Kim A Lagerborg, Erica Normandin, Sinéad B Chapman, Steven K Reilly, Melis N Anahtar, Aaron E Lin, Amber Carter, Cameron A Myhrvold, Molly E Kemball, Sushma Chaluvadi, Caroline N Cusick, Katelyn Flowers, Anna E Neumann, Felecia Cerrato, Maha Reda Farhat, Damien Slater, Jason B Harris, John A Branda, David Hooper, Jessie M Gaeta, Travis P Baggett, James O'Connell, Andreas Gnirke, Tami D Lieberman, Anthony Philippakis, Meagan Burns, Catherine M Brown, Jeremy Luban, Edward T Ryan, Sarah E Turbett, Regina C LaRocque, William P Hanage, Glen R Gallagher, Lawrence C Madoff, Sandra Smole, Virginia M Pierce, Eric D Rosenberg, Pardis C Sabeti, Daniel J Park, Bronwyn L MacInnis
Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events. Science (New York, N.Y.) 371 (6529) (2020)
William P Hanage, Christian Testa, Jarvis T Chen, Letitia Davis, Elise Pechter, Peg Seminario, Mauricio Santillana, Nancy Krieger
COVID-19: US federal accountability for entry, spread, and inequities-lessons for the future. European journal of epidemiology 35 (11) (2020)
Taj Azarian, Pamela P Martinez, Brian J Arnold, Xueting Qiu, Lindsay R Grant, Jukka Corander, Christophe Fraser, Nicholas J Croucher, Laura L Hammitt, Raymond Reid, Mathuram Santosham, Robert C Weatherholtz, Stephen D Bentley, Katherine L O'Brien, Marc Lipsitch, William P Hanage
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae. PLoS biology 18 (10) (2020)
Taj Azarian, Patrick K Mitchell, Maria Georgieva, Claudette M Thompson, Amel Ghouila, Andrew J Pollard, Anne von Gottberg, Mignon du Plessis, Martin Antonio, Brenda A Kwambana-Adams, Stuart C Clarke, Dean Everett, Jennifer Cornick, Ewa Sadowy, Waleria Hryniewicz, Anna Skoczynska, Jennifer C Moïsi, Lesley McGee, Bernard Beall, Benjamin J Metcalf, Robert F Breiman, Pak Leung Ho, Raymond Reid, Katherine L O'Brien, Rebecca A Gladstone, Stephen D Bentley, William P Hanage
Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLoS pathogens 14 (11) (2018)
Taj Azarian, Lindsay R Grant, Brian J Arnold, Laura L Hammitt, Raymond Reid, Mathuram Santosham, Robert Weatherholtz, Novalene Goklish, Claudette M Thompson, Stephen D Bentley, Katherine L O'Brien, William P Hanage, Marc Lipsitch
The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome. PLoS pathogens 14 (4) (2018)